Os12g0116400

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Revision as of 10:19, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0116400| Description = Similar to WRKY transcription factor 46 (Fragment)| Version = NM_001189831.1 GI:297728792 GeneID:9269857| Length = 3...")
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Gene Name

Os12g0116400

Description

Similar to WRKY transcription factor 46 (Fragment)

Version

NM_001189831.1 GI:297728792 GeneID:9269857

Length

3378 bp

Definition

Oryza sativa Japonica Group Os12g0116400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:801620..804997

Sequence Coding Region

801620..801648,801838..802283,804653..804763,804847..804864,804918..804997

Expression

GEO Profiles:Os12g0116400

Genome Context

<gbrowseImage1> name=NC_008405:801620..804997 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:801620..804997 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcactcgactctgttccatcctaccccagcgatcttggatccagcagggccaggacgccgcagcagcaaagggtcagcaaagagcctccccatgtccccaggaaggaggagcggacatggacgaccgacacctacgcgccgtacgacgacggccaccagtggaggaagtacggcgagaagaaactctccaattccaacttcccaaggttctattacagatgcacctacaagaatgacatgaagtgccctgctacgaagcaagtccagcagaaggacactaatgatccaccattgttctcagtcacttacttcaaccaccacacctgcaacagcagcccaaagatcgtaggcagcactcctgattctactgtgcagtcgaggaaagccatttcgatctgcttcaattcacatggcaaaaccggtgaactgcccacattcttgtcaccatcagcttcattgttgtcgccgagcatgcagccgtacagttccaaccagcaacctgacatgaacacctacagtcgccagtttcattgggcagacacatcgtcatctacaagctatgctccggttaagatggaggcggacgattatgcggaagcaagtgcttcgcccagtacaaccggtgctctgtcgaggacattgctgccgatcgattcaagccagatttttttgcttgaatga</cdnaseq>

Protein Sequence

<aaseq>MALDSVPSYPSDLGSSRARTPQQQRVSKEPPHVPRKEERTWTTD TYAPYDDGHQWRKYGEKKLSNSNFPRFYYRCTYKNDMKCPATKQVQQKDTNDPPLFSV TYFNHHTCNSSPKIVGSTPDSTVQSRKAISICFNSHGKTGELPTFLSPSASLLSPSMQ PYSSNQQPDMNTYSRQFHWADTSSSTSYAPVKMEADDYAEASASPSTTGALSRTLLPI DSSQIFLLE</aaseq>

Gene Sequence

<dnaseqindica>3350..3378#2715..3160#235..345#134..151#1..80#atggcactcgactctgttccatcctaccccagcgatcttggatccagcagggccaggacgccgcagcagcaaagggtcaggtacatatctatggctaccattcttttctcctccatcgatttcttgcttgcagcaaagagcctccccatgtgtatgtgtagttcttgatctgtttctctcctttcttcaatttgtggtgggttctgtgatgtgccattgattctgatatggtagccccaggaaggaggagcggacatggacgaccgacacctacgcgccgtacgacgacggccaccagtggaggaagtacggcgagaagaaactctccaattccaacttcccaaggtaccttccgccctccatttcttttttctcacttcatttccttgccccaaaattactagacttcatgcatgcatctatttttctttccctcaaaggtcatattttttactgtcttccatggttagaatctgcagaacggttaatttcagattttactagattcaccaaagctaattttaaggacaagcagagtagttgcattaggtgagtgaactgtgggtggtgatctgaaaccttggggaatttcaagttcccctttgaattttggcaggaaaattttcttcatgccatcttggtttctttcgttttggccttttcggtagttctggtagaacagctcctactcaccaataccttccagaatggaagtgtgttagtgtggtccaaacagagctgttaacaggctccatatgtgtgcttaattagtgtttacatcttgagagcgaatttcagttgaaaccggagaacaaatctagcagggactagttctgctcatgtaactcagtaactgcgctctcatgttcacatttcttaaatatttatgggtatagcaggagtcttatttatggggccaaactatagtctttgtttgtgcagattgtggtttactataacccaaatcatgtcgatgcctagtattgtgtccattgtatatcagcagatggtttggtcaacgcattaatttgggttcttgaaatgaacattcttgtgttctgtggacacaaattaggctgcatggttgtccgctagtcatctcttggtagaattgcgaggggcaccttttcggtagtttggtagaatagctcctactcaccaatttcttccataaccaaagtgggttagggtggtccaacaaatctgttaacaggctccagatgcgtgcttagtgtttacatcttgagctaatttcagttgaaaccggaaaagaaatctagcaaagactacatctgttcatgtaaatgaactcacatgttcacatttccttaaatatttatggatatagcaaaagtctcatttttggggccaatctctagtctttgtttgatcagctggtggtttactataacccaggtcatgtcgatggctaatactgtgtccagtgtttgtatatcagcagatggtttggtcaatgctttaatttgggttcttgcaaagaacactcttgtgttctgtggacacaaattaggctacatggctgtcttctagtcatctcttggtagaattgcaaggggcacgtgtcgagcctgtcggcagatgcctttagtgagcaagattaaaaactagtaaattgaccatgggaaaagaaccttcatagcagcaatctctttggcaatcgacaactcaacaagacatataaaaatttgaaaagtgagaccatataaataaaaaatatgcaagtggttctcttttattgcctgtcatcagcgacttgtttgatatctaatgttttcctaccagaatatatactactggtgtttttcaagcacattttgtttgcaaatattagcgtgcatgccgacagtctccacaaactcttttttacttccttggagtttgattggcatgcagcctgagggaagaccctacatatcttgtttgctcacaagagcttgctaatagttgcagtcatttctttttgcaaaaggtaatttatgaaaggtctgaaaagtatgtgttggcaaccactccgcctaatttaggtagagtaaatgttcgtggagaaaagtgcaaaagagacatgatttaagaatacaaatgtttttcctgttgtcttaaattaaggtttgttacactgaatgacactgcacatatatatgcaaactgtaaagtaccacggttcaagaactggtaaagaagaataactcaagttggtaccctaaaggtgagattgcgtgaagatgagttgaagaatgtgttgttcaacctttcaacttggaatatagtaggaatgcaggatagtgctggctttggtgtcaccaagaaattctgaaaaatataccacgtaatttttgtaagtaaacagatcaactaagttttctgatggcattctgaaaagtatggtaataacacattgccaagcggcagatcggaaggtgatcccaaaagagagaaaaaaaaagggaaattccactgtatgctggaatggacagtagtttcagtgcagtcaccatcattctaaataaagataagctaaaacggtgtataacagcagcacacagaatcaaaatttctgctcttgaaggcaactgcatttgtactccctaaatgctacctggaaaaaaaaccaatcccttatctgcagtaatttgctcttaggatttccagcaagaaggtattgagaatttgagatcatggctttctatttgcaggttctattacagatgcacctacaagaatgacatgaagtgccctgctacgaagcaagtccagcagaaggacactaatgatccaccattgttctcagtcacttacttcaaccaccacacctgcaacagcagcccaaagatcgtaggcagcactcctgattctactgtgcagtcgaggaaagccatttcgatctgcttcaattcacatggcaaaaccggtgaactgcccacattcttgtcaccatcagcttcattgttgtcgccgagcatgcagccgtacagttccaaccagcaacctgacatgaacacctacagtcgccagtttcattgggcagacacatcgtcatctacaagctatgctccggttaagatggaggcggacgattatgcggaagcaagtgcttcgcccagtacaaccggtgctctgtcgaggacattgctgccgatcggtcagtcaagatgcatcgagtatttccatttcttgtgatgattttgatggaaagtgaaggagatgcatatacattctgaggagcctcttggatggtgccagatagggttttatattgggaggtggggatgttgtgctcatgagattccatatactagtggcattatgttgttttcttctttgcatgtagattcaagccagatttttttgcttgaatga</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0116400, RefSeq:Os12g0116400