BGIOSGA020213

From RiceWiki
Revision as of 03:05, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA020213| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA020213, complete gene.| tag = OJ1087_...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA020213

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA020213, complete gene.

LocusTag

OJ1087_C03.3

Ensembl Transcript ID

BGIOSGA020213-TA

Ensembl Protein ID

BGIOSGA020213-PA

Length

5032

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 5

Location

Chromosome 5:27331878..27336909

Sequence Coding Region

27331878..27332035,27332576..27332661,27332746..27332823,27333519..27333631,27333706..27333771
,27334581..27334682,27334764..27335313,27335540..27335745,27336467..27336630
,27336756..27336909

Genome Context

<gbrowseImage1> name=IndicaChromosome05:27331878..27336909 source=RiceIndica05 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome05:27331878..27336909 source=RiceIndica05 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGACTGGGACGGGGTCCCGGCGAGGGAGCGGCGGCAGATGGAGGAGATCCTGCAGCTCGATATGGAGGAGCTCAACGTGGAGATGGTCGACGACGACGGCTCCTCCTCCGAGGAGGCGAACGGCGGCGACGACGGCGCCGACGCCTTCCTCAGAGATACCGACGGGGAAGGAGTGGCTAGCACTTCTGGACAATTCACATTCAACACATCTCTAGCCTCGTTGCACACCTATCTTGGTGAGGTTGATGATACACGGGGTCGAGTTTCTCTCTTAGATGGTGGCACAATCCTCAGCTTGCCAATGCTATATCTTCAAGGTGTTGTCCTATTTCCTGGAGCTACCCTGCCTCTCAGACTAATTCAGGGTAGATTTGTAGCAGCTGTTGAGAAAGCTTTGAGGCAGGTCGATGCTCCATGCACAATTGGTGTGGTTCTCATGTACAAGAGACACAGTACTCGACATTATGCTAATGCTTCAGTTGGAACAACAGCCGAGATAAGACAACTTGGGAGGATAGATGATGGTTCATTAAATGTTGTAGCCCGTGGGCAGCAAAGATTTCGTCTGAAGCGTCATTGGATGGATGTTGATGGGGTGGTGTGGGGTGATGTCCAAATCATTGAAGAAGATACTCCTTTAAGAACCCCAAGGGGTGCATTTGCACAGCTAGCATCATGTAACAGTTTACGGCAGCATACCTCCTCACCAGTTATCAGTTTGGATGTCTCTCCAATCAAACAACGGGATCATGTGGATTCAGAATTGGATTGTGGTACACCATCACCTAAAAGCACTGCAAGCAATCATTCAGCGATTGATTCAAGGATGTGCCATTCAGATTCACGATCCAGCAGTTCAATGAGATCTTCTAATGAAGATGGGATTTTCATGCATGAGCAGTTTTACAGCCAGGAGCTACATCCTTTAAAAGGAAGTGCAGCAGTTCAGTCAGGCGAGAATACCAACATGGGTGAGGAGGATTTTTGTTTAACATCGCTCAGATCCTTGTCAAGTGCAGGAACAAGAGATACTAAGGAGCAGCGTCAGTACATTCTTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACGATTCATATGCACTTGCTCGTAGGGCTGCAGACCTCTGGAGACAGATAATCACACACCCAAGCATGGATGATTACGTGAGAAAACCAGATCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATCGTCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAAGTCTCTCATAGCAAAGCGTAGCGACATGGTGGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGATACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATCTGCGACCGAGATCCTTCTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCACAAGAACTAGATCAGGACGAATGA</cdnaseq>

Protein Sequence

<aaseq>MADWDGVPARERRQMEEILQLDMEELNVEMVDDDGSSSEEANGGDDGADAFLRDTDGEGVASTSGQFTFNTSLASLHTYLGEVDDTRGRVSLLDGGTILSLPMLYLQGVVLFPGATLPLRLIQGRFVAAVEKALRQVDAPCTIGVVLMYKRHSTRHYANASVGTTAEIRQLGRIDDGSLNVVARGQQRFRLKRHWMDVDGVVWGDVQIIEEDTPLRTPRGAFAQLASCNSLRQHTSSPVISLDVSPIKQRDHVDSELDCGTPSPKSTASNHSAIDSRMCHSDSRSSSSMRSSNEDGIFMHEQFYSQELHPLKGSAAVQSGENTNMGEEDFCLTSLRSLSSAGTRDTKEQRQYILPKQHFQAPLSFWPRWAYQMYDSYALARRAADLWRQIITHPSMDDYVRKPDLLSFSIGSKLPVSESVRQKLLEIDGISYRLRREIQLLKAFNLIKCRCCKSLIAKRSDMVVMSTDGPLGAYVNPHGFVHETITVSRATGLALDGNPSTVHSWFPGYSWTIASCTDCESNIGWLFKATKKNLRPRSFWGIRSSQIADDAQELDQDE</aaseq>

Gene Sequence

<dnaseqindica>1..158#699..784#869..946#1642..1754#1829..1894#2704..2805#2887..3436#3663..3868#4590..4753#4879..5032#ATGGCGGACTGGGACGGGGTCCCGGCGAGGGAGCGGCGGCAGATGGAGGAGATCCTGCAGCTCGATATGGAGGAGCTCAACGTGGAGATGGTCGACGACGACGGCTCCTCCTCCGAGGAGGCGAACGGCGGCGACGACGGCGCCGACGCCTTCCTCAGGTCGGGCGACGCCCCTCCCTCGTTTCGCCATTTTTTTACCCTCTCTGATGCGACCTAGGGTTCTCTAAGTAGAAACTGGGTCGCAGCGTACTTGGTTACCTGCTAGGGGTGGTGGTACTGTGCATTTCTACTAGGATTGAAATACGTCAACCTAAAATTCAATTCAACCGATAGCATTTCCTGTCCGAGAGAGTGAGGATGGGAGGCGTTAGCTTATGATTTGATGATTGTTTCCCTGATCTCGCATGTGGAGGATTGGTGATTTCAGCTCGGGTAGACTAGAGAGCGTAGGGATTTGAGGGAAGGGGGTTACTAGGGGAAGCCACGATCCTGGTCAGTGTGTACCCTTGAGCCTTGACCAAAGTTTCACTTTGGGCATATTGATTTACTCTCTGATTTTTTCAATTTATTGGTGGGTGTGCTGTGTGCCACGATATATCTGTAGCTCATGGCCAGATACCTGGAAAATTTTTGTTTGTTAGTCTTAACTATGGTTTTGAGAGATTTCACATTGTTCATTTCCTAATTCCTGATTATCAGAGATACCGACGGGGAAGGAGTGGCTAGCACTTCTGGACAATTCACATTCAACACATCTCTAGCCTCGTTGCACACCTATCTTGGTGGTAAATGTCCTCGCTATCCTTGCTATATGATGTTTGATGCTGATAGAAAAGAAAGTGTAATAAGACTCTTTATGTGTCACTCAGAGGTTGATGATACACGGGGTCGAGTTTCTCTCTTAGATGGTGGCACAATCCTCAGCTTGCCAATGCTATATCTTCAAGGTAGGTCTTGTATGTTTGTATTTTATTTCGTTAATCCGCAATCTTGATTATCATGCTAGCGTTGAAGACACATTAATTAGTGATCACAAATTTTTTTTCATGCCATCATTTCTCCATATTATTTTGTCTGCATGCCAGCCCTTCTAAGTTACATTCTTTTCTTTTGAACTCACTTGACATAACCTGGTCTATTAACGTATCCACTGTTATTGTTAATGTTAAAAAGAGCTTGTGCAATACTACTATCTATTTATATAGACTTATTATTTCAGAGGAATTGCACATACCATTTTTAGTCACTATTTCCTTTATATTGCAGTTATACAGCCATGTGAATATACGGAGTACTTTGTAGTGAGTTTAGGACCTGAGGTTTCTTTTGATAATTGATAATTTCTTAATGCATATGACTAGAGAAGTGGCATCCAATAATCTAAAAGGCTACAAGCATCCCTAAACAGTGTTGTTATGTCGACATTTTTCTGTTCCAGTCCTGCGGGTTCATGATACAATTGGATATTAACTCCATGGGCAGTGAAATATATTCTTAATTTTAAATCTGGAACATAAGAACAGGCACAAATCCTTACCTGTCTCTCTCCTGACTAATGCATAACAGTGATAGTGTAAATGCGACAGGATTTTTCTGGTAGGTTATCAAGCATCAAATTTATTATAATATGAATTTGTTTCAGGTGTTGTCCTATTTCCTGGAGCTACCCTGCCTCTCAGACTAATTCAGGGTAGATTTGTAGCAGCTGTTGAGAAAGCTTTGAGGCAGGTCGATGCTCCATGCACAATTGGTGTGGTAGGTGCCAGTCTGTTGAAATTAACTAATTTTATTTGTTGAATTCCTTTCCAATGACGCAGTTTAATTTTCAGGTTCTCATGTACAAGAGACACAGTACTCGACATTATGCTAATGCTTCAGTTGGAACAACAGCCGAGGTGTTGTACATTTTCTCTGCTGTGCTTCAAGTTAGAATTTGTTTATCAGTTAGTCATTTTCACCGATTCTTCATGTGGTTTGGTTGTTTTCTGTGCTGCCAATTGAGCTTTTCCGTAGCCAGTTCCATCATCCTTGGGTGATTTGTTATTATTTCTACAGGACACATAAGTTACCCTCTCGTCACATTTTGTAATTAAGATGATCTGCTTAATAAATAAAAACATGAGGGAGTTAATTTATATCATTCAAGAATCAGGACCCAGTCTTAGCAGTTAGCATTTAATATTTCTTGTAAATGGGACAATTGAATCATTCATTTAGAATAGACTGATATCCAATATTTCAGAATTTCCTTCACTTGGTCACAATATCTCTATCAAACTTTTGGAGAATCATGTACTCATCTAGTTTTCTGATACTTCACAAGATCTAGAAGACCAACAGAACATATAAAGCCCCATCGTTTGGCTTATCTGCGGAATAAGCCAAACGGCGTATTTGCAAACGAAAAGTAATTTGTGAATAAAACTTTTATATACGTGTCCTTAGTGATCTAAAAGCAAAGGCTGAAAAATAAACTTCGATGAGAAAACCTCAAAATCGGCTTCAAATTTAAGGTTGAAAATTCAAATTTTGGCTGATAAGCATAAGCATAAGTGAAAAGATGAGGCCGATATGCAGTGTGATGTCTTGTTTACATGTCAAGCTCGGTCATTAGCCCCTTAGTATGATTTATGTATAAAGTGATGTATAATTCCTTTCGAACAGCCTCACAAGGTAAGCTGGTATTTTGTTATTTCTTTAACAGATAAGACAACTTGGGAGGATAGATGATGGTTCATTAAATGTTGTAGCCCGTGGGCAGCAAAGATTTCGTCTGAAGCGTCATTGGATGGATGTTGATGGGGTGGTAAGTATAAATTTAATTGAAGATATATTATTCTGAATTAGGAGCTGGAGAGAAGTTAGGTTCATTTTTCTCACTCAACAGGTGTGGGGTGATGTCCAAATCATTGAAGAAGATACTCCTTTAAGAACCCCAAGGGGTGCATTTGCACAGCTAGCATCATGTAACAGTTTACGGCAGCATACCTCCTCACCAGTTATCAGTTTGGATGTCTCTCCAATCAAACAACGGGATCATGTGGATTCAGAATTGGATTGTGGTACACCATCACCTAAAAGCACTGCAAGCAATCATTCAGCGATTGATTCAAGGATGTGCCATTCAGATTCACGATCCAGCAGTTCAATGAGATCTTCTAATGAAGATGGGATTTTCATGCATGAGCAGTTTTACAGCCAGGAGCTACATCCTTTAAAAGGAAGTGCAGCAGTTCAGTCAGGCGAGAATACCAACATGGGTGAGGAGGATTTTTGTTTAACATCGCTCAGATCCTTGTCAAGTGCAGGAACAAGAGATACTAAGGAGCAGCGTCAGTACATTCTTCCAAAGCAACATTTTCAGGCACCATTATCATTTTGGCCTCGGTGGGCTTATCAAATGTACGATTCATATGCACTTGCTCGTAGGGCTGCAGGTAAAGTACTCCCATATTCATCAAACTGAGCCTTACAATGCATTCTTGTCATTCATGGATTCTTAGCCCAACGATTGTAAATTCTTATGTTTTATAGATACCACTCCACTAGTGTTTCCCATCAAAAAAGAACTTTTTATTGGATGATTGATCGTTTTGAGTGTTATTGAGCATCTCGCTCTGTATGTTTATTTTAACCAAAATACACAATTGTCATTTGCTGCAGACCTCTGGAGACAGATAATCACACACCCAAGCATGGATGATTACGTGAGAAAACCAGATCTTCTGTCATTTTCCATTGGAAGCAAACTTCCTGTATCAGAATCTGTGAGACAAAAGCTACTGGAGATTGATGGAATCTCGTATCGTCTTCGAAGGGAGATTCAGCTTCTCAAGGCCTTTAATCTCATAAAATGTAGATGCTGCAAGGTAACTATCTACCATGTTTGGAATTGCTAATTTATCGAGCTTCTGATTGGAAGTAATGGACTTATTGTTGGCCATTTCGTTACTACTTTAAAAGAAGGTGACTTGTTTATGGTGGTGTTGTATGTTAATCATATGAGTCTGTCACCCGACAGCTCACCATTGCAATTTTTTGGACAACCCCTTAATTTTTCTTGAATTGCACAGTAGTTAAATATCTAACTGAATACACATACACAGACACACAGTATATGAGTTGGTCTATAATCAAGGAGTTTAAGCACTGTCAAGTTCTCCCTGTAGCGAAGTTATAATTCTGTTAATTGGTATCAACCACAAGTATTTAGCTAGTTTTCCATATAAAATGGATAACTATTCTAGTTCATCTGTATCGTAGCAATTTCATTTACCATGTCATGGCCTGCTAAATTATCTGTATGTACATCCCATTTTCATTTTTCAGCAGGGTATGACATGGTACAGTTTGTCGTTGTAGAATGCTGCAGCTGCAGCATTGGAAGAATTAGCACTAACATAAAATCAAACTACTTGATAGTTCATATTGATTTGCTGATTAGGCTCATTTGGCTGCTAGGAAAACAATGCTCCATGTAACCTGGTTTTCGTTGATCATAAACATTATTTGGAAATGGCGTCTAGTTACATCAAAGAATTTCAATACAAAGTTTATCACTCTGTGTTGACATGATTTGAACTATGGCAGTCTCTCATAGCAAAGCGTAGCGACATGGTGGTGATGTCTACTGATGGTCCTCTTGGTGCGTATGTCAATCCTCACGGTTTTGTCCATGAAACAATCACAGTTAGCAGGGCAACTGGGCTTGCTCTTGATGGCAATCCTTCAACGGTTCACAGCTGGTTTCCAGGGTAAATCTACAGTTTCTCCTTGTTCTTTGTAATCTTCATGTCCATCATACACCCTTTAACTGTAAAAAACTAAGTTCATGCATGATTTTCTTCTTGTAACCAACTTTGTTTCTGCTGCTATGCAGATACTCGTGGACGATTGCATCATGTACGGACTGTGAGTCCAACATAGGCTGGTTGTTCAAAGCAACCAAGAAGAATCTGCGACCGAGATCCTTCTGGGGGATCCGTAGCTCCCAAATTGCAGATGATGCACAAGAACTAGATCAGGACGAATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA020213