BGIOSGA020000

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Revision as of 03:01, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020000| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA020000, complete gene.| tag = OJ1280_...")
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Gene Name

BGIOSGA020000

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA020000, complete gene.

LocusTag

OJ1280_A04.8

Ensembl Transcript ID

BGIOSGA020000-TA

Ensembl Protein ID

BGIOSGA020000-PA

Length

4214

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:24204093..24208306

Sequence Coding Region

24204093..24204597,24204675..24205934,24206105..24206722,24206829..24207116,24207213..24208306

Genome Context

<gbrowseImage1> name=IndicaChromosome05:24204093..24208306 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:24204093..24208306 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGAGCTCGACCCACGTGGCTGTCGCGGCCCCGGATCCGGGGGGAGACGGGGGCCTCGGCGAGGCGAGGCTGGTGGATGCTGATGCTGCTGCTGCACCGGCGGCGGGGGATGCGGAGGGGAGCTTGGGTGGTGGTGGTGGTGGCAGCTCGGCCCCCGCCGCTGCGGGGGACGCTGATGTGACGATGACAGAGGCCGTGGAGGAGGAGGTGGAGGTGGAGGTTGCGGGTGATGCCGAGGCGGAGGCTGCGGTGGTGGCGGGGGATGCGGCGGGTGATCCGTTGTATGGGACGGAGTCGGCTGGTATGGTTGTGGATGAGCCCGTTGACGCCCCCGAGGGAGGGGTAGATGGGGGAGATGGTGGCAAGGAGGGGTTGGAAGCGGAGGCTAGGGTTTTGCAGGGTGAGGCTGCGACGGAGCCCGTTCCGGCAGGAGGAGATGTTGCCATTGCTTCTGAAGTGGCGGCGGAAGCACATGATTCTGCTACTCCTGAGCATGCTGAGGCCGAATCCAATGATCTCGAAGAAAACCATGTTGATAGAGGAAAAGATAATGGCGTGGCGGTGGCGCACTGTGACGACGAAATGCAGAATAATGTGGAGGGGAGCTCCGAGATCCAAGAAGATGATGGAGCTCCCACAATTGAGCAGCAGGATGATGAGTCTGAAACGCCCCTGCCTTCTAGTGTGTCGAATTTTGAATTATGCGCTAGATACAGCCTTCCTCCTCTTGATAAAGGAGAATTTCGAGTTTCTGACCTTGTCTGGGGTAAAGTAAAAAGCCATCCTTGGTGGCCTGGTGAGATTTTTGACCCTTCAGATGCGTCTGAGTTGGCATTGAAGCACCAGAAGAAGGGCAGCCATTTGATAGCATATTTCGGTGACAATACTTTTGCATGGTGCGATGAATCCCAATTGAAGCCTTTTGTATCAAATTATTCACAAATGGAGAAACAGAGCAGTTCAGATGCCTTTGTTAGTTCAGTTAACTATGCCCTTGAAGAACTCTCAAGGCGGATATTGTCAGGGATGAGCTGTTCTTGTTTACCGGAAGAGCTATCTGACAATGGGATGTCCTATATGGTCGAGAATGCTGGGCTCAAGGATGGAGTTACTTGCTCTGCAGTTAACCGGTCTGAGATTTTGTCATGTTGCAGCCCAGAAAATCTTCTTAATTATGTTAAGTCTTTGGCTCTGTTCCCTGGCCAAGGTGGTGACTTGCTGGAATTAGTGATAGCTTGCTCTCAACTTACATCTTTTTATCGATCTAAGGGATGCCCTGAACTTGCATCATTCCAAACAGGCAGTGCATGGGTTGAGAATGGTGTGGACCCTTCTTCCATCAAGGATGATGTGGTTGATGAAGTTGTCACTAATGAAGAGCCTCCTGCTAATGATAAGCCCAAAAGAGGCAGGGGGCGACCTCGTAAGCAGAAACCTGAGGATGGTCTAGAGCTGACAGAGAAAAAGTCAACATCCAATCTTTCTACTGATAATGCCTATGATCATCCTGCGGAAAGGCAGATGGATATGGAGTTTGATGAATTTGACGGTTTACAGAGCAAGAAGAAAAGAAGCCTTGACTCGTTTGAAGATCCTGAGACCAAGGCGGCAGCTCCATCTTTTGGTAGTTCTTTCAAGATCGGGGAATGTATTCGGCGAGCTGCAAGCCAGCTGACAGGATCTTCATCTATTGTCAAGTCCCAGAATGAACAGGTGCCTCATAAGAACATCGCTGAAACAGAAAATGGAGATTTTGATGTCTCTACAAATATCGTTGAGAAAACTACTGCAAAAAAGGGGAGAAAGCGGAAGGTTATGCCTTCTCCTGAGGTGGAGACAACTGATCACATGCAGGATTCCTACTGGTCTGGCTTGAGTTTGCATAATCACCCAATTCATGATCTCAGAAGAGTGAGTACTAGCACAAGGCCAAGGCGCAGAAGGAGATCATTGCGGGAAACATATTTCCATGCACAACAAAATCTACAGCATGGACTATTGAGTCCTAAGAAACAGATACAAGTGATAGAGAGATCAATTATCCATGTTGATGAAAAGATGGTTGATGAGGTCAAGCCCACTGCACTTGTTTTGAGCTTTGGTAGGTCAAGTGCTCTTCCTTCTGAAACTGATCTGGTTAAGATGTTTGGTCGCTATGGTCCACTGAAAGAATCTGAGATTGAAGTTCATGCCAGCTCGAATACTGTTAAAGTAGTCTTCAAGAAACGTGCTGATGCTGAAAGGGCTTTCAGTTTTGCTGGCAAGTTTAGTACATTTGGTCCTTCGCTCCGCAGTTACCGTCTTGTGAATATGCCATTTTTTCTCAGCTCACAAACCAATAATACAGAGGCACACTCTGAGTACCATGGTCTGGAGATTCCAGGTCCAAGTGAGTCCAAAGTTCCACTAGATGCTGCAGAAGCTGACCAAGTTGACAAAACAGATGAGAAAGTAGAAGATAAAGGTACTGCTGAAGTACTGGCTAGGGAGACAGGTGATAGTATAACTGCACCTGGAGCACTAGATGAGAAAACAGAAAAGGAAGCTACTGCTGAAGCACTAGCTGACAAGACGACAGAAGGTGAAATTACAGCTGAAGTACAGGTTGAGGAGACTACTACAACTGAGAAAATTGTAGAGGATAAAGAACTAGCTGAGGAGACGACAGAAGCCATTGAGAAAATTGTAGAGGATAATACCATAGCTGAGGAGATTACAGAAGGTGAAACTGTAGCTGAAGTACATGTTGAGGTAGCTACAGCAATTGATAAAGCTGTAGAGGAAAACACACTAGCTGAGGAGACAGCTAAAGGTGAAACTACACCTGAAGTACACGTGGAGGAAACTACAACAGCAGTGGAATCTGTGGGGGACAAAGCAGTAGATGAGACAACAAAAGGTGAAACTACAGCTGAAGTATATGCTAAAGAATCAACCGAGAAAACTGTAGAGGATACCACAGTTGAGGCACCAGATGAGAAAACTAAAACAGCCAATGATCCTGTAGAGGATGCCACCGTTGAAGAGCCAGATAAGAAAACTGCAGCCAATGATCCTGTAGAGGATGCCACCGTTGAAGAGCCAGATAAGAAAACCGCAGCCAATGATCCTGCAGAGGATGCCACAGTCGAAGAGCCAGATAAGAAAACCGCAGCCAATGATCATGTAGAGGATGCCACCCCTGAAGAGCCAGATAAGAACACCACAACCAATGATCATGTAGAGGATGTGACTGTTGAAGAGCCAGATAAGAAAACCGCAGCCAATGATCCTGTAGAGGAAGTCATCCCTGAAGAGACAGATAAGAACACCACAACCAATGATCCAGTAGAGGATGTGACTATTGAAGAGCCAGATATGAAAACCGAAGCCAATGATCCTATAGAGGAAGCCACCGTTGAAGAGCCAGCTGTGGAAGCTGGGACAATTGAAGAGATTGCTACGGCTGAAGCACGAGATGAGAAAACCATGATAACCGAGGAAACTGCACAGGATCCCATGGTTGAAGATGAGAAAACCATGACAACCGAGGAAACCACACAGGAGCCCATGGTTGAAGATGAGAAAACCGTGACAACGGAGGAAACTGTACAGGATCCCATGGTTGTAGATGACAAAACCATGACAACCGAGAAAACTGTACAGGATTCCATGGTTGAAGAAGGTGGTACGAATATCGCAGCTGCTGAGGAAACTGTAGAGCATGCTGCTGCTACTGCTGAGGCTTTGGCTGGACAAGCAAGTTCAACCGAGCAGACCGGGTAG</cdnaseq>

Protein Sequence

<aaseq>MSSTHVAVAAPDPGGDGGLGEARLVDADAAAAPAAGDAEGSLGGGGGGSSAPAAAGDADVTMTEAVEEEVEVEVAGDAEAEAAVVAGDAAGDPLYGTESAGMVVDEPVDAPEGGVDGGDGGKEGLEAEARVLQGEAATEPVPAGGDVAIASEVAAEAHDSATPEHAEAESNDLEENHVDRGKDNGVAVAHCDDEMQNNVEGSSEIQEDDGAPTIEQQDDESETPLPSSVSNFELCARYSLPPLDKGEFRVSDLVWGKVKSHPWWPGEIFDPSDASELALKHQKKGSHLIAYFGDNTFAWCDESQLKPFVSNYSQMEKQSSSDAFVSSVNYALEELSRRILSGMSCSCLPEELSDNGMSYMVENAGLKDGVTCSAVNRSEILSCCSPENLLNYVKSLALFPGQGGDLLELVIACSQLTSFYRSKGCPELASFQTGSAWVENGVDPSSIKDDVVDEVVTNEEPPANDKPKRGRGRPRKQKPEDGLELTEKKSTSNLSTDNAYDHPAERQMDMEFDEFDGLQSKKKRSLDSFEDPETKAAAPSFGSSFKIGECIRRAASQLTGSSSIVKSQNEQVPHKNIAETENGDFDVSTNIVEKTTAKKGRKRKVMPSPEVETTDHMQDSYWSGLSLHNHPIHDLRRVSTSTRPRRRRRSLRETYFHAQQNLQHGLLSPKKQIQVIERSIIHVDEKMVDEVKPTALVLSFGRSSALPSETDLVKMFGRYGPLKESEIEVHASSNTVKVVFKKRADAERAFSFAGKFSTFGPSLRSYRLVNMPFFLSSQTNNTEAHSEYHGLEIPGPSESKVPLDAAEADQVDKTDEKVEDKGTAEVLARETGDSITAPGALDEKTEKEATAEALADKTTEGEITAEVQVEETTTTEKIVEDKELAEETTEAIEKIVEDNTIAEEITEGETVAEVHVEVATAIDKAVEENTLAEETAKGETTPEVHVEETTTAVESVGDKAVDETTKGETTAEVYAKESTEKTVEDTTVEAPDEKTKTANDPVEDATVEEPDKKTAANDPVEDATVEEPDKKTAANDPAEDATVEEPDKKTAANDHVEDATPEEPDKNTTTNDHVEDVTVEEPDKKTAANDPVEEVIPEETDKNTTTNDPVEDVTIEEPDMKTEANDPIEEATVEEPAVEAGTIEEIATAEARDEKTMITEETAQDPMVEDEKTMTTEETTQEPMVEDEKTVTTEETVQDPMVVDDKTMTTEKTVQDSMVEEGGTNIAAAEETVEHAAATAEALAGQASSTEQTG</aaseq>

Gene Sequence

<dnaseqindica>1..505#583..1842#2013..2630#2737..3024#3121..4214#ATGAGCTCGACCCACGTGGCTGTCGCGGCCCCGGATCCGGGGGGAGACGGGGGCCTCGGCGAGGCGAGGCTGGTGGATGCTGATGCTGCTGCTGCACCGGCGGCGGGGGATGCGGAGGGGAGCTTGGGTGGTGGTGGTGGTGGCAGCTCGGCCCCCGCCGCTGCGGGGGACGCTGATGTGACGATGACAGAGGCCGTGGAGGAGGAGGTGGAGGTGGAGGTTGCGGGTGATGCCGAGGCGGAGGCTGCGGTGGTGGCGGGGGATGCGGCGGGTGATCCGTTGTATGGGACGGAGTCGGCTGGTATGGTTGTGGATGAGCCCGTTGACGCCCCCGAGGGAGGGGTAGATGGGGGAGATGGTGGCAAGGAGGGGTTGGAAGCGGAGGCTAGGGTTTTGCAGGGTGAGGCTGCGACGGAGCCCGTTCCGGCAGGAGGAGATGTTGCCATTGCTTCTGAAGTGGCGGCGGAAGCACATGATTCTGCTACTCCTGAGCATGCTGAGGCCGGTAAGCGGACCGATGACAGTTTGATGTACTGTCTCTTACTCCTTTCGCGTCGCTGAATAATGGTTACTACATTTCAGAATCCAATGATCTCGAAGAAAACCATGTTGATAGAGGAAAAGATAATGGCGTGGCGGTGGCGCACTGTGACGACGAAATGCAGAATAATGTGGAGGGGAGCTCCGAGATCCAAGAAGATGATGGAGCTCCCACAATTGAGCAGCAGGATGATGAGTCTGAAACGCCCCTGCCTTCTAGTGTGTCGAATTTTGAATTATGCGCTAGATACAGCCTTCCTCCTCTTGATAAAGGAGAATTTCGAGTTTCTGACCTTGTCTGGGGTAAAGTAAAAAGCCATCCTTGGTGGCCTGGTGAGATTTTTGACCCTTCAGATGCGTCTGAGTTGGCATTGAAGCACCAGAAGAAGGGCAGCCATTTGATAGCATATTTCGGTGACAATACTTTTGCATGGTGCGATGAATCCCAATTGAAGCCTTTTGTATCAAATTATTCACAAATGGAGAAACAGAGCAGTTCAGATGCCTTTGTTAGTTCAGTTAACTATGCCCTTGAAGAACTCTCAAGGCGGATATTGTCAGGGATGAGCTGTTCTTGTTTACCGGAAGAGCTATCTGACAATGGGATGTCCTATATGGTCGAGAATGCTGGGCTCAAGGATGGAGTTACTTGCTCTGCAGTTAACCGGTCTGAGATTTTGTCATGTTGCAGCCCAGAAAATCTTCTTAATTATGTTAAGTCTTTGGCTCTGTTCCCTGGCCAAGGTGGTGACTTGCTGGAATTAGTGATAGCTTGCTCTCAACTTACATCTTTTTATCGATCTAAGGGATGCCCTGAACTTGCATCATTCCAAACAGGCAGTGCATGGGTTGAGAATGGTGTGGACCCTTCTTCCATCAAGGATGATGTGGTTGATGAAGTTGTCACTAATGAAGAGCCTCCTGCTAATGATAAGCCCAAAAGAGGCAGGGGGCGACCTCGTAAGCAGAAACCTGAGGATGGTCTAGAGCTGACAGAGAAAAAGTCAACATCCAATCTTTCTACTGATAATGCCTATGATCATCCTGCGGAAAGGCAGATGGATATGGAGTTTGATGAATTTGACGGTTTACAGAGCAAGAAGAAAAGAAGCCTTGACTCGTTTGAAGATCCTGAGACCAAGGCGGCAGCTCCATCTTTTGGTAGTTCTTTCAAGATCGGGGAATGTATTCGGCGAGCTGCAAGCCAGCTGACAGGATCTTCATCTATTGTCAAGTCCCAGAATGAACAGGTGCCTCATAAGAACATCGCTGAAACAGAAAATGGAGATTTTGATGTCTCTAGTGATGATGCTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATGCTCAGTGCCTGTGGAGCCAACGCACGGATATAGTTTCTCTGCAATGGTAATTAATTACTTCAGTGATTATAGGAACTATGTTGTTTCTACTACTACTGAAGCAAATATCGTTGAGAAAACTACTGCAAAAAAGGGGAGAAAGCGGAAGGTTATGCCTTCTCCTGAGGTGGAGACAACTGATCACATGCAGGATTCCTACTGGTCTGGCTTGAGTTTGCATAATCACCCAATTCATGATCTCAGAAGAGTGAGTACTAGCACAAGGCCAAGGCGCAGAAGGAGATCATTGCGGGAAACATATTTCCATGCACAACAAAATCTACAGCATGGACTATTGAGTCCTAAGAAACAGATACAAGTGATAGAGAGATCAATTATCCATGTTGATGAAAAGATGGTTGATGAGGTCAAGCCCACTGCACTTGTTTTGAGCTTTGGTAGGTCAAGTGCTCTTCCTTCTGAAACTGATCTGGTTAAGATGTTTGGTCGCTATGGTCCACTGAAAGAATCTGAGATTGAAGTTCATGCCAGCTCGAATACTGTTAAAGTAGTCTTCAAGAAACGTGCTGATGCTGAAAGGGCTTTCAGTTTTGCTGGCAAGTTTAGTACATTTGGTCCTTCGCTCCGCAGTTACCGTCTTGTGAATATGCCATTTTTTCTCAGCTCACAAACCAATAATACAGAGGCACACTCTGAGTACCATGGTCTGGAGATTCCAGGTAAACAATCCTTCTATTACTTTTTGTAAGCTAGTGTAAAAGTTGGTTAACATTTTAGAAAATATTTGCATGTTTAATATATCACATGGCATTTTCTTTTTTGCAGGTCCAAGTGAGTCCAAAGTTCCACTAGATGCTGCAGAAGCTGACCAAGTTGACAAAACAGATGAGAAAGTAGAAGATAAAGGTACTGCTGAAGTACTGGCTAGGGAGACAGGTGATAGTATAACTGCACCTGGAGCACTAGATGAGAAAACAGAAAAGGAAGCTACTGCTGAAGCACTAGCTGACAAGACGACAGAAGGTGAAATTACAGCTGAAGTACAGGTTGAGGAGACTACTACAACTGAGAAAATTGTAGAGGATAAAGAACTAGCTGAGGAGACGACAGAAGGTGAAATTACAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGCTACTGCTGAAGTACTCGAGGAATGTACAGCCATTGAGAAAATTGTAGAGGATAATACCATAGCTGAGGAGATTACAGAAGGTGAAACTGTAGCTGAAGTACATGTTGAGGTAGCTACAGCAATTGATAAAGCTGTAGAGGAAAACACACTAGCTGAGGAGACAGCTAAAGGTGAAACTACACCTGAAGTACACGTGGAGGAAACTACAACAGCAGTGGAATCTGTGGGGGACAAAGCAGTAGATGAGACAACAAAAGGTGAAACTACAGCTGAAGTATATGCTAAAGAATCAACCGAGAAAACTGTAGAGGATACCACAGTTGAGGCACCAGATGAGAAAACTAAAACAGCCAATGATCCTGTAGAGGATGCCACCGTTGAAGAGCCAGATAAGAAAACTGCAGCCAATGATCCTGTAGAGGATGCCACCGTTGAAGAGCCAGATAAGAAAACCGCAGCCAATGATCCTGCAGAGGATGCCACAGTCGAAGAGCCAGATAAGAAAACCGCAGCCAATGATCATGTAGAGGATGCCACCCCTGAAGAGCCAGATAAGAACACCACAACCAATGATCATGTAGAGGATGTGACTGTTGAAGAGCCAGATAAGAAAACCGCAGCCAATGATCCTGTAGAGGAAGTCATCCCTGAAGAGACAGATAAGAACACCACAACCAATGATCCAGTAGAGGATGTGACTATTGAAGAGCCAGATATGAAAACCGAAGCCAATGATCCTATAGAGGAAGCCACCGTTGAAGAGCCAGCTGTGGAAGCTGGGACAATTGAAGAGATTGCTACGGCTGAAGCACGAGATGAGAAAACCATGATAACCGAGGAAACTGCACAGGATCCCATGGTTGAAGATGAGAAAACCATGACAACCGAGGAAACCACACAGGAGCCCATGGTTGAAGATGAGAAAACCGTGACAACGGAGGAAACTGTACAGGATCCCATGGTTGTAGATGACAAAACCATGACAACCGAGAAAACTGTACAGGATTCCATGGTTGAAGAAGGTGGTACGAATATCGCAGCTGCTGAGGAAACTGTAGAGCATGCTGCTGCTACTGCTGAGGCTTTGGCTGGACAAGCAAGTTCAACCGAGCAGACCGGGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020000