Os12g0170700

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Revision as of 10:23, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0170700| Description = Conserved hypothetical protein| Version = NM_001072805.1 GI:115487571 GeneID:4351627| Length = 5230 bp| Definition ...")
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Gene Name

Os12g0170700

Description

Conserved hypothetical protein

Version

NM_001072805.1 GI:115487571 GeneID:4351627

Length

5230 bp

Definition

Oryza sativa Japonica Group Os12g0170700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:3591291..3596520

Sequence Coding Region

3591291..3591384,3591476..3591528,3592872..3593048,3593135..3593172,3593403..3593490
,3593835..3594014,3594106..3594214,3594379..3594448,3594525..3594672
,3595074..3595202,3595297..3595422,3595601..3595663,3595957..3596202

Expression

GEO Profiles:Os12g0170700

Genome Context

<gbrowseImage1> name=NC_008405:3591291..3596520 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:3591291..3596520 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcactttatgttgcttcccattacaaaaattcacccaatgacttgcaactaatggctgatgcgccggctcatcacctatttgtattgcttggcccagtcgatgagtctaaaaatcagctcccggatattctatgtgtagtccaggtctgtttggaaggtcaaatatctcgaaaatcagctatgaaaagcctaagtgagggtcggtcaccttctggtgatcaaataccatggaaattttgtgaacagtttcaagacaacgtgtttccaagtctctcaggagctcggattgtacgaattgctgtccatccaagtgctgtgaggcttggatatggttcagctgctgtggaccttttgacaaggtactatgaagggcaaatgactctatttgctgaggatgaggaggaaaatgaagagcctgaagtcaggatcactgaggctgcagagaaggcttctctactagaagagaccgtaaagcctagggcaaatctcccaccactccttgtccatcttcgcgaacgtcgtcctgaaaagctccattatcttggtgtatcttttggacttacacaagagcttttccgtttttggcggaagcacaacttctatccattctatgtgggccaaattcctagtgctgtgactggtgagcatacttgtatggtcttgaggcccttaaatagcgatgacattgaagttaatgagtcaagcaaatgtggatttttggatccattttatcaagatttcagacaaagattcaggcgtctcttaggaacatctttccggcatctcaattttaagcttgcaatgagtgtattggcttccaagattgatttttcagatcacgaaccctcagactattataccaatattacctcaaagatattgggagatatgctatcaccacatgatatgaagcggctggaagcatattctaacaatttggtcgattatcatctgattctggaccttgtccctattcttgcacaccagtatttttcagagaagcttcctgttacactacatggtgcccaagcagctgttttgttctgtatgggactacaagacaaagacataggtgctacaaaggaagaactggggatagagagggaacaggttctatcaaacttcatcaagacaatgaagaagttatacggttaccttcataatattgcaggaaaagaaattgaagcaacattaccacgactaaaggaaattgatacagctcctcttaaatcattggatgaggaccttgatgaagcagccagggaagtaaaggaacaaagaagagcaatagatgaggatgatgtggacccaaagtttctgcaaaagtatgcaattgatgccgatgacgatgagattgagaaggcgctgaacggaggaaagatttccgcaagcggtgttatcagtgtgaaatccaacaagacaaaggctgacaagcaagagaagcgcaaagaaatgaagaaatcaaaaaggaaaggaaatgatggagagaaatctgagtctaagaagaagaggtcttga</cdnaseq>

Protein Sequence

<aaseq>MALYVASHYKNSPNDLQLMADAPAHHLFVLLGPVDESKNQLPDI LCVVQVCLEGQISRKSAMKSLSEGRSPSGDQIPWKFCEQFQDNVFPSLSGARIVRIAV HPSAVRLGYGSAAVDLLTRYYEGQMTLFAEDEEENEEPEVRITEAAEKASLLEETVKP RANLPPLLVHLRERRPEKLHYLGVSFGLTQELFRFWRKHNFYPFYVGQIPSAVTGEHT CMVLRPLNSDDIEVNESSKCGFLDPFYQDFRQRFRRLLGTSFRHLNFKLAMSVLASKI DFSDHEPSDYYTNITSKILGDMLSPHDMKRLEAYSNNLVDYHLILDLVPILAHQYFSE KLPVTLHGAQAAVLFCMGLQDKDIGATKEELGIEREQVLSNFIKTMKKLYGYLHNIAG KEIEATLPRLKEIDTAPLKSLDEDLDEAAREVKEQRRAIDEDDVDPKFLQKYAIDADD DEIEKALNGGKISASGVISVKSNKTKADKQEKRKEMKKSKRKGNDGEKSESKKKRS</aaseq>

Gene Sequence

<dnaseqindica>1..94#186..238#1582..1758#1845..1882#2113..2200#2545..2724#2816..2924#3089..3158#3235..3382#3784..3912#4007..4132#4311..4373#4667..4912#atggcactttatgttgcttcccattacaaaaattcacccaatgacttgcaactaatggctgatgcgccggctcatcacctatttgtattgcttggtagggactaattgcccagcattcccaactgttcaccatggcaacactgtcaggctgtactaagtactaacttatgttctttattttctaggcccagtcgatgagtctaaaaatcagctcccggatattctatgtgtagtccaggttctaaactgcttcctgcttgatcttcttagtattttattttgaaattttctcttaatgatggccatatgctgattctttgcttgcacagtagccaaaagtgtgaaatatatgattctctaattgcggtgtagccgaacaacattaaagtttcttacataattgtagaaatgcatcctaatgccatgcaccagtaacaaaaattacatacatcttaatttgctattgtactattcagcgtttatcaatctatttgatgttgttgagtcaatttgccataggaatcaccatatctgcccatactgttataaaaaagggaagttcagtttgatggtactcccatcattcagaaatagatgtcatcttaggatccatgcagtcaaacctagtaatcttaactcactaatatacacaaaaaacattaaggtttcatatgtaaataagatattagcatttttttaatgaaatattattctgtagttatattttcaatatgtttttatggatatatcattagaaaaggcaaaataaatgatatgcattggaccatgccaatgccctaaatgacaagtaaaaaagaatggagtgagtatgttctgcacctgctcccgcttgaaatgatctcatgtggtcgtctgtatacttattttaatttaagggatttttttgcatttttatttttttatctcatcatatatgtatttgtcatctgcggcaacactccggtgctatgctattttggaaaacatccaacttcagtttttagttgacaatgtaaagacactgcaatgtttcatagcttactgtttactttcaattgtgaaccttttagtgagttttgcattgtttattttttacctcatcagaatgtgctcaagcttcatgtgttggccctggtgtaataactcattatatgtgcacaccacattatgcaaatctggttcaactttttaacgactgatctgtagggctcaggctttatgttttttaaaagttcttttaatttaaaactaattcccattccctacaaaaaaaatctattacttcatatctttagcttcaactcattgttcttactatgcattgtttgctgaatacatttttagctttgctggaagctgaacctttccttgattgaactaatttattcacgtggttgttaaattcagtacttaactcttgttaaaatttaacttctccacttcacttccactgatgcccatcttcagatgatatgaacaatctagactgaaaatttaaagggtagttcctactgaatacaaccgccacaacatttcaagatgttgacctttcttgtaaatatacttgtttgtgatcttcaggtctgtttggaaggtcaaatatctcgaaaatcagctatgaaaagcctaagtgagggtcggtcaccttctggtgatcaaataccatggaaattttgtgaacagtttcaagacaacgtgtttccaagtctctcaggagctcggattgtacgaattgctgtccatccaagtgctgtgagggtgaggtttattgcctttatagaactctgttatgcacgtgttaacatcactctccacactctaaatattctcctttgtcaatgcagcttggatatggttcagctgctgtggaccttttgacaaggtatgcatttctcttctttaccccaactaggggttatgggtgctgtggattgtagtatctgttgatgctcttctgttttttttttggctgaaactggtatttgatgattaatgatggtagatatagggaacggacttgtctaatcttactggcaatttaattagtaattttttcacaaggatttgtttacccatactcaattactgacatttatttatttggtttgaaaggtactatgaagggcaaatgactctatttgctgaggatgaggaggaaaatgaagagcctgaagtcaggatcactgaggctgcagagaaggttcatttgaacaactatttattatgcccatttgatatcttattgtgcaacagtttgaaatagctctacaattagaactatattgtatggttttcatactacatattttaatgtatgaacagttttaaatttgcaaactttgaacaaaataagcatggtgtaatatttttagatagtagttcttttttatttctgcacatagcacagcagcttttattatgtacattgtgatgcaagcctctgtttgcctaccatattatttgaattaatatattgtgaccaaacaatattattttgcttgaccacaagtctctaccttacagttttgtatattactattgcaggcttctctactagaagagaccgtaaagcctagggcaaatctcccaccactccttgtccatcttcgcgaacgtcgtcctgaaaagctccattatcttggtgtatcttttggacttacacaagagcttttccgtttttggcggaagcacaacttctatccattctatgtgggccaaattcctgtaatgatctaatctgatctatttgttgttcttcacctctgcagttcttcttttgtagtagcttcttatgtttcctccatctattcttcagagtgctgtgactggtgagcatacttgtatggtcttgaggcccttaaatagcgatgacattgaagttaatgagtcaagcaaatgtggatttttggatccattttatcaaggtacaaaatcatgagttctgtttcctcatctaatgcatttcaaactgaagctgcttgatttcttaactgtacacagcaaatctgacggaaggtttacggttcagattttgccttttgcttgatttttttggtgcattagctaaattttggaacaatgtgcccagatttcagacaaagattcaggcgtctcttaggaacatctttccggcatctcaattttaagcttgcaatgaggtatattgaagtttcaaattttttttcatgggaaagaaatttggtgatgttctaattattggctgtgtattcccagtgtattggcttccaagattgatttttcagatcacgaaccctcagactattataccaatattacctcaaagatattgggagatatgctatcaccacatgatatgaagcggctggaagcatattctaacaatttggtcgattatcatctggtaagaaatttatgaaggatctttagtttgattccacttgttcaaggcaaaatttctaggcccaggtttggtagggatgcaaattggggttctacattgttatagatcactcagcaactttcagatttctggaaatatttaatacctgcacagctactctgcaaatcactgcctccttatgattttattaccgttcacttctgcaaatgtagcttttgttgctatgatcagagaaggttatcttctctccttttcgtttattaaattccatctcatgaaagcattttctcaatcaggttagaagttcagatgttgtcatttgcctttatatgaatacaagttgtgttataaagctacattgaaacacttccaattttcacctttttctgttatttttgtagattctggaccttgtccctattcttgcacaccagtatttttcagagaagcttcctgttacactacatggtgcccaagcagctgttttgttctgtatgggactacaagacaaagacataggtgctacaaaggttagctcaagttgatcccaagcaaattcaaaatacttggaattaaaattcatcgagatggcatgtcttattcttttggtttttctgttgacaggaagaactggggatagagagggaacaggttctatcaaacttcatcaagacaatgaagaagttatacggttaccttcataatattgcaggaaaagaaattgaagcaacattaccacgactaaaggaagtaagcaaccatattttgtttccttttgtcaacttagtattgacacgtaatagttgcacttccagatttggcattgttcattggtgggcatggaagcaatgctcatggtgtagttagataaaattttgtgcatggccataatctcataatagctgctatgtctgactactacttccagattgatacagctcctcttaaatcattggatgaggaccttgatgaagcagccagggaagtaaaggtatgttttctttagagtttagatacagtaatgcgttgcatacttaaaatcctgagtcgtccactgaggagtaatgaggatgttgaaatattttatgagttcaagtgcagtttctgcacgattaaaatattaaaactggccatatgtctcgtacagaaaacacctaaattatttgagcaccattattagatgtggacaatatcgtgacacatttaaacacgaataaaaaaaaaggttgcatttgcatgccaaagttgtggtttctttgctaaccttatcttgggcaaatataggaacaaagaagagcaatagatgaggatgatgtggacccaaagtttctgcaaaagtatgcaattgatgccgatgacgatgagattgagaaggcgctgaacggaggaaagatttccgcaagcggtgttatcagtgtgaaatccaacaagacaaaggctgacaagcaagagaagcgcaaagaaatgaagaaatcaaaaaggaaaggaaatgatggagagaaatctgagtctaagaagaagaggtcttgaatcatcaatttaaattagcacttccagaaagttgacctcggtagcttgtgaaactcacgagaaacaagttgacctcggtggctcgtaaaacttaccagaaaaactccctgtgcatgctgaggaagccctgctaacacaaagcctcgaaaacgtgttcatctcacaaggggggctcaaaggagcagacaagttctccagaaaacatctggcaccagcagccatcaattttgatgtttcaatttcttagaatattactatagttttgctgtatcctcactgtagcacagttaattttgttatggaagaaaattgcagctt</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0170700, RefSeq:Os12g0170700