Os12g0158800

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Revision as of 10:22, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0158800| Description = Similar to E2F homolog (Fragment)| Version = NM_001072738.1 GI:115487437 GeneID:4351555| Length = 5324 bp| Definiti...")
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Gene Name

Os12g0158800

Description

Similar to E2F homolog (Fragment)

Version

NM_001072738.1 GI:115487437 GeneID:4351555

Length

5324 bp

Definition

Oryza sativa Japonica Group Os12g0158800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:2938791..2944114

Sequence Coding Region

2939384..2939505,2939629..2939695,2940324..2940543,2940655..2940731,2940813..2940878
,2940970..2941018,2941131..2941181,2941262..2941314,2941432..2941486
,2941563..2941651,2941742..2941827,2941933..2941989,2942086..2942275
,2943847..2944005

Expression

GEO Profiles:Os12g0158800

Genome Context

<gbrowseImage1> name=NC_008405:2938791..2944114 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:2938791..2944114 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggccgccggcgccggctccagcgaggtcgccgcgcgggtgctgctccagcgctaccagccgttcgcgccgccgccgggcgagtaccaccagttcggctccggtggcgccgccgccgccggggacatgacggaggccgtgctcatccggacgccattaaagcggaaacatgacagagaagagaatgaagctgctgaatcaaatgactggatgatgagccctggatacactaatccagcaggcagcccagttccaacaccgctttcaggaaaaggttcaaaagcttttgccaaatcaaaagctgcaaaaggccagaaatcttgtccccagacccctttgtgcgctagttctccaggcaatccggttacacctgttggtggctgccgatatgatagctccctagggctattgacaaaaaagttcctaaacttgctaaagggtgcacctggcggcatagttgatttgaataatgccgcagaaacactggaggtacaaaaaaggcgtatatatgacatcactaatgtccttgaagggatagggctgatagaaaagaagctcaagaacaatatccgttggaaaggaattgatgactcccgaccaggagaagttagtgatgatatgtccatcttacaggctgatattgaagccctctcactgcaggagcacagcgtagatcaacaaataagtgaaatgcgagataagttaagaggactcacagaagatgaaaataaccaaaagtggctatatgttactgaagatgacatcaagtctttgccctgcttccagaatcagacactgatcgcaatcaaagcgcctcatggtacaactttggaggtcccagatcctgatgaagtgaatgattatccacagaggagatataggattgttctaaggagtactatgggtccaatagatgtctacctagttagtcaatttgaggagatgagtggcatggagactcctccaaggactgtgcagccagtaagcatggattctctagagaatcccaggacgccattggctgcagaacccaacaaagctgcagagtcacagccaaatattcaagatgggctgctaatgccttctgatgctccttctagttcacaggatattggcgggatgatgaagattgtcccttcagaacttgataccgatgcagactactggctcttatcagatgccggggttagcattaccgacatgtggaagacagcaccagaggtggagtgggaaggaatcgagaaattcaatgcagaggacttcctggaggttagcacgcctcggcagcaggataaaccatcctctgacattatggatggagactcctgcataagctga</cdnaseq>

Protein Sequence

<aaseq>MAAAGAGSSEVAARVLLQRYQPFAPPPGEYHQFGSGGAAAAGDM TEAVLIRTPLKRKHDREENEAAESNDWMMSPGYTNPAGSPVPTPLSGKGSKAFAKSKA AKGQKSCPQTPLCASSPGNPVTPVGGCRYDSSLGLLTKKFLNLLKGAPGGIVDLNNAA ETLEVQKRRIYDITNVLEGIGLIEKKLKNNIRWKGIDDSRPGEVSDDMSILQADIEAL SLQEHSVDQQISEMRDKLRGLTEDENNQKWLYVTEDDIKSLPCFQNQTLIAIKAPHGT TLEVPDPDEVNDYPQRRYRIVLRSTMGPIDVYLVSQFEEMSGMETPPRTVQPVSMDSL ENPRTPLAAEPNKAAESQPNIQDGLLMPSDAPSSSQDIGGMMKIVPSELDTDADYWLL SDAGVSITDMWKTAPEVEWEGIEKFNAEDFLEVSTPRQQDKPSSDIMDGDSCIS</aaseq>

Gene Sequence

<dnaseqindica>4610..4731#4420..4486#3572..3791#3384..3460#3237..3302#3097..3145#2934..2984#2801..2853#2629..2683#2464..2552#2288..2373#2126..2182#1840..2029#110..268#acttttccctcgtttttcccccctcttctgccgccaaaaaattcctcagatccaaaccctagcgctcgccgcgccgcgccgcgatcctccccctcccgatcccccccccatggcggccgccggcgccggctccagcgaggtcgccgcgcgggtgctgctccagcgctaccagccgttcgcgccgccgccgggcgagtaccaccagttcggctccggtggcgccgccgccgccggggacatgacggaggccgtgctcatccggacgccagtgagtccctcccgggggggttgacactgtggaaaaccttgtttactactcgtttcagttgttcgatttggacgaacgctcgcggggtgtggtcccccacccgtctcgccggcggcgaggagaggcgtgagtttgtctgcgctgccgtggcggtagctgggatgtagtagcaatgctgcagaggtgacggggtagatttggttgggcgagcgagctgggtggatggatggggtatgggtggtttcttgctgcggcggagggaaaaaaattttggttgaattttgcccgcctccgtgggttgccgcgtaattctgcagagagatttgataattcttctgtgtttctgatgttcccggatggggttggtcagatggggacgcttcgctgaggtttttgttgaatctgttgctaggtaggttggaataattccgtggaactcgttaacaccgttcttataaaattggatttcacttattactcattgaagggctgctttggggaagatgagggttttttcgtagttaagtgatgccgcgcaaagctgaactagtttgatagtccacggcgaatggtctggtgattcttgtactcatggattgatgtagtgtgagccattttggaaggcccttgttggtccttcatgttaaactgaatgatttaatcaagcgctgcctaaattttacggtgaggaggggattcaataaccaccttacttccaaatgtgactgatatgttgttttctcgttcatctttaaaataggggaaatgggtacaagttctgaaggggaatttttgacattgttgcacttgtcatgtgggcatgtaggtaaatttcgctcatggaagcttataggaccatggatcagtatggtttcctatgtactgtcttataatagtgagacataatgctgctgaaattctgcgatagctgatagtcatgcttccatctcttgcagagggttaattaagcttaaaatgtaaaattactaaacactgtcctagcaaccaattctagctcatgcctgtatgttattcaagcgcttgtttgaaaacctcaagcgctccacaactttataaattttattgtgcctatgtcacaattttcaatctttggcttgctacctaatgcattgttagaagaagcatggaatttgaatttgtcagagtattgactccattgttttcaaccgataatctattataatttcttaattcaggaagcagttctcatattaattaactttaccaggatccattggtaacagttacccttctgaaaacttctgtttctgagttaaatttctttcatatggctctcttccccttagcttgaatcctcgtgaagtaatgcgtaaatgcaaataagacttctggcgtcagacgaatacagtttatggaatttgctattgtgattcttcttaggtattgcttttttttttgttgttgaacagaacacttcagacaaccttgtcctgtaacacgtacaacttatcgccttttgaaagtatactgagacatcttcctgcaatattttgcctgctcataatctgacaacaatattttgtttgtagttaaagcggaaacatgacagagaagagaatgaagctgctgaatcaaatgactggatgatgagccctggatacactaatccagcaggcagcccagttccaacaccgctttcaggaaaaggttcaaaagcttttgccaaatcaaaagctgcaaaaggccagaaatcttgtccccagacccctttgtgcgctagtgagtactgcacattcagtcaggagttagcatgagcccatgaatcatcgttatcacgggaaaagttactcatgttaaccccatcctctttgccaggttctccaggcaatccggttacacctgttggtggctgccgatatgatagctccctaggtaagaagagtaactcatattttaactgatgttctcgtttgggttttgaggtttgatcggtaggttctttacttatttatgccatttatcggtattgtctttcagggctattgacaaaaaagttcctaaacttgctaaagggtgcacctggcggcatagttgatttgaataatgccgcagaaacactggaggttaatatttccttctgtttttttctcatatcctgtttgctaacacgcctttattttgtcaagcttatatgtatgtaaaatgttttgcaggtacaaaaaaggcgtatatatgacatcactaatgtccttgaagggatagggctgatagaaaagaagctcaagaacaatatccgttggaagtaatatattctctttatatccatatctgtaaattgcattttatgggtatcacatgctttatgtctcctttttcagaggaattgatgactcccgaccaggagaagttagtgatgatatgtccatcttacaggtatcatgcttttgttatatcctattattgttactacaattattaaatattgcttctgattgaaaacatgttctggggaagcaggtgcttaactaatgatatatttgtcacccacaggctgatattgaagccctctcactgcaggagcacagcgtagatcaacaaataaggttgatgaacagttagttagagttcctggtgtgattctttgattctttcactaagcatgttgttcgaatgtttcttgcagtgaaatgcgagataagttaagaggactcacagaagatgaaaataaccaaaagtaattatctccttttttctctcaaaagtagctattagtacaacataattacctaagatgtgttgactacaatgtaagcttaagatctgtttttgcttctctcttcctacaggtggctatatgttactgaagatgacatcaagtctttgccctgcttccaggttgtctattttgaactctagtaattgttagatgatcctgttgttttttttatgagcaagtaaattaccaatactttactgtaatttgcagaatcagacactgatcgcaatcaaagcgcctcatggtacaactttggaggtcccagatcctgatgaagtgagttgtaacatgtattctgtgttcaggaccttgggtggatgttacattttgttaatggaggtgtattccttcgtgcaggtgaatgattatccacagaggagatataggattgttctaaggagtactatgggtccaatagatgtctacctagttaggtatatgcttatctacttgaactacttgtacatctatgttatgatcatagcttcacaatgtagagctctaacttagcatgaaggctaatgccattatttatttatttttagtcaatttgaggagatgagtggcatggagactcctccaaggactgtgcagccagtaagcatggattctctagagaatcccaggacgccattggctgcagaacccaacaaagctgcagagtcacagccaaatattcaagatgggctgctaatgccttctgatgctccttctagttcacaggatattggcgggatgatgaagattgtcccttcagaacttgatgtaagttttacttgcgtaactgttggcatgatatttcaacctgaattgatctgtctaggattctgtttttttttgtgctcttctttcactttattgctgaacttaagtacctcttactttgtgcctcagtttacctgatgtgtttctctcattatgcacgtagaaccacttcgcagcaacttcactatgccactttcatttttaaggctcactatatcactttctatttccgtcttgtcttctctgtgcactctatagcatttcccacttctaccatctgttcattgataatttgacctgcaaagaatctgatcttgttactgatcgatcatcacatagatgaattgcagtctccattttccctttaggaagaaaataacagtttaatgaatatttactttttatgctacctcgtagagagagtaccaagctatggacagtattagaaaaacattatgctcaaaagaattccaataaaaatggaagtaaactaaagaatcctttcttatttttccaggacataccttttaggcctttgtattgcatttgtgttcctttaaaatttatatagctgtttactccctggtacaagttcttaattatgtgacaacccatttttgatttgcagaccgatgcagactactggctcttatcagatgccggggttagcattaccgacatgtggaagacagcacgtatcctttttcaaacagtctatcactcatgcattttgccattttggttatcctctataataatgtagcatatcataccttattttgatgtgaaatcgctaaaaccctaactcgagaacacagcagaggtggagtgggaaggaatcgagaaattcaatgcagaggacttcctggaggttagcacgcctcggcagcaggataaaccatcctctgacattatggatggagactcctgcataagctgaaaacctggaaacagtggaagtaccatccaaatacctgggaaatgtctgtttcttggcatgggctactggtgaccacgtgaaaaccgtagaagagaggttcagggaatggctgtaagcctgtgatgatgtacagatggcaaactgacagcttcctggatcaagaaggcatcacaacgtcctgatcattcaggtcttgactggcaagatgaacgaatcctaaagctgaatttgtggttcctgtgagttgtatgttgtatctcacaacaaaaaggagcgtacagctaggtttaagctagacagtgctgcaagctccgggactaaaattattcaggattcaggaagcgctgtaaaacttgaagctgactctgttgtactataaatttttcgtattcttgatggtatctattaaaaatcactgcatcactggtgccatcctgaaatggactgatgcagtgaagtagtaggtagctttacatatgacaacttgacaagtctgttttcagtgtcttgctggatcagccttccattggccattgctgggcaatcacctgtaacatttcgttctctttcattttcgaagggtcttgtgatgt</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0158800, RefSeq:Os12g0158800