Os09g0364000

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Revision as of 07:23, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os09g0364000| Description = Zinc finger, CCCH-type domain containing protein| Version = NM_001069532.1 GI:115478806 GeneID:4346865| Length = 553...")
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Gene Name

Os09g0364000

Description

Zinc finger, CCCH-type domain containing protein

Version

NM_001069532.1 GI:115478806 GeneID:4346865

Length

5537 bp

Definition

Oryza sativa Japonica Group Os09g0364000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 9

Location

Chromosome 9:12539288..12544824

Sequence Coding Region

12539310..12539414,12539492..12539774,12540043..12540164,12540293..12540414,12541115..12541232
,12542460..12542878,12543160..12543460,12543598..12543694,12544181..12544326
,12544437..12544565

Expression

GEO Profiles:Os09g0364000

Genome Context

<gbrowseImage1> name=NC_008402:12539288..12544824 source=RiceChromosome09 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008402:12539288..12544824 source=RiceChromosome09 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgccgctgcctcgccgtctccggcgacgccgccgcggatcctcctcgccggcgacgcgaacggccgcctccaccagctcttcaagcgcgtcacctcggtgaaccagtcgacggggccgttccacgcgctgctctgcgtcgggcagttcttctcccccgatgccggcgacggggatggcggcggcggcggggaggtcgcggactacctggagggacgcgccgccgtgcccatcccgacctacttcaccggggactacggccccgcggcgcctcgccttctcgcgaaggccgcgtccagcgcccgaggcttctcccccggaggcatccagatatgccccaacctcttctggctcagaggcagcgcccgcttcaccctccatggtttatctgtcgtttacttgtcgggaaggaaagggccaggagggcctggctgctacagccaggatgatgttgatgcactacgggctcttgccgaagagccggggattgttgatttgtttttgactaacgaatggcctgctggagtggtgaatggagttgatacttctaatgcaccttctcagatatcggatcctcatggatatgatcctgtagttgctgaattggttgctgagattaagccacgatatcatattgcaggttctaaaggtgtattctatgcaagggaaccatatgtgagtgattccgctgcacatgttacccgttttattggacttgctaatgttggaaacaaagagaagcagaaatttattcatgcaatttctcctactccagcatctaccatgtccagtgttgatattcacgcaaggcctccaaatactactttatccccatatatttctccagcaaagtcagttcctgttgaagaaactccaaagcgtcctgctgaggatgctgatttgcaatactggcgttacgatgtcaagaagcaaagacatggtgaagccggtgggaatcgtctatgtttcaaatttacatcatcaggatcctgtcctcgagggagtaaatgcaattataggcatgatgaggaggccagggagcattacaataggaatgtctgttttgatttcttaaacaaaggaaaatgtgagaagggtcctgagtgtaggtttgctcatagcctttctgatgagggtgctgttagggatacaaaaccacgtagcgaacgaagacgtgttgagagcagttgctggttctgcttgtcaagtccagatgttgaatcacatcttgttatcagcattggagaaggttactactgtgcacttgcaaaagggccacttgttccaaaccatgttctagttataccagttgagcactgctctagtacactaaagatgcccgtggaagctgaggcagagcttgggagatataaggatgctctggccaagtattttgagaaacaaggaaagatagctatatacttcgagtgggtttctcagcagtcccgccatgcaaaccttcaggctgttccagtaccattgtctaaagcatcaagtgttaaaaagatattccatttagcagcacagagactgggatttgaattttctgtagtgaatccagatggtgatgctaaccgcgccagggaattgttaagatcagagtgtgacagcaaatcaagcttgttttatgttgagctaccagaaggttcagtgcttttacatttggttgacagtaatgagaagttccctgctcagtttggccgtgaggtgttggctgggttgctaagcatggcagatcgtgcagattggaggaactgtaaggtttctaaagaagaagaaatccagatggtggatgattttaaacaagggtttcgtgagtttgatccagctgaatga</cdnaseq>

Protein Sequence

<aaseq>MAAAAASPSPATPPRILLAGDANGRLHQLFKRVTSVNQSTGPFH ALLCVGQFFSPDAGDGDGGGGGEVADYLEGRAAVPIPTYFTGDYGPAAPRLLAKAASS ARGFSPGGIQICPNLFWLRGSARFTLHGLSVVYLSGRKGPGGPGCYSQDDVDALRALA EEPGIVDLFLTNEWPAGVVNGVDTSNAPSQISDPHGYDPVVAELVAEIKPRYHIAGSK GVFYAREPYVSDSAAHVTRFIGLANVGNKEKQKFIHAISPTPASTMSSVDIHARPPNT TLSPYISPAKSVPVEETPKRPAEDADLQYWRYDVKKQRHGEAGGNRLCFKFTSSGSCP RGSKCNYRHDEEAREHYNRNVCFDFLNKGKCEKGPECRFAHSLSDEGAVRDTKPRSER RRVESSCWFCLSSPDVESHLVISIGEGYYCALAKGPLVPNHVLVIPVEHCSSTLKMPV EAEAELGRYKDALAKYFEKQGKIAIYFEWVSQQSRHANLQAVPVPLSKASSVKKIFHL AAQRLGFEFSVVNPDGDANRARELLRSECDSKSSLFYVELPEGSVLLHLVDSNEKFPA QFGREVLAGLLSMADRADWRNCKVSKEEEIQMVDDFKQGFREFDPAE</aaseq>

Gene Sequence

<dnaseqindica>23..127#205..487#756..877#1006..1127#1828..1945#3173..3591#3873..4173#4311..4407#4894..5039#5150..5278#acccaaaaacccaaaccccaccatggccgccgccgctgcctcgccgtctccggcgacgccgccgcggatcctcctcgccggcgacgcgaacggccgcctccaccagctcttcaagcgcgtcacctcggtaacctcctcctccgccgccgccgcgtcctcccctcccatctcgtcgtatcctctcaccggctgccgtcggcacaggtgaaccagtcgacggggccgttccacgcgctgctctgcgtcgggcagttcttctcccccgatgccggcgacggggatggcggcggcggcggggaggtcgcggactacctggagggacgcgccgccgtgcccatcccgacctacttcaccggggactacggccccgcggcgcctcgccttctcgcgaaggccgcgtccagcgcccgaggcttctcccccggaggcatccagatatgccccaacctcttctggctcagaggcagcgcccgcttcaccctccatggtttctctcttcgtctttccatttctcaattgtgttggactaatttgtttcattaacttaggcgtaaatactgtgctcatagatgagtagctttacatctccaatgtctgaagtaaaatgttaaacctgttcaattgcagcatcttttcttttgaagctgataaaatattccatgcgagctattgtagaaatgggctggaaatgggatcatcgaaacaaatgcttgctttagcaattccatttattggattttctcacctttcgttaggtttatctgtcgtttacttgtcgggaaggaaagggccaggagggcctggctgctacagccaggatgatgttgatgcactacgggctcttgccgaagagccggggattgttgatttgtttttgacatatccttttttctttctatggcattattatttcttagctgcttgtgttaaactgaggtgttgtcgtacatgaattctcaaagtatcaagtttggtgctgagttcccttgacgataatgagattgcactaacgaatggcctgctggagtggtgaatggagttgatacttctaatgcaccttctcagatatcggatcctcatggatatgatcctgtagttgctgaattggttgctgagattaagccacggtttggtttctgaattcatattttctatatccctccttgaagaagaaagtagtgttggtggtagtaattcagattttagagttcaaatccattgcactgatgttctccgggagtaacgaaaactgtaattttgtgataaaactgctgctaaatctgtagttttgtgatactatgccttaactctatagttttgagataaatgtgatgctaaatctatagttttgttatacacctccttaaatttgtagttttgcagtagtttggtcaaggtatttgtagttttgtgaaattcacacgaagaaccttccatatgacgttttattctcttttaggcttttagccttctaacaacaaattcacgaattaacattaaaggccaaacatgactgaattgccatgtatatatgtggtgtgtgagttaattctgaaatcagtgtgtgtatcacagtcaaatgccccttgtaacacaaaaggtgaaggacttcaatgcagaaattacatttatttctttgaacaatatgaagacatgcataattttcttttatccaagcaaatacactagtattaagctagtagtttaaatgttgactagactaactgaaagcataatcacggaatatgtttacatttatataagtctataagatacaatgccaaccaaaagtataccgaatttgtaacaaaagtctgtttcctgcagatatcatattgcaggttctaaaggtgtattctatgcaagggaaccatatgtgagtgattccgctgcacatgttacccgttttattggacttgctaatgttggaaacaaagagaagcaggtacatctatatttggccaaatcaacttagttcttcaaacatagtttctggttataattctactacattttcttgtattttgttcataatttagtatacatattaagttctagtactccctccgtttcacaatgtaagactttctagaattgcccacatacatatagatgttaatgaatctaaacacatacatatgtctagattcattaacatctaaatgaatgtgggcaatgctagaaagtcttacattgtgaaacggaggaagtattagttttcagttatatttatcattttcagaaatgaaaatcttcactgatttattagtgtatttcagaaacctgcaacttatatggttacaatatctgtttcctacatctttaagtcaggttttcagttagcaacaacttcaacaatcagtttccaggccttctggcaaagtgggtccacttatcatgcgcatggtcaagttgaccattacaatttaccatgtgtacaaactggacatgcacatatggctccctattggggctagggagaggagataacaatatgggtcctaggatcaaggtttaactaaaatagagttagttatgcacttacttgatggtggctttaccctgcgtggcgcactctcttccaagaccacgtcataagagcaactccagtgtggggcttaaaatgattttaatgcaaaaagatcgaactgtgtacactgtggcagtcgacgcatgcatgtcagagcaaaaatcaaactccaaagtatattcaaactcaaccgagtaaatagttcgttgccctgggccattggcacatgcaggcagggcagaatgtagtgattggaggaacttttttcaacatgggtcccacgattcgattcaacactacagctatcgaaccaaacctttattcaacttcggtggattgtagcagtcgaatcagcagtggagctgctctaaggccactttgcattgtaaatgccctagcagtcctgagttggccgtttgagaaatacaactgaacctgccttgtcaaatggtttagatggtagcagaattgcagttctgtgaacaaaatttgtgcactgattttgtggtagcagaattgctgaaatcatcccctgaagttgtagataactgatagttatgttaaatttctgttatcacatttactcttgatttgttgctattattcttaattgtctactcattattgcatattctttttcagaaatttattcatgcaatttctcctactccagcatctaccatgtccagtgttgatattcacgcaaggcctccaaatactactttatccccatatatttctccagcaaagtcagttcctgttgaagaaactccaaagcgtcctgctgaggatgctgatttgcaatactggcgttacgatgtcaagaagcaaagacatggtgaagccggtgggaatcgtctatgtttcaaatttacatcatcaggatcctgtcctcgagggagtaaatgcaattataggcatgatgaggaggccagggagcattacaataggaatgtctgttttgatttcttaaacaaaggaaaatgtgagaagggtcctgagtgtaggtttgctcatagcctttctgatgagggtgctgttagggatacaaaaccacgtaggtgagaaaatattccaaatctctcactctgtctgaagcacacatgcacaatctgccaccccacctactcacattgcacttttacaaattaccccttaaacttcttagtattaaatatcaatcaaatcctaaatggatagacatataaagttaaattgagtagtagtattataatatattttatatttttttatctatagcaaagcacaagcattcggctagtatactaagaattctgattatctaattgtgggattcaccctgtatttttgtttactacagcgaacgaagacgtgttgagagcagttgctggttctgcttgtcaagtccagatgttgaatcacatcttgttatcagcattggagaaggttactactgtgcacttgcaaaagggccacttgttccaaaccatgttctagttataccagttgagcactgctctagtacactaaagatgcccgtggaagctgaggcagagcttgggagatataaggatgctctggccaagtattttgagaaacaaggaaagatagctatatacttcgagtgggtttctcagcagtcccgccatgcaaaccttcaggtgaggacatttttttcctgatatgttgctccatgcttccatttaaatgatgctgtcatttggaatttggatgcttgtatgcgatctcatttgttttttgttcatactggatggtaatccactaaatttctgcgcaggctgttccagtaccattgtctaaagcatcaagtgttaaaaagatattccatttagcagcacagagactgggatttgaattttctgtagtgaatccaggtgaagttgtacctaactttatctctcttagtcagctgaatagaaaggggatagacaaaaacaatcttaggctgcgatcgttcccctgggttcccctgggttgggaacgtaaccctccggcacggaaaacggaatggtccattagcacgtgattaattaagtatttactaaatcttttttcaaaaatgaatcaatatgatttttttaagcaacttttgtatagaaactttttgcaaaaatgcaccgtttagcagtttgaaaagcgtgcgcgcggaaaacgaaggagaggggttgggaaccttgagtatagaacacagcctaaatgggctattcacacatcaatgagcatactgtgatgccaatacatcttcatgatgttgcttctctaaggaagtcttcctaaaagtttcaacaattgtgtatcacgtggccaagttttatgttgcttataattcgatttgccctgagctctctctttgttttcagatggtgatgctaaccgcgccagggaattgttaagatcagagtgtgacagcaaatcaagcttgttttatgttgagctaccagaaggttcagtgcttttacatttggttgacagtaatgagaagttccctgctcagtttggccgtgaggtatatataccatatgataatcgttaaggcctttttttgtctgaaaaataacctacatggggatggaaagaaaataatgatatcgtcgaaacctaactgtcaatctacaggtgttggctgggttgctaagcatggcagatcgtgcagattggaggaactgtaaggtttctaaagaagaagaaatccagatggtggatgattttaaacaagggtttcgtgagtttgatccagctgaatgacaatgtgcttaagttgctaatttgtcaccggacaagaacgtgctgctaaacttgcattgtatttttgtagttgaaagtacttaggtaggccatatttgagaaatggaccgactttgaggtccattattgtaatttctattgattgattcgggaacaatttttttttcagttaagagttaaaatttggccgtagtgccacgtttgttcttcgagacttctcgtatacaatgtgatgatctgaggcgatgggcagtggtcg</dnaseqindica>

External Link(s)

NCBI Gene:Os09g0364000, RefSeq:Os09g0364000