Os12g0133900

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Revision as of 10:20, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0133900| Description = Similar to Epa4p| Version = NM_001072624.1 GI:115487209 GeneID:4351433| Length = 5117 bp| Definition = Oryza sativa...")
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Gene Name

Os12g0133900

Description

Similar to Epa4p

Version

NM_001072624.1 GI:115487209 GeneID:4351433

Length

5117 bp

Definition

Oryza sativa Japonica Group Os12g0133900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:1662853..1667969

Sequence Coding Region

1663278..1663318,1663553..1663694,1663773..1663826,1663912..1663983,1664708..1664776
,1664883..1664924,1665022..1665090,1665255..1665392,1665516..1665626
,1665711..1665834,1666832..1666887,1667189..1667899

Expression

GEO Profiles:Os12g0133900

Genome Context

<gbrowseImage1> name=NC_008405:1662853..1667969 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:1662853..1667969 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgatggatttggacgagccgctcgacgcggagaagggcgaggcggcgctgcggcggctgcgcgacgccgacccggccctctacctctccccctccgccgacctcgccgccgccgcccgtgaggcctccaagcacctctacgcctcgctcgtccccttctcccccgcgcagccgcccccgctctccaacctcctcgcaggccccgccttcgacgccgagcagatttggtcccagattgagctgctctcccgccccctcatcccccacctgcgccgccagctccgccgcctcgagaagcaacccccgtctcagccgccgcctcgtacggaatcgaagtccgctgatgccgaagagaagtcagaggaggaggacgaggaggatggtgaaggtgacgaagaattggaggagttggacgatgtagatgatgaagaggagtcagaggaggaggaagaggaagaggaagaagacaaagaaggattggaggataaagcagggaatcaagtggaggacgagttcttcaagataaaggatctcgataagttcatggtaaagggggaggaggcggaatatggtgggggtgccaagcaagggaagaagaagaagaaaacagagaactggatggaagaagatagtgatgaggaggaagaggaggaccttgatgaggatgaggacaatgaggatgaagaagatgacgatgaacacttggacttggaagactttgacgatgaagaagaagaagaagagggtgcagttggagatataatgtataaggatttttttgaggaagctgatgaccaaaaagtaaggaagaaaggtggctccaagaaagttcaattcaaggatgaaccagatgaaccagaagttgatgacaaaaatgatgatggaaatgatgaacagggtttgtcaactcacgagaaggcgcgcctgaagatgcatgctaaaatagaggaaatggagaaagctaatcttgaacctagtatgtggaccatgcagggagaggttaatgcttccagcagacccaaaaacagtgctctagaagtggaccttgattttgagcacaatgtaagacctgccccagtaatcactgaggaagtcactgcttctcttgaagagatgataaagaaaagaataatagagggtcattttgacgatgttgaaaagccttctcccttgcaatttaaatccccaaaggaacaaaaggatctggacgaaagtaagagcaagaagggtcttgctgaactatatgaggacgattatgcgcaaaaggctggccttgcacctgcaccactttctatttcagatgaacttaagaacgaggcaaataccttatttaagagaatatgcttgaagttggatgcactatctcatttccactttgctccaaagccggtcattgaagatatgtctatacaagcaaatgtaccagctctagcaatggaggagattgcacctgtagctgtttcagatgctgcaatgcttgctcctgaagaaatttttgaaggaaaaggtgatgttaaagaagaagcagaacttacacaagctgagcgcagaagaagaagagctaacaagaaaaggagatatgcaggatcgcataaggagaggccagccaagatgcagaaagattaa</cdnaseq>

Protein Sequence

<aaseq>MAMDLDEPLDAEKGEAALRRLRDADPALYLSPSADLAAAAREAS KHLYASLVPFSPAQPPPLSNLLAGPAFDAEQIWSQIELLSRPLIPHLRRQLRRLEKQP PSQPPPRTESKSADAEEKSEEEDEEDGEGDEELEELDDVDDEEESEEEEEEEEEDKEG LEDKAGNQVEDEFFKIKDLDKFMVKGEEAEYGGGAKQGKKKKKTENWMEEDSDEEEEE DLDEDEDNEDEEDDDEHLDLEDFDDEEEEEEGAVGDIMYKDFFEEADDQKVRKKGGSK KVQFKDEPDEPEVDDKNDDGNDEQGLSTHEKARLKMHAKIEEMEKANLEPSMWTMQGE VNASSRPKNSALEVDLDFEHNVRPAPVITEEVTASLEEMIKKRIIEGHFDDVEKPSPL QFKSPKEQKDLDESKSKKGLAELYEDDYAQKAGLAPAPLSISDELKNEANTLFKRICL KLDALSHFHFAPKPVIEDMSIQANVPALAMEEIAPVAVSDAAMLAPEEIFEGKGDVKE EAELTQAERRRRRANKKRRYAGSHKERPAKMQKD</aaseq>

Gene Sequence

<dnaseqindica>4652..4692#4276..4417#4144..4197#3987..4058#3194..3262#3046..3087#2880..2948#2578..2715#2344..2454#2136..2259#1083..1138#71..781#cctccgcctccgcctccggtctcccctctcctcacacgctccggctccgacggacgattcccacccagtaatggcgatggatttggacgagccgctcgacgcggagaagggcgaggcggcgctgcggcggctgcgcgacgccgacccggccctctacctctccccctccgccgacctcgccgccgccgcccgtgaggcctccaagcacctctacgcctcgctcgtccccttctcccccgcgcagccgcccccgctctccaacctcctcgcaggccccgccttcgacgccgagcagatttggtcccagattgagctgctctcccgccccctcatcccccacctgcgccgccagctccgccgcctcgagaagcaacccccgtctcagccgccgcctcgtacggaatcgaagtccgctgatgccgaagagaagtcagaggaggaggacgaggaggatggtgaaggtgacgaagaattggaggagttggacgatgtagatgatgaagaggagtcagaggaggaggaagaggaagaggaagaagacaaagaaggattggaggataaagcagggaatcaagtggaggacgagttcttcaagataaaggatctcgataagttcatggtaaagggggaggaggcggaatatggtgggggtgccaagcaagggaagaagaagaagaaaacagagaactggatggaagaagatagtgatgaggaggaagaggaggaccttgatgaggatgaggacaatgaggatgaagaagatgacgatgaacacttggacgtaagcatttcgtaatcacatcccttgttaaattcttagagaccagtattagctctcataaagaagattgatatatagaaccactgatctagaagtatctcaggagtagacaccggaatttctgtagtcgcaaaagatagtatctgtattacctcaggaaattgagcatatggattaagttttaaaacagtttcccgcttgagctaataggcttatattgggagctagcattgggtatggtttaatgcaagatgcatgcttgctaaatgtgattcttaagtatcgttttttattaatatagttggaagactttgacgatgaagaagaagaagaagagggtgcagttggagatataatgtaagcctttatgctattttctgaaaatgctcatatcatgattgatagaatcacagaatgcgaaacagttcgggtttccgcacagtgtttttttatctttaagtgattatatactgggatatcaaatggttttaactacatttgaattgcttttttgaagatcggtatgatattcgtagaaatggaaatggtagtcatttataaatttgaattgtagaatcacttgaataattcttcacaaccttttcctattttatcattttcatgctcgacacataatttgatctgtttaagttaactgtcatacaatatgacctgtttagctcagagaagggcatacaaaggcaaatggagtaggaaaacaattggctccaaataatggcatggaatggactcaattaaattagaaaacattaagtatgtaagacaaacatattacattttcatgtaaattgttaaaaaaatgatgatagcacaagaaaatggatttatgaaaaaacaattagattaagcataaggcaaagaagaagtttgttgaacactaaaatataggtataaccacgtgtggcaatgtgggaatagaatgctgtgaaaaaaactgccacattcgcataactcataggataatagcaaaggatacctacaagtttatatgtcatgtacaaaaaggttgagacacaatatcaccctaaaaaacacagctttttagcatataacctaggcaaaactgagctgtaagttctgtctacttcttagccactgcaaatgtccctggaaggataagagatctgattagacaattccaagatctcaccatgcacataaatgcattacatcattctttcctgccttgtatttgtccagtggagcctttacagaagtttccatatgttgtattgactcagcaaagcttaatcgttatgcccagacttcggttgtatttaatatttgttcatttatagtattatgctttgaccagcaaagatgatttttccaggtataaggatttttttgaggaagctgatgaccaaaaagtaaggaagaaaggtggctccaagaaagttcaattcaaggatgaaccagatgaaccagaagttgatgacaaaaatgatgatggaaatgttagtcaagtactacacttactcacttcaatataaacaagttaggcacatgtatattatcagcatattcttccaattctgcaggatgaacagggtttgtcaactcacgagaaggcgcgcctgaagatgcatgctaaaatagaggaaatggagaaagctaatcttgaacctagtatgtggaccatgcagggagaggtaatatataatatgtttatccattcattagtttctagaacaaaacagatttttaactttgaaactgttctggtattaaatcatcagctcatggtaaagaaaccacttgaaattttcttgtaggttaatgcttccagcagacccaaaaacagtgctctagaagtggaccttgattttgagcacaatgtaagacctgccccagtaatcactgaggaagtcactgcttctcttgaagagatgataaagaaaagaataatagaggtatgtgtgttgtttcctttttggacatggcataatgggcagttttgcaacttggttaactttgttacagtgctggagaataaatttattctggacatatatttttgtatttgtggccttgtgctacttatactgagggagctttacttgttgattccatgtagggtcattttgacgatgttgaaaagccttctcccttgcaatttaaatccccaaaggaacaaaaggatctggtatacttttagtcttgtccaagaacataactcattgatgataacaataactaatcatgtaattgttgtcttgccgttatcaatattatttcaacaggacgaaagtaagagcaagaagggtcttgctgaactatatgaggtttgcactatcagaatacagcttttattttttatattcaaagaagttgctacttaagatcagtttaatgatgatttattgagggctggtgtttgtgtttgtacaggacgattatgcgcaaaaggctggccttgcacctgcaccactttctatttcagatgaacttaagaacgaggtgagtttagtcgctttctattataatatgactattggctttcatgggactaaggctgtactgtttctattgttaaggactttttttttcttttgtttaattgctgtgtgattgcatgtcatttgtttttagttaaaagcaagctgcaaaaagaagaaatcctacatgtcaaagaggaaatcttgagttcttctcattgaatacatgtcattctattatgacctccccccaccacacacacacactcacatgtaaaaaaaaaaaaaagaaatcttgtatcaatgcttgtcttgattgctagtgttgctactttattcaatattttcttctgtgtgtggtgatggtggcaaaggtacttgcaatgtctttgagaaagatcttttgaaaggaattgataatgctgtacctcatgagcatgcaattgattaaagtttgttttttttatggtagaagcagacatcgatttcttttgaaaaatagagaagtgattacttgtgatcacattgttgttaacttagtactaactatgtagcaataagcatgcaaatgggtcataccgtcatactcggtgatttttaaaactgtaattttttgaggtaccattatcaacttggtggtctttataaatttgttcccaccatttcattggtgctttatgcatattttttcccctgtaatgatattggaggcttgctgcattgacctaacttttgtttccacttaggcaaataccttatttaagagaatatgcttgaagttggatgcactatctcatttccactttgctccaaagccggtatggaatagtgacaagatattttacttacatttgtaatttctttcagcgaagttaactaacaaggtaaatattcacttttcaggtcattgaagatatgtctatacaagcaaatgtaccagctctagcaatggaggaggtaaataaaatccttcatttctccatgatgtttatacggttgagcatttcatgtcatgatttctctctctttttgcagattgcacctgtagctgtttcagatgctgcaatgcttgctcctgaagaaatttttgaaggaaaaggtgatgttaaagaagaagcagaacttacacaagctgagcgcagaagaagaagagctaacaagaaaaggagatatgcaggtaaatgtccttatgttttttaagatacattccttctagcttttagtataaatattctgacctgacatggataatgctcctacttcctcattcaaaacatttcattgttcattcaaacatggaagtagtttgagcaacacaaattcaattatagctagcaatatttccaattgcaaagttgggtacgagaatagattgaggcctgctagtttttcatacttttgtaccatacaggatcgcataaggagaggccagccaagatgcagaaagattaactcaatactggggaaacgcttacattatgaacaagtagtcagccatttttactgttcagcattacctcctgacccaaggatccattcatgatgagtattgtgcaaatggcaacgcagcattgacagacatggaggcagagagcaggctaggaaaggtagggtgaagggttgggctccaatgcttttgatcacaggatctgtactctggtggcacaacagacagacagctgttccaggtcaaagaccctgacgtaacccatctcccgtcccacaagaaaaggcgagcgaacgtattggaatgtgggatgggtaaaagaaatcttttgtttcttgttacactagtcgtagtagtagtgtagtaatgcaattttacaatatcattttttacactatagagtatcaatggagtgcatgtattcagaggc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0133900, RefSeq:Os12g0133900