Os12g0163200

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Revision as of 10:22, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0163200| Description = Protein of unknown function UPF0120 family protein| Version = NM_001072760.1 GI:115487481 GeneID:4351580| Length = 6...")
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Gene Name

Os12g0163200

Description

Protein of unknown function UPF0120 family protein

Version

NM_001072760.1 GI:115487481 GeneID:4351580

Length

6142 bp

Definition

Oryza sativa Japonica Group Os12g0163200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:3200683..3206824

Sequence Coding Region

3200788..3200899,3201017..3201092,3201443..3201545,3202110..3202161,3202240..3202334
,3202704..3202769,3202911..3203420,3204023..3204322,3204868..3205194
,3205549..3205755,3205979..3206077,3206194..3206252,3206330..3206333

Expression

GEO Profiles:Os12g0163200

Genome Context

<gbrowseImage1> name=NC_008405:3200683..3206824 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:3200683..3206824 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgaagaagctcgggaagaaggcgcgcaagttcgcgcgcaagcacctccagtccgccgccaagcgtaaccgcaagcagcgctcgcagttcgcccgccgccctcgcagaggtgggagcggtcgcgggaacgagcgcgatggcgatggcgatgacgagatgccgcagcgagcaatcgataacgtcatgaacaacggtgatgctgcagctttggttaatggcctagagttcccggaagatgaatgtgaattaaacagtgatctgtctgatagtgatggttatctttcagaggactctgaatgtctatattattctgacagtgaggatggcaatgctgtcaatgattgttttgtccaagatggtttagatggcgagaatgataagatgaatacagagataaaaaaacaaaagaagaagttgaacaagttgatggacaaggaccctgagtttgtaaactaccttgaaaaatggcaatcagagttgaagagtgatggaagtaaagaggattctgatgaagatgagatggactctgtggataatgatgctgactccagtgatgaaaatctttcaaatgataagatactgacaaggaagactataagtgaatggtgccagttagttgcaaaggaacctaaagcaccttctctacgcagcctattaaatgcttaccgggatgcttgtcgatttggtgtttccaagagcccttctgtgcagagaattcaaagtactgaagtgtttcatcagataataacatttgtcctttccgaagcagacaacattttccatgctctcttagaaatttcggatgatgtaaacaaagggaaaattatgaatctgagaagtgcaaagaaatggaaaactattgaaccactcgtaaagtcttacttgcagaattctcttgatctgcttagtcaacttactgacaaccaaatacttgcatttgtcttgactcgactgagagcatccgcagttcttttttctgcatatccatcaacatcaaggaggctcctcaagatcttaattcgtttgtgggccagtggagatcataacttgtctctgtcctcatttcttatgatacgggaagtggcttcgctgttaccagaatgtttggatctctgcttaaataaatcttataatacataccttgctagttccaagcttgtgaatgaaggaaatataaagcacattgattttttaatggactgtctagtggagctctattctcttgatgttcagaaatcatgtgagagggcaactacctctataggacaactgaattctattctcaggcaggcttgtaaaacaaaagaaaaggaagacctcaggaaggtagataactggcaatatattaactgtgtaaacctatgggttaggtttctttgttgtaactacaaggactacaatatgcatccattactttcttcagttgttcaaataataagaggagtggctcacttattcccaggcacacgttacttaccattgagactgaggcttgtgcagatgctgaatgagctttctagttgcagtcagatgttctttccaattccatctttgttatttgattgcctagaatttagagatacctctcagaaagaacaaggaaaaaaagcaaaggtcaacttttcatcactattgaaggtgccaaagaatatgctgaagtcaagagacttccacgaggagtgcattctttcagctattgatgttctgtctgcacattttgcccaatggtgctatcatgtctcttttccagaagtagccaccattccactgatcctcctgaaaagattacatgagcagacaacaattgaatcacttcgtcgtcctattaaacgactgatagaccaggtagacgagaacaagaacattgtagaaaggaagagagacggggtctcattttcacctaatgatacaacatcagttgagagcttcgttcaggaccttcaggcagagaagagcggtgcaaaaatttcacagttttacaaaattgtaccaaaaaaactaaggtag</cdnaseq>

Protein Sequence

<aaseq>MAKKLGKKARKFARKHLQSAAKRNRKQRSQFARRPRRGGSGRGN ERDGDGDDEMPQRAIDNVMNNGDAAALVNGLEFPEDECELNSDLSDSDGYLSEDSECL YYSDSEDGNAVNDCFVQDGLDGENDKMNTEIKKQKKKLNKLMDKDPEFVNYLEKWQSE LKSDGSKEDSDEDEMDSVDNDADSSDENLSNDKILTRKTISEWCQLVAKEPKAPSLRS LLNAYRDACRFGVSKSPSVQRIQSTEVFHQIITFVLSEADNIFHALLEISDDVNKGKI MNLRSAKKWKTIEPLVKSYLQNSLDLLSQLTDNQILAFVLTRLRASAVLFSAYPSTSR RLLKILIRLWASGDHNLSLSSFLMIREVASLLPECLDLCLNKSYNTYLASSKLVNEGN IKHIDFLMDCLVELYSLDVQKSCERATTSIGQLNSILRQACKTKEKEDLRKVDNWQYI NCVNLWVRFLCCNYKDYNMHPLLSSVVQIIRGVAHLFPGTRYLPLRLRLVQMLNELSS CSQMFFPIPSLLFDCLEFRDTSQKEQGKKAKVNFSSLLKVPKNMLKSRDFHEECILSA IDVLSAHFAQWCYHVSFPEVATIPLILLKRLHEQTTIESLRRPIKRLIDQVDENKNIV ERKRDGVSFSPNDTTSVESFVQDLQAEKSGAKISQFYKIVPKKLR</aaseq>

Gene Sequence

<dnaseqindica>106..217#335..410#761..863#1428..1479#1558..1652#2022..2087#2229..2738#3341..3640#4186..4512#4867..5073#5297..5395#5512..5570#5648..5651#ggcgctaccgtcttctcgaggaggaagaagaagaagaagaagaagaagagagagagagaggagaacacctgaaaccctaaccctagcgaggcaagaggggaggggatggcgaagaagctcgggaagaaggcgcgcaagttcgcgcgcaagcacctccagtccgccgccaagcgtaaccgcaagcagcgctcgcagttcgcccgccgccctcgcagaggttcgtgctcccccgtcgtctcctgctcctccctcttctccgggtggtttggttccgtacggctccagtccacgggggctcttctgttggtagctcatatgctcttcttttcctcaggtgggagcggtcgcgggaacgagcgcgatggcgatggcgatgacgagatgccgcagcgagcaatcgataacgtcatgtaatcatctttcacctctccttacggttttgtttattttggtaggcttatcaggatgctttccaacatacaatagggtgaaaactagaaggggagggtgcaatgctttgctaggttcacacatttgatagtgtcggtttgtttttttggatggaattgatctggtctgaattgtactagatattgagactgaccagaactttgcttgcaactcaaatgatgcaatagactaacctcaattcaacttcataactttacaacttcattaatcatgataatactgcacaatagttcatttagtgtttcttttatttaatttactaaataaattcgaaattcttttcctctaggaacaacggtgatgctgcagctttggttaatggcctagagttcccggaagatgaatgtgaattaaacagtgatctgtctgatagtgatggttatctttcagaggtatgtctgcttatccttttcagaggatcttattcattgatccacaaccagcattcattccatcataaagaatcatgctttttttttaaaaaatgttcacaactgtccatatttacagtattgtgatgccttccatgtattgtgctcaagcatataacaaatttgtatttgtccaagcttgagcttggtccacatatatcaagcctttttcttaattccatcctattgacaagggcataggcattattcctttttattcttgttgataaactttcttcacaaatctgcttatttctgtgcaaaatccaagtaggagactgtagtatctgttggcaagagatgaacagttttttggtatgttagtacattatatatcaagtatgatggttggctatcattagctcatcactatagcagccgtagtcaccatggctcagttcttgccaatagtgtgtcatcaaggctcccaaaacctctatagcatgctttggataagtttgctgtttccaaccagtgacattatctattgtctgttatattgcccctgaattgctcgttgtgcaggactctgaatgtctatattattctgacagtgaggatggcaatgctgtcaatggttagtgtttgatgatgcaaaacttaattcagttttatgctgctctagtatatccaattatctcaatattttgtgcagattgttttgtccaagatggtttagatggcgagaatgataagatgaatacagagataaaaaaacaaaagaagaagttgaacaagttgatggacaaggtgaaaattgcctctctagatttggccatgcgtgcttactagtatatatatttgttatttaccacaattttaggtttatctgccttttgacatcttgcacttggttgctgatttacagttctatagttgtgtgtgcatcactttattcttattgaatgtaaacacagcaatgttttattctgaattacattggttatacatccagttatgtagctcaagtactagacattcatttgattgatcacgtcctccatgagcagatgatgtgttcgtgcttttaatagtcgcattttctggaattttagggccttactgtatatttctttgggtattttgtgttcagattgtcagaattaattttgtttgtaggaccctgagtttgtaaactaccttgaaaaatggcaatcagagttgaagagtgatggaagtaaagaggtaagattgtctaattggttgttcgtgcctgagccgctgcaattcagattacacctttttttatatataatttactttccatgtgaacaaatcttgccaaataaaatttgttttttatgcttcattttcaaacttcaataggattctgatgaagatgagatggactctgtggataatgatgctgactccagtgatgaaaatctttcaaatgataagatactgacaaggaagactataagtgaatggtgccagttagttgcaaaggaacctaaagcaccttctctacgcagcctattaaatgcttaccgggatgcttgtcgatttggtgtttccaagagcccttctgtgcagagaattcaaagtactgaagtgtttcatcagataataacatttgtcctttccgaagcagacaacattttccatgctctcttagaaatttcggatgatgtaaacaaagggaaaattatgaatctgagaagtgcaaagaaatggaaaactattgaaccactcgtaaagtcttacttgcagaattctcttgatctgcttagtcaacttactgacaaccaaatacttgcatttgtcttgactcgactgagagcatccgcagttcttttttctgcatatccatcaacatcaaggaggctcctcaaggtatttctgtctgttggtgatgctgcttgttaatacttaacttgattttgtgtgttctcttgtacccaagggtattcatgtttgaaagctattctagtcaactataccttatcttttggtgaaaattaaatttgttctctttacattgtaaccatttgagaaatatctgctattccagcacttgtttgactgctatgctgtagagatgaggagaaatgatggttctattcgctggtgccttgttatatggacattgtgtttgtatgatagctgcatgcttttacttaactcatttaagccatctatatctgttaatgcttttgccagcttcaaaacagtatgctgttccaaaaatctagtgtaattgaccattaatgcttcttccatagctcctttttaaccattttaggtccagtacacttcctattggtcctgatgtgtcagaattgttgcggtatcagtatcttatattgtgctgacatacatttgttgttcagttaccctatgactatctgaaaataggttctataatatatctgctgtgtcaaattcttttcttattagttgacattagctcatggtatattgttaaaactttgcagatcttaattcgtttgtgggccagtggagatcataacttgtctctgtcctcatttcttatgatacgggaagtggcttcgctgttaccagaatgtttggatctctgcttaaataaatcttataatacataccttgctagttccaagcttgtgaatgaaggaaatataaagcacattgattttttaatggactgtctagtggagctctattctcttgatgttcagaaatcatgtgagagggcaactacctctataggacaactgaattctattctcaggcaggcttgtaaaacaaaagaaaaggtatatactgctgcttaattctagtgttgtgtttgcacttctattgtatcctacctagaaaatcctcaggtctctttttatttgttggtctggatccaggcctgaaaatggtacctaaacaccagtttcattaaaatgcccttcattcaaacattctggtttgtatatttttttccctgtctgaagactgaagtgagtaaagtcaaaggaaatcctgaggcatatatgttatgttgttgattagttccttcttgcactgtgaacgttgaattcacaaagtgcagtcaatcagttatcaccacatcttttttacaatttagaatttatgacatgccaattacattttcttgctaggttgctatgaatagaaaagttctttctgtacagtcatacaagaaaaaacttcttgctgatatacatgcccttttcacatctttaaaagaaaaggataggatatctgctcttgtacattaaacgccttgctttcttttttgctttgttggcaccacatggatatttacatgcaatctcgactgttgttgcaggaagacctcaggaaggtagataactggcaatatattaactgtgtaaacctatgggttaggtttctttgttgtaactacaaggactacaatatgcatccattactttcttcagttgttcaaataataagaggagtggctcacttattcccaggcacacgttacttaccattgagactgaggcttgtgcagatgctgaatgagctttctagttgcagtcagatgttctttccaattccatctttgttatttgattgcctagaatttagagatacctctcagaaagaacaaggaaaaaaagcaaaggtcaacttttcatcactattgaaggtatgccactttactgggcacattttgcgatgataatgtgtggatgttatgtgatctttcatgcctttctaaagccactaaaatgactcgttatcattctaccaggccacttgccttaactcagtaagataaacttattataagactagtgtcattagtggcccttttagcattcaagaatgatctttttcaatgcatgggtaacctgtaaactcacccttttcttagttatatttcttgattggttcttttaacttgctttacaataatacagttttttttaagttctgtatttttatcatttgattcatcacctgaaaatggttttgattaactgttgtttgctttgtttaggtgccaaagaatatgctgaagtcaagagacttccacgaggagtgcattctttcagctattgatgttctgtctgcacattttgcccaatggtgctatcatgtctcttttccagaagtagccaccattccactgatcctcctgaaaagattacatgagcagacaacaattgaatcacttcgtcgtcctattaaacgactgatagaccaggtgaatatacatatgttccacatgtcaccatccctgtaatatttgtgtgacagtgtaatgttactcatagatgcattactgtgaatagatttagtttaagctcgcttcatttcttttgtgaatggggccaaaacgcattatctatttgactattttttgcatcttaattcactgttgcttttgagtttaatatgttagcttcattttaatacttcaatgacaggtagacgagaacaagaacattgtagaaaggaagagagacggggtctcattttcacctaatgatacaacatcagttgagagcttcgttcaggaccttcaggtttgatttcctccctgtaatgatttttttgtgcaatcacctgttatgcctgcatagttgcatatactcgattcttcttcctggggtttgctgaaaaactcttgtcttgaatacaggcagagaagagcggtgcaaaaatttcacagttttacaaaattgtaccaaaaaaactaaggtaaggacaatgtttgatgttgattgacgaagtcattatcagtggtctgtatccaaacatcccccggctgtttgcaggtagaaaaagaagtgctatgaaatgcgaacacacttttttggctaccggattatcggaagaaggatgctgggagcatgaatgtcgcacgccatatcggtcaactcatttttctctgggagatatttatgaatctgagttgatcacctcttatgacatcaacaatggcattgctcgagttgttgaaaccggtgaagtgaatgagcctcttgctgagcaaagttttgagcgtgaatgttaccgtttattgatgcattgggcaatgagcctcttgcttagcaaagttttgagcgtgaatgttactatttgttgatgcattactgtggaggttgagactgttcttcctgacgaaaggattttgtgatctacttttgcacatgacttatgatttgccagacaattattcgattagcatttcactgtttccttaggcagatcgattaggatattgaaatcatattattgtctatttgaagggactggctgtaatccctact</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0163200, RefSeq:Os12g0163200