Os12g0137500

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Revision as of 10:21, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0137500| Description = Similar to Avr9/Cf-9 rapidly elicited protein 271 (Fragment)| Version = NM_001072641.1 GI:115487243 GeneID:4351453| ...")
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Gene Name

Os12g0137500

Description

Similar to Avr9/Cf-9 rapidly elicited protein 271 (Fragment)

Version

NM_001072641.1 GI:115487243 GeneID:4351453

Length

3785 bp

Definition

Oryza sativa Japonica Group Os12g0137500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:1816725..1820509

Sequence Coding Region

1816725..1816883,1816992..1817114,1817227..1817313,1817442..1817546,1817744..1817905
,1818473..1818508,1818637..1818708,1819285..1819562,1820275..1820509

Expression

GEO Profiles:Os12g0137500

Genome Context

<gbrowseImage1> name=NC_008405:1816725..1820509 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:1816725..1820509 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtcgaggtggaggaagtcagcaacaagatgcaggcgcagatgcgcctccaccccgcggcggcggcggaggaggaggacgccgacctcccgctccctgccctcttcgacaaggcgtcccacctccactccctcgcctccagctcctccctcgatcaggaagggatccgcaagggggtcgacctgctgcggcggtgcgacgagatggtcagtaagctcggcctcttctcctccaacgagaccaaggatgacgtctccactgccaacctcaaatacctactcgtgccgtactaccttggggaaatgactgaaagggtagcgcaggaagatcggatcccagtccttaaggcgtcgcaggatcatttgaaggaattcatttctatctgtgaagcactggagcttatatcagaggatgagcttgaattgtctaggcagaagcaacctgataccatggcaaatcgaagagcacagaaggttgcacggttcaagcgccaaaaggctgcagaaacaaagctcctagaaatcaaggagaggaaagaaaggcgtaggcggtcattgagagcagctgctttatcagctcctattgaagctggggaggaagatgcttttgaggatgatggagaggaagaaagagaggcatggttagctactatctcattggctctatgcaaggcttttgaccttcttgacatgttaaagaaggaagaagaaatgcttctggcagtaaaagaaaggcaagcgaaggatggtaatgcatttgctcgtgaaatgcttgatgaacgtacaaaaaaggctgaagcatggcaccataatgctgccaaccgtgcaccatattccaagccagctgatccaatcacttgtgcaacatttgctcaagatgtcattgaaggtagagcaagtgtttcacaagcacatgagcacaaacaccagccgctgatatttggccctgcaagtcttgttggtggaggactaaccagtgaaagagagagaatggcagcacaagtttttcagccaagttacaggttgccaacgatgagcatagaagaagctggcttacgtgagatgaaaatgatggagaaatggcaagaaagaactgctaagatgattcaagaatcaaactccgcatggcacaaggatggcagtcggtcagcccaagaggatgaggacgctgaagaggagaaagcaagagcatgggatgactggaaggacgataaccctcgtggtgcaggcaacaagaagctcactccctgtggctag</cdnaseq>

Protein Sequence

<aaseq>MVEVEEVSNKMQAQMRLHPAAAAEEEDADLPLPALFDKASHLHS LASSSSLDQEGIRKGVDLLRRCDEMVSKLGLFSSNETKDDVSTANLKYLLVPYYLGEM TERVAQEDRIPVLKASQDHLKEFISICEALELISEDELELSRQKQPDTMANRRAQKVA RFKRQKAAETKLLEIKERKERRRRSLRAAALSAPIEAGEEDAFEDDGEEEREAWLATI SLALCKAFDLLDMLKKEEEMLLAVKERQAKDGNAFAREMLDERTKKAEAWHHNAANRA PYSKPADPITCATFAQDVIEGRASVSQAHEHKHQPLIFGPASLVGGGLTSERERMAAQ VFQPSYRLPTMSIEEAGLREMKMMEKWQERTAKMIQESNSAWHKDGSRSAQEDEDAEE EKARAWDDWKDDNPRGAGNKKLTPCG</aaseq>

Gene Sequence

<dnaseqindica>1..159#268..390#503..589#718..822#1020..1181#1749..1784#1913..1984#2561..2838#3551..3785#atggtcgaggtggaggaagtcagcaacaagatgcaggcgcagatgcgcctccaccccgcggcggcggcggaggaggaggacgccgacctcccgctccctgccctcttcgacaaggcgtcccacctccactccctcgcctccagctcctccctcgatcaggttttccctcgattcacccccccttctcctcatccccatcaaccctctcatggcggtttcatgcgagcgcttactgtggctgcttggtttggtttgggatatttgcaggaagggatccgcaagggggtcgacctgctgcggcggtgcgacgagatggtcagtaagctcggcctcttctcctccaacgagaccaaggatgacgtctccactgccaacctcaaatacctactcgtatgcttgtttcccccactacatctgcgtttagttccgtttctcttatcatatcatgtttgtgcatctgcgacatgtggttatatctgtgatttcgattgattttcttcaggtgccgtactaccttggggaaatgactgaaagggtagcgcaggaagatcggatcccagtccttaaggcgtcgcaggatcatttgaaggttatatcagtttgtcctgtcacatttagttgatttggtgcatatttgtcatgtctttcttatgcccttttcaattgggagcactctgtcatcacaacactcatgttttaatcactacggttacgcaggaattcatttctatctgtgaagcactggagcttatatcagaggatgagcttgaattgtctaggcagaagcaacctgataccatggcaaatcgaagagcacagaaggtgagccttggcaaaatattttttctcgaatatgttaaagccttaaaggggtcatcaatcattctgcaatttacaaacacaataagctgggatccaaatctcttattgagactgcaaaatctgggactcataatctgcttgaccttttccaaagtcggttaatttccactctaattttcttgtttgaccaaacctaggttgcacggttcaagcgccaaaaggctgcagaaacaaagctcctagaaatcaaggagaggaaagaaaggcgtaggcggtcattgagagcagctgctttatcagctcctattgaagctggggaggaagatgcttttgaggatgatggagaggaagaaagagaggttagcagttagcaccagacatttagaacccatttacgtagcaaatctgatcttgtttaccaaatggaaacatcatgatatattcttaaattaccacatagcatatttgaaaatactccaaactaaaattagctacaatgtactagaagtggaagaaaaatatttacttttccagaaaagaaaaggaaaggaaaggctttgttctgttcaatagaagatggaatttgacaaatttgatgattcaagataggttttaaaaatctcatagggaactgatcgcatttcctgaattagcccatttttgtggccatgaaacacacaacagatttgttctgtagtgccagattgtcaccaccaatcttttttcctgtaacaatatgatgcttaatgtctttcctatgctttttatatacaatctcttacttttgtgggcaatcaaccttttgggatctgtcgatgtgtgcttccaaagtttgggctccatgcctgtcataactttactttgatgtacaaatgacaaacggttatgctgtggttttgattcttttttttggttctatgttgcaggcatggttagctactatctcattggctctatgcaaggtttgtgttttgtgggcaagaatgattctcttatactgcttggaatgtttatttgcattcttttaagctactgtgctcgctttgttatcctgatcatcagacgtactcatttctacttcattttataggcttttgaccttcttgacatgttaaagaaggaagaagaaatgcttctggcagtaaaagaaaggcaagcgaaggtaaaacaaatgaataaactttgccaatgtcttgtcaatagtatctttggttgatcctttccagtatcatattgaccttttaacctttcttctgtaaccgttctgtaaccttatacaattattgaacttcgctttggataagccttgagcttatgttgtagtagggcttaccttcaccaagtagatagctggatagttgtatacagtaattccgtttgaaaaaaaatatacaccggattctgagtttggacatacaattaaattaattgtcataatatgataataacttgccattgcaagtatttcatcacacttctctctctctgtgtgtgtgtgtgtgtgtgtgtgcagagtgctgagtgttttgttgttactacatgcaagtaatattagatatttgattttgttttcatgatccttttgtagcactcgatggtagatattctaccgtaagaaaaaaaagaagattttttttatctttgctcccattgtgttgcatatctgtttcaataaactctgcacttacatggaggtttcctttagtaatgaaataattgcctgcttatgatgttttaggatggtaatgcatttgctcgtgaaatgcttgatgaacgtacaaaaaaggctgaagcatggcaccataatgctgccaaccgtgcaccatattccaagccagctgatccaatcacttgtgcaacatttgctcaagatgtcattgaaggtagagcaagtgtttcacaagcacatgagcacaaacaccagccgctgatatttggccctgcaagtcttgttggtggaggactaaccagtgaaagagagagaatggcagcacaagtttttcagccaagttacaggtatgctttaaaatactgctacgtacctggctgaaaactgcactgcttcttttaatatttgtggagggggcattatttgtggcaacttttaatgcatcatattagtcatactttgatatatttgtaggaactttgacctcctattccattgagcattactcgatgagcaaattatttcttggtaaatttgtaaagtggttctttacattgtatttgcttcaccacattagtatgtgactgtgtttattcaatcgtaggtgtttccttgttctattgttgtatgttctgccataagtctgtgacaaatttgtggtttacattgttgatatcattctttttttttcatgctggaaaggcaccatgttaaatttgctactcagtgcaatactagattcactgacaataaactgttgtcttgtactctgttgtgactacgaacgcttggtgcaatcgtatagatgctgagatagtgatttgtaggtgcgaccttatgtttagtcataatccatgaaaaattccaagaaatggtactattctgcaattgctcataaaaaacattagatttcccctgcagcaactaagtgttgagctgtagatcatctctattaaagtgatattgcattgttcagtaaaagttagtgaaaatatgcatatgagactatcctttgatccaattattctgtttccatttttcctgtatttggactattaggttgccaacgatgagcatagaagaagctggcttacgtgagatgaaaatgatggagaaatggcaagaaagaactgctaagatgattcaagaatcaaactccgcatggcacaaggatggcagtcggtcagcccaagaggatgaggacgctgaagaggagaaagcaagagcatgggatgactggaaggacgataaccctcgtggtgcaggcaacaagaagctcactccctgtggctag</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0137500, RefSeq:Os12g0137500