BGIOSGA020076

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Revision as of 03:03, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020076| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA020076, complete gene.| tag = OJ1004_...")
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Gene Name

BGIOSGA020076

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA020076, complete gene.

LocusTag

OJ1004_E02.8

Ensembl Transcript ID

BGIOSGA020076-TA

Ensembl Protein ID

BGIOSGA020076-PA

Length

5548

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:25373557..25379104

Sequence Coding Region

25373557..25373592,25375433..25375538,25375672..25375793,25375876..25376221,25376748..25376957
,25377035..25377133,25377272..25377339,25377430..25377504,25377710..25378255
,25378364..25378416,25378487..25378528,25378638..25378782,25378865..25378975
,25379093..25379104

Genome Context

<gbrowseImage1> name=IndicaChromosome05:25373557..25379104 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:25373557..25379104 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGCGGCCGCAAATCTCCATCAAAGTCGACACAGTCAAGCAGTAGTGGTGCCAGATCAAACCTTCCAGTCTCAACAGGAAAGGCGTTGACACCGACCTTTTCTGGTCAATCTGGATCAGTTTCAGGTTTTCGTCATCCTGGTTCACTAGCACCAAGGGGTTCCTCAATGACTGGTAGTTCATCCCTTGGGGTTCAACCGCCTAGGGGTAGTATTTCTGGTGCTTGGTTTCCTCCAAATAGTCTTCAAGCATCCATTTATCAGGTCGGGTATCCTGCTCTCAGCAACCGAGGAGGTATGCATGTTGGGGGAAGTCCTGTTTTTACTGGTAACATGAGTGCAATTGATGGTTCAATACAAGCTTCCTCCTCGTACTTGACTAAAGATGGTAACCACAATTCTGCTCTTGGATTGGCAGCTGCTCCAGTTTGTGGGAATTTTGGCCCGCGAATAACTTATGTGGCTAGCGTTGCGGGTGGGGGCAACATTGGGAGAACCATAAGCTCTGCCGGAATGTCTATGCCTACTGTTGCATCCCCTGTGAATTTGTCTGGAAGTGGGGCTCTTAATATCCGAGGATCAAACCAAATGGGTGGTACTCATCAACAAGGATTGCCGGCTATGAATATGCTTGGAAGCTCTAGTTCAGCACCTGGAGGAACACTATCTAAGAACCAATTGCAGGCAGGAAGCAGTTCGTCTGGTTCTCCAGGAATGCGACATGATGGTAACTTTGGTGAAAATTCTCTATTTGACATCAATGATTTTCCTCAATTAGTTGGGCGACCTAATTCTGCTGGAAATATTCAGGGGTTATATGGACCTCTAAGACAACAAGCATTTGGTATTAATGCTGTTCAGCAAAACCAGGAATTTAGAATCCATAATGAGGACTTCCCAGCTTTACCAAGATTGGAAGGTATGGAGTTGCATCGCAAGGATCATCTTCCTAAGAATGCAAATATTATGCAAGCACAACATTATCCTATGGGCAAATCATCTGGCTTTAACACAGGCAGCAGTTGTCCACCCCGTAAACAACATAAGCAGACAGCTAATTCGGTTCAAAATACTGGGCCTGAAAATGTTGGACCAAGGCCAGTAAATTCTCCAAGGTCGCCTTTAAATCCGAGGCCTCGTGAACAAGTTATCCAGCAAAATCATGAACCACAGGCTCAGAAGTCAGTTAGGCTGCAGTCATCTTCCGGCCCAGAGTCTCACAAGGTTCAGAGTCCCAAGTCTTCTCAGAGAACTGATACCACACTAGAGTCTCACAAGGTTCAGAGTCCCAAGCCTTCTCAGAGAACCGATACCGCACCAGAGTCTCACAAGGTTCAGAGTCCCAAGTCTTCTCAGAGAACTGATACCGCACCGGATCCATATGATCCATATGGCTTACATGGACTACTGAGGGTAATGAAGTTGAAAGAGGAGGGACCGGCATCTCTTGCTTTAGGGATTGATTTGACAACACTAGGGTTGGATATGAACTCTTCAGATAATCTTTACAAGACATTTGGCTCTCCTTGGTCAAGTGAGCCAGTTAAAGAAGAGTATTCTTATGAAATTCCGGATTGCTACTCTTCTATGCAGCCTCCACCCCTGCAAGCGTTGCATTTTCTGAGGTTTCACCTCATGACACTATTCTACATCTTCTACAGTATGCCACAGGATGCAGCTCAGTTATATGCCGCGAATGAAATATGCAAATACGGGTGGGTTTACCACAAAGAGCTGCGTCAGTGGGTTAAAAGAGCTCCTAATACGACCCCTCTCGTCAAAACTACAACTTATGAACAAGGACTCTGCTATCTTTTTGATGCCAACATTTGGGATGCAATTCCTAAGGACAACTTTATTCTCCGTTATGATGATATCGAGAAGATACCTGCCCTTCCTCCCCTTCTTCCTGCCACCCAAAATCCTGCCACCCAAAATGGTAGTGTAAGAATAAACAAGCCATTGCAGTAG</cdnaseq>

Protein Sequence

<aaseq>MGGRKSPSKSTQSSSSGARSNLPVSTGKALTPTFSGQSGSVSGFRHPGSLAPRGSSMTGSSSLGVQPPRGSISGAWFPPNSLQASIYQVGYPALSNRGGMHVGGSPVFTGNMSAIDGSIQASSSYLTKDGNHNSALGLAAAPVCGNFGPRITYVASVAGGGNIGRTISSAGMSMPTVASPVNLSGSGALNIRGSNQMGGTHQQGLPAMNMLGSSSSAPGGTLSKNQLQAGSSSSGSPGMRHDGNFGENSLFDINDFPQLVGRPNSAGNIQGLYGPLRQQAFGINAVQQNQEFRIHNEDFPALPRLEGMELHRKDHLPKNANIMQAQHYPMGKSSGFNTGSSCPPRKQHKQTANSVQNTGPENVGPRPVNSPRSPLNPRPREQVIQQNHEPQAQKSVRLQSSSGPESHKVQSPKSSQRTDTTLESHKVQSPKPSQRTDTAPESHKVQSPKSSQRTDTAPDPYDPYGLHGLLRVMKLKEEGPASLALGIDLTTLGLDMNSSDNLYKTFGSPWSSEPVKEEYSYEIPDCYSSMQPPPLQALHFLRFHLMTLFYIFYSMPQDAAQLYAANEICKYGWVYHKELRQWVKRAPNTTPLVKTTTYEQGLCYLFDANIWDAIPKDNFILRYDDIEKIPALPPLLPATQNPATQNGSVRINKPLQ</aaseq>

Gene Sequence

<dnaseqindica>1..36#1877..1982#2116..2237#2320..2665#3192..3401#3479..3577#3716..3783#3874..3948#4154..4699#4808..4860#4931..4972#5082..5226#5309..5419#5537..5548#ATGGGCGGCCGCAAATCTCCATCAAAGTCGACACAGGTAATCCTCCCTTTCCGCCACCTCCTCAACGACTGATTTTGGTAATTGTTGTTGTGATTTGGTTGGTACGCATGAGGTTTGGTAGGTAGAGATAGTCGGCAAGTATGTACTATACTAGGTAAGACCTCAATTTTCCATTTATTCGGGAGTGGTCTACGTTGACAAGTATTTAGGATTCCCCGTGGAAAAACAATTGAATACTAATCTAGCGGTAAAACGCATAGATCTAGGGTTAGGGTTAGGGATGGCAATTGGGTGTGACGGGCACGGGTATTGGCTACCCATGCCCACGCCCGCGAGTTTGTTGTCCACAGGCGTGCCCGTTACTCTATGAGGGGTGAAGAACTCAGCCCATAACTGTAGCTTGTGGACGCTGTGTGCTCGCGGGCATGCCTATGTGCCCGCCAGATAGCTTAACGATATGGTTTCAAAAGTTCAGCGGATCGGAAAGAGAACATCGAAATAGAACAAAAAAAAATCCCACATGTTAGCATGAGGATGCTAATCGCTTGATGTACAAGCTGAACAATTACTGGCAAGCACATGCAACTAGAGGCCTAGTTACTGGTAAACATGAACGAAAACCAATACTCCATTTTAGATTTCTAGATCTGACAACATGATGGTCCTAATCTGAAAAGGCAAAAGGGGAATCGAGAGAATATGAGAGAGACAATCATCATCGGGAGGATTAAAGGATGCGCGGATGGAGTCCTGGTGGTTGGTCACACCTTGCTTGGTTGTCTGGTTGCCTCCATAGTCAGCGCATGCTGCACCGTCCGCTGATGCCATGGATAGCTGCTACCTGCCGACGCCTGGGAGGAAGGAACCAAGGGCAGAGCTAGCAGGCAGTGCGTTGAGGGACCGGCTGGGTGTCGTGCGCTAGGGTGGCTTGAGCAGGCGGCAAACAATGGAAGCTTGGAATAGTTGAGCATGGAGACACTGTCCGTGGCAGCAGCGGTTGTGGGTAATTTGGTTGAGGGGATTTGGAAGAACCCTAGAGAGATTTATATATATACCTTGGAGGAAATATTACAGGCCAAGCTTACATGGCAGTTGGATGAGATAGGTAAACAGGTGAAGCAAAACAAGCCTCTGCGGCATGAGATCCCAAGTAGAGTGGTTACATCTTCTTATGATTATGTTTTAAACAGGTTTTGGATCCTGCATTGCATCCATTGCACATCATCTGTTCAATAATACATCAATCCTTTCCCTTTTGTTCCTTGAAAAATAGCCTGCATTTTGGAGGATTGCCTGTACAGGGTATTGTCTTATCTTGAACTCTAGATCTGATAAATGGTGTTATGGAATTGGTAGAATATTGTTGACTTGCTCTTGGCCTGTTTGTTCTTTGATCATCATCAAAATGTCAGGATTGCTGAATGTGTGCTCTCATCCTTGTTTAGTTGTTTTCAGAAGGCCCTCATCCTTACTATCATAATTTTTTTACGTGTTTATATCTTATTTCAATAAATCATTGCAGTCCAGATTAACAGACTCACGAGCCTGTTTATACTTTATTGGTGGTTTGTGTATCCTTCTGGATACTGTATTCTTGTAACTTACCTTCTCTTTGTTTAGTTCCTCTATTTCACAAGGACCTTAAACTGTGTCTGAAATCAAAACAAAGTGTTATGAATCATGCTGTTGAAGGACACTTTTTTCTTGTTGTTATTAGTGCTCTTTAGAGTAGTGAAAAGCAGCTTTGAATACTAGCTATGATTTATTATTTAAGTCTATATTATAATTAAAATTTGACCCTATTATTTTGTTTTGGCACAAATGCATATTAAAATGTCACAATTATAGGTTAACTTATGTCTTGTTACTTTTTCAGTCAAGCAGTAGTGGTGCCAGATCAAACCTTCCAGTCTCAACAGGAAAGGCGTTGACACCGACCTTTTCTGGTCAATCTGGATCAGTTTCAGGTTTTCGTCATCCTGGTTAGTGACATTACAGTTGTTTATTTTGCTAGTCCGTTTGTGCATGTTAGAAAGTGATGTTTTTCTAAAACTAACTCTCACGAAAAACTTGGAAGGGTTGTATATGGGAATCTCAATCTTAGAAACATGTCAGGTTCACTAGCACCAAGGGGTTCCTCAATGACTGGTAGTTCATCCCTTGGGGTTCAACCGCCTAGGGGTAGTATTTCTGGTGCTTGGTTTCCTCCAAATAGTCTTCAAGCATCCATTTATCAGGTTCTTTTTTCCTCTCCTAAGCTCGAGTCTGTTTATGAAGCTCTTCTAATCCAGCTCACATTTTCTTTCATCCTTTTTGTAGGTCGGGTATCCTGCTCTCAGCAACCGAGGAGGTATGCATGTTGGGGGAAGTCCTGTTTTTACTGGTAACATGAGTGCAATTGATGGTTCAATACAAGCTTCCTCCTCGTACTTGACTAAAGATGGTAACCACAATTCTGCTCTTGGATTGGCAGCTGCTCCAGTTTGTGGGAATTTTGGCCCGCGAATAACTTATGTGGCTAGCGTTGCGGGTGGGGGCAACATTGGGAGAACCATAAGCTCTGCCGGAATGTCTATGCCTACTGTTGCATCCCCTGTGAATTTGTCTGGAAGTGGGGCTCTTAATATCCGAGGATCAAACCAAATGGGTGGTACTCATCAACAAGGTATATACTAAACATATAAACCCCTTGTATAAATGCACGTGCATATGTTCTCAATTTGTCTTTCTTTCTGATTTGATAATGAAGTGATCTAAAATAAATAATATTAAAAATCACATACTCCCTATTTTTTTATATGACATTGGTTGGTTCAATTTTGAACTAGCCAACGCCATATAAAAAAAGGACTGAGTATTAAGCCTATGAAGTACACTAGTCATATGGAGCAAAAAAGAATAAGGAAGCACATATTTGACCGGTACCTGATCTGGGGAATGGAAGTGTTAATTGGGTCCATTATTAAAGAAGTACACCATTCTGTTGAGGCAATTTGCCATAGTTCTGCTAGCTGTTATTTATTCTGTACTGACATCTCATCCATCTTGTTAATGTGCTTATTCTATTACATTTATCAATCAAACGAAGCAACTAAAACGTGTGCAGAACTTACTGTGTTTAGTAAGAATGTGAACGTTCTCATTTCTTATATATAAAAGGGCAGTTTTGTTTCAAATTGTTTATTTACCAGGATTGCCGGCTATGAATATGCTTGGAAGCTCTAGTTCAGCACCTGGAGGAACACTATCTAAGAACCAATTGCAGGCAGGAAGCAGTTCGTCTGGTTCTCCAGGAATGCGACATGATGGTAACTTTGGTGAAAATTCTCTATTTGACATCAATGATTTTCCTCAATTAGTTGGGCGACCTAATTCTGCTGGAAATATTCAGGGGTTATATGGTAATGCTGACATGCAAACTAAATATTCTGAATGATAATATTAGTTAACTAACTTTTCTCCTTTATAACAAATGAAGGACCTCTAAGACAACAAGCATTTGGTATTAATGCTGTTCAGCAAAACCAGGAATTTAGAATCCATAATGAGGACTTCCCAGCTTTACCAAGATTGGAAGGTACTCTTACTCTACTTTTTGTTTCATTATTTAATTCTTTATGTTATTCAGACAGTTCCTTGCCAAGTACCTCATGCTATAGGTTTTTATTATGTCTTGGTACTTTGTTTGAACATTACCTCATGCTCTGAATGTAAGGTATGGAGTTGCATCGCAAGGATCATCTTCCTAAGAATGCAAATATTATGCAAGCACAACATTATCCTGTGAGTTTTTTTCTAAAAAAATAAAAATTGTAATTCCAACAACAGTTTTATCTCCTTTTCCTTAAATTTCCATTACATGTGATTCTACAGATGGGCAAATCATCTGGCTTTAACACAGGCAGCAGTTGTCCACCCCGTAAACAACATAAGCAGACAGCTAATTCGGTAAGTTACCTGTATTATGATTTTCTTTTACCTCATGACCAGATAGTCAAGATTGAAAACACCACCATTGGTGAACACGACTCTTTTTTGTTCATGTACCTTTTCTTTATGGGGAATAGTAAGTAAGAATCCTACAAAATAATTGGTAGCAGGTGCCTGCTGAGCTTTTCAAATATGGACTGACCATACTGATTGTGTTTATTAGGTTCAAAATACTGGGCCTGAAAATGTTGGACCAAGGCCAGTAAATTCTCCAAGGTCGCCTTTAAATCCGAGGCCTCGTGAACAAGTTATCCAGCAAAATCATGAACCACAGGCTCAGAAGTCAGTTAGGCTGCAGTCATCTTCCGGCCCAGAGTCTCACAAGGTTCAGAGTCCCAAGTCTTCTCAGAGAACTGATACCACACTAGAGTCTCACAAGGTTCAGAGTCCCAAGCCTTCTCAGAGAACCGATACCGCACCAGAGTCTCACAAGGTTCAGAGTCCCAAGTCTTCTCAGAGAACTGATACCGCACCGGATCCATATGATCCATATGGCTTACATGGACTACTGAGGGTAATGAAGTTGAAAGAGGAGGGACCGGCATCTCTTGCTTTAGGGATTGATTTGACAACACTAGGGTTGGATATGAACTCTTCAGATAATCTTTACAAGACATTTGGCTCTCCTTGGTCAAGTGAGCCAGTTAAAGAAGAGTATTCTTATGAAATTCCGGATTGCTACTCTTCTATGCAGCCTCCACCCCTGCAAGTAAGACCCTCAATTTTCGAGTTACCTTCTTTTTTCTTTTTGTGAGGGAATGTTTAGGTTAGCATTAATCTTGTTGTATCTGACATTACGATTTATCTTCCTCTGCAGGCGTTGCATTTTCTGAGGTTTCACCTCATGACACTATTCTACATCTTCTACAGGTACTTAGTTCAATCAACAGTGAATTCCTGTGTTAGTAGGCTATGCATTATTTGACTGTCTTTTGTGCAGTATGCCACAGGATGCAGCTCAGTTATATGCCGCGAATGAAATGTAAGCACAAAACCACAGTTCTATATTGTTTTCTCATTTGCCTGTCATTTTCAGTAAAACGATGGCCTGGTATGCCAGATAGCTCAGATTGTTGCTTCCATTTCTTCAGATGCAAATACGGGTGGGTTTACCACAAAGAGCTGCGTCAGTGGGTTAAAAGAGCTCCTAATACGACCCCTCTCGTCAAAACTACAACTTATGAACAAGGACTCTGCTATCTTTTTGATGCCAACATTTGGGATGCAATTCCTAAGGTAAACGTCCGAAAGAAATTCTGACAGATATTTTCAGCCTTTTCCGATAGCAGAAGAAAATATATCTGAAAGTTGGTTGCAGGACAACTTTATTCTCCGTTATGATGATATCGAGAAGATACCTGCCCTTCCTCCCCTTCTTCCTGCCACCCAAAATCCTGCCACCCAAAATGGTAGTGTAAGAATAAACAAGGTCAGATTTGGGAGTCCCAATAGACGTTTTTTTTGTGCACAATGTCAAAATAGTGTCATAATTATGATTAGAAAAAGTGCCATAATTCCCTTTTCTGATGTAAGTTTGCATTTGCAGCCATTGCAGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020076