Os12g0143400

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Revision as of 10:21, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0143400| Description = RED-like, C-terminal family protein| Version = NM_001072669.2 GI:297612660 GeneID:4351481| Length = 6607 bp| Defini...")
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Gene Name

Os12g0143400

Description

RED-like, C-terminal family protein

Version

NM_001072669.2 GI:297612660 GeneID:4351481

Length

6607 bp

Definition

Oryza sativa Japonica Group Os12g0143400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:2127622..2134228

Sequence Coding Region

2127622..2127897,2128611..2128997,2129195..2129550,2129923..2130046,2130128..2130196
,2131190..2131238,2132222..2132336,2132854..2132903,2133000..2133137
,2134182..2134228

Expression

GEO Profiles:Os12g0143400

Genome Context

<gbrowseImage1> name=NC_008405:2127622..2134228 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:2127622..2134228 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtccaagaagaactactacaaggagaagctgatgcggcggaaagaggagaaaaaggaagaaccagagacacctaggtatcgagatcgtgctaaggagtgccgtgaagatcaaaaccttgactatgaacctacagagcttggttcatttcatgctgtggcacctcccggagcagatttaaggctagcagatgtacacaagatatctattgagaaaagcaaatatcttggaggtgatttggaacatacacatttggtcaaaggtttggactatgctctacttcacaaagtacgaagtgaaatagaaaagaagcctgatgcagaggatgggaaggatacacagacaaggtcaacaaaagaagatcaggcagtctcattccgcactgcaactgcaaaggaggatggacttaccaatgatatcccaacaactcttcacaggagcaaagctgattgcgctgttccagaggagatggtaactgtcagtgtggatggttctgtacttgataggattgctaaaatcatgtcataccttcgacttggatcatctgggaaagtcttgaagaaaaagaaaaaggagagggacacaaaagggaataacagtttagcaagtggtgactatgatgaggtagccagacctggccaaacaggttcttctctgaaacatcaatttcaaaaggacatgccgccgccgccaccccctcgaaataataacttaagcaagaatgaggaacagtctattcctgttgctagagcagatgaagatgacatttttgttggagatggagttgactattctgttcctaacaaggaaatgagccatagccctgtctctgaagatatggatgagtccccacataaccatcaaaagcagtcctatttcactgaagagaaacctgtctatgggcccatcccaccatcggaccctgctcaagcttggccacaaacgaatggatacgatgctattcaagctcaaatggtagctgctggatatcaaggggagtggtcaggctatcagtatggtgaacaacagatgccttatccagaacagtacatgcaacaaagcactcaggactatgatgtattagctgatccaaatatagcccaggatccaaggttgatgactcaagcagataaagatagaggtcttggttctgttttcaaacgtgatgatgaaaggcttaagcagctgagggaaaaagattcacgggagaaagatcctaattttatctcagatagttactccgagtgttatcctggttatcaggagtataatcatgagattgcaggcagcgatgaagaagatgatttgtcgaagatggacatgggtggccgggctaaggggcgtcttcataggtgggactttgagacggaagaggagtgggccaaatacaacgaccagaaggaagcgatgccgaaagctgcattccagtttggagtgaagatgcaggatggcaggaagacgaggaagcagaacaaggaccagaagctcacgaatgacctacacaagattaacaagatacttgcgaggaagaaaggtgacaaagatggaggggatgatggtgggcattatgatgatgatctacctagtggcaagaagcagcgcgcctga</cdnaseq>

Protein Sequence

<aaseq>MSSKKNYYKEKLMRRKEEKKEEPETPRYRDRAKECREDQNLDYE PTELGSFHAVAPPGADLRLADVHKISIEKSKYLGGDLEHTHLVKGLDYALLHKVRSEI EKKPDAEDGKDTQTRSTKEDQAVSFRTATAKEDGLTNDIPTTLHRSKADCAVPEEMVT VSVDGSVLDRIAKIMSYLRLGSSGKVLKKKKKERDTKGNNSLASGDYDEVARPGQTGS SLKHQFQKDMPPPPPPRNNNLSKNEEQSIPVARADEDDIFVGDGVDYSVPNKEMSHSP VSEDMDESPHNHQKQSYFTEEKPVYGPIPPSDPAQAWPQTNGYDAIQAQMVAAGYQGE WSGYQYGEQQMPYPEQYMQQSTQDYDVLADPNIAQDPRLMTQADKDRGLGSVFKRDDE RLKQLREKDSREKDPNFISDSYSECYPGYQEYNHEIAGSDEEDDLSKMDMGGRAKGRL HRWDFETEEEWAKYNDQKEAMPKAAFQFGVKMQDGRKTRKQNKDQKLTNDLHKINKIL ARKKGDKDGGDDGGHYDDDLPSGKKQRA</aaseq>

Gene Sequence

<dnaseqindica>6332..6607#5232..5618#4679..5034#4183..4306#4033..4101#2991..3039#1893..2007#1326..1375#1092..1229#1..47#atgtcgtccaagaagaactactacaaggagaagctgatgcggcggaagtaagtatcatttcacttagaaagatgtaactgattcgaggtagaaacaaaatctgtatgttttgggactgtaggagaaatttattaaaagtagattgtcaaaaaaataaaaagaagaagttgcaacatttgatggtatagttactgtttgcttgtaaaatagtttttgagatccagattctatgtagtagtatggtgtcatgaatttttgtaatcaaaacaaacgactgaagtcgttgttcttgcagttaatcttatagccaccttgttagacagtgattagggtctaaagaatcatgcaagtgacctgactcactgaaccatcccacttaactagatctttcgttcactttcaatacactgccttgcattactataaaaagaaaataattaggtgcagtggtgatttctttaccaatctgaaaaaaattacccgactgcccttatgtaatgtctgtattgtagacttgtagtagtactagtcttctatatcatattttgttgtaggagtatatacatatcacaagctgttgatccagaagaacagcgtttaaatggtaaacactaaagtgctaaaccaaggaagttttggaaatctaggattcatgctctccttacacttaggggaagtggctattggtactcagatccattgtagtcataggaggataatccatgcccttttggctgcatttcaagtcaagtttgcagaatctgtaatcatgtcaaagcaggaagtgataaactgattgattaatagaaatcttcttcttcgacctagaatgagtttttgcacacccgtgggtctggctaaaccagagactaaacctggccacctaagtaccagttttttgtgcacttaataaaaatccccattttttttactggtgtggccctgacaccctgtcatctcttgcactgctccactaggatgggaaccccccactgataaatcagatgcaactaaaactacttccggcattttagggttttagggagcaagtcaatttggctaacctaattctcccttattttcccatgcagagaggagaaaaaggaagaaccagagacacctaggtatcgagatcgtgctaaggagtgccgtgaagatcaaaaccttgactatgaacctacagagcttggttcatttcatgctgtggcacctcccggagcagatttaaggtaacagaccacaggtctcatttggctgacattttctttgcttggtttattatatgctcttctggaactcaacgtctgcaatttttcgtattacaggctagcagatgtacacaagatatctattgagaaaagcaaatatcttggaggttggtagtgcaacagtgttatactctttccttgtaagaaaatgcttttcatccttttgggaacaatttatgttgtgacttgtttttttaaacacttcatttatgtatagacaaatgctcatagatctgcacaaacggttaaaattctaacatagtttggttatgacatctgtggaaatgagaatttgaatctttctttggaactgttttatgtccacaaacttgtcgcggtttcaaatagctgcttgatttttaggttcctttttaatttgaaatatatagagctatcatatacttggtattttgacctagtcagtcagtagtatgcagtcaaggaatgaggttcgatagctcaaaactaaaggtggatagttcagttggacatgttttttaagactatgatatattgttgtagatttggagacttagatggctggcactttttctttaacttttttttgtctttcttctgaactatcatgttgattgatatttaatttcactttgtgtcttaaaggtgatttggaacatacacatttggtcaaaggtttggactatgctctacttcacaaagtacgaagtgaaatagaaaagaagcctgatgcagaggatgggaaggatacacagacaaggtatttcccacaatactgcagttttagtttcataccatttgatcatacctttttcctggtagttttgtactccctccatcccaggtaaaactgaatcctagaagcccaatgcagttttagtccaagcaacaaaagaccaaaacaccctcatcaagtacaaccatgattagcacttttcataaaaaaagttcctgcgaaattcgtgcccaactacttcctcagcctcccttcactggagatgatgcgttgatttcatttttttaattcacccggtgggtggtggacaacacaacacagggaaaatgataaagatgcaattagtgtttctcgatctctggcataggaatcgatttattgtgggacaaatgatcgaccctaggaatcaaatttttgtgggacggagggagtagtcatatggattaaggacaagctgtcagatccatgcttcatttcaaatgctgtaatatattacagtgattatcacttgcataatttttaagaaagtggggagttgattccaataattattatatgacacaacaaattgtcaagcttttttaggcctagtcctccttgtaactgtgaggtgaagttaagagatatccatttttcttttgttagaattttagtaggtgtttttatggtggatggtttcctattttctttatgaatactgtcgggcagaattattctgtgcattggaattatttataattttgctatgctttatagtggccgctggatcattctcagttaaacatgatttcctgtacagtattaaatctggatttgtattatcttaaaaaaatcaggactgtcattggaataatacaataattgtttataagcatttcatgatttgggatgtagcactatgaagtttggcctcatgtccttcatccttgtctggatgcacatcgtaagttagtatttaactaggatacacatatttgatatttaacctgtgaacttgtgttgtacaggtcaacaaaagaagatcaggcagtctcattccgcactgcaactgcaaaggtggatttccttttaatttataaaagaattggtgtttgcttcttctattatcgaccatgtaatggacactaaaagcaattattggttcattgcagtctgtctataaatggatcataaagccacaaagcatcataaagtagaatgaaatgtttcttcctggtcggatggcatttatttacaacatggtacctccttcaaagttccccattttagtgctttctgtatgttaattacttttatttttgtggtggtggtgaccattttccttaataaaatgatatgtatattattttattttcatcactcatcagaattcatccgtactaaacatgatgctactattttgtaaaaaaacgttattgttatttcaatttctaatttgtcaactctatgctatgttatcagctaatttgtcaatttctactattttatcagcttttataatatgcgtgatgcatgcctatgtttcatgatatattattgtctgtttctctgctcatcatctggagtacagtaatcaacatgctcaagctctcaattaacttcgcaatatgcaaacaagagaagaaagagaggaaggatgaaaaaaactcttccaatattatattaatagactatatagtattgctgttacatgcttacatatctgcaatgatttttatgttgtgcacatttaaattgtgattgtgatgcatcacagcttcaatgattactatatgcagaaccttcattatgaccacaatccaacttacatgtctgaattcatcactagatcatatttttgatgctaatggtttcatttgctggattcacccttccaaatgattttctgagagtaagagtaatggtgtttcatcacctattctcatcatctcgtagcatgtccagtactattgattgatgctatttgcaaataattttttccatcattcctgctttgatttgaactatgggttttagcggaagagtaattaatttcattaatgaaaccaggaggatggacttaccaatgatatcccaacaactcttcacaggagcaaagctgattgcgctgttccagaggtattatggcaatacatcatataccacattgaagtttcccgaaacttatcattttcctcagtattcttcttgcttctgcaggagatggtaactgtcagtgtggatggttctgtacttgataggattgctaaaatcatgtcataccttcgacttggatcatctgggaaagtcttgaagaaaaagaaaaaggagagggacacaaaaggtatgttacttgaaaattgaaatggattttgtgcagtggaagttgactgaaaaactaagtgacatcaggaaaatataaaatgatttgtttggaagctgagcacttacattgtgaaaaaatagaaaagtattatttggtactttttgccacaatggttgagtcttgttacaattgatttatagtcttctgtcaataatttaagtttgggtatttaagttatgaccatatgttacacgtttactttagattctgaacggattaattagttcacttaatgtatttgcatgtatgtactctctcatccatatctgcacttgctttgctcgatgaaattagattatcctgattcttgttatgcttgttatattgcagggaataacagtttagcaagtggtgactatgatgaggtagccagacctggccaaacaggttcttctctgaaacatcaatttcaaaaggacatgccgccgccgccaccccctcgaaataataacttaagcaagaatgaggaacagtctattcctgttgctagagcagatgaagatgacatttttgttggagatggagttgactattctgttcctaacaaggaaatgagccatagccctgtctctgaagatatggatgagtccccacataaccatcaaaagcagtcctatttcactgaagagaaacctgtctatgggcccatcccaccatcggaccctgctcaagcttggccacaaacggtaatccagctagtgtttagtaactccggttccattgtgcttaaagtaaaatttgagctatgcatgtccaatgttcaagacaaactaaattttttttttgcccatagttgtaccttctactgaaatagccattaattattagtatgttctattcttgacctgtatttcctaaaagttaatgcctcttatgatttcagaatggatacgatgctattcaagctcaaatggtagctgctggatatcaaggggagtggtcaggctatcagtatggtgaacaacagatgccttatccagaacagtacatgcaacaaagcactcaggactatgatgtattagctgatccaaatatagcccaggatccaaggttgatgactcaagcagataaagatagaggtcttggttctgttttcaaacgtgatgatgaaaggcttaagcagctgagggaaaaagattcacgggagaaagatcctaattttatctcagatagttactccgagtgttatcctggttatcaggagtataatcatgagattgcaggcagcgatgaagaagatgatttgtcgaagatggacatgggtggccgggtaagtgagagtactgtattctgaatgctttttttttcctgtttcccttcacaatagcagacataacttgcttttgcggaattcttgagctcatgtttactgtactttttaaaaaatattttaccatctatttccaaattcgttataatatatttttcttttatgtaagaaggtagagccagctctacctcatagccatttcattgatagaaatgaacggttacagagttgcctgaagaaaggtgaagcaggaaaaaaagaaaaaaaagggaaaggagatagaaggaggaaaatatacaaaaaattacaagaagctaaaattacattaacctcatctgattgtctcagaccagagattgatttttgctctggtgttgggattggcccggttactccatagttctagagcatcgatgatttgttgaattatgtctgaaataccagtttgccatctttaaaaaatcctgctgtttcttgatttccaaagtgtgtgcataggctgcaaaccaagtgggttctatgccctgattgttatgatagctgacagtaactttctccaagaaatttggggctgactctgccaaattacatagatgtaaaagtccaaatttctcctataagcttgtagctgccttgcatctcttaggatgatatggtccttgattgactctgccaaattcattctaatgtatgatactatgattcctttgcaggctaaggggcgtcttcataggtgggactttgagacggaagaggagtgggccaaatacaacgaccagaaggaagcgatgccgaaagctgcattccagtttggagtgaagatgcaggatggcaggaagacgaggaagcagaacaaggaccagaagctcacgaatgacctacacaagattaacaagatacttgcgaggaagaaaggtgacaaagatggaggggatgatggtgggcattatgatgatgatctacctagtggcaagaagcagcgcgcctga</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0143400, RefSeq:Os12g0143400