Os12g0175700

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Revision as of 10:23, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0175700| Description = Nonaspanin (TM9SF) family protein| Version = NM_001072824.1 GI:115487609 GeneID:4351648| Length = 4977 bp| Definiti...")
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Gene Name

Os12g0175700

Description

Nonaspanin (TM9SF) family protein

Version

NM_001072824.1 GI:115487609 GeneID:4351648

Length

4977 bp

Definition

Oryza sativa Japonica Group Os12g0175700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:3854871..3859847

Sequence Coding Region

3854923..3855048,3855931..3856123,3856240..3856344,3856462..3856479,3856575..3856663
,3856754..3856906,3857081..3857215,3857327..3857493,3858227..3858321
,3858529..3858902,3859135..3859408,3859498..3859565

Expression

GEO Profiles:Os12g0175700

Genome Context

<gbrowseImage1> name=NC_008405:3854871..3859847 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:3854871..3859847 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctgctccccacctccgcctccgcctgccgcggcagcggccgcgcgctcctcctcgccctcgccgccgccctcctcgccctcgccacgccgcgccccgcctccgcctccgagtcagaccacaagtacaaagttgaagaaccagttaagctctgggtgaacaaagtcggcccttacaataatccacaagaaacttacaactatcacagccttccattttgtcaaccatctgagaaccctgcgcataaatggggtggtcttggagaggtcctgggtggaaatgagctgattgatagtcagattgacataaagttcttaagaaatgaggagaggggctccatttgtacacttgagcttgattctaaaaaggttcagcagttctccgatgccattgataactcatactggttcgagtttttcatggatgatctgcctctttggggttttgttggggagacggacaaaaacaatgaaaacaagcgttatctctacacacacaagagcattcttgtcaaatacaatgataacaggatcattcatgttaatctcacccaagagtctcctaagcttcttgaagctggtaagaaattggacatgacatattcagtgaagtggttacaaacagatgtgacctttgcacgccgctttgaagtatacctggattatcctttctttgagcaccagattcattggttctccattttcaattctttcatgatggttattttcctcactggtttggtttcaatgatattgatgcggacattgagaaatgactatgcaaagtatgctcgtgaagatgatgatctggagtcactggagagagatgttaatgaggaatctggatggaagcttgttcatggtgatgtatttcgccctcctcgaagtttggcctttctttctgcagttgttggcatcggcactcagctggcagctcttatccttcttgttattgtattggccattgttggcatgctatatgttgggcgagggtctatcatcacaaccttcattgtgtgctatgctcttacatcttttatttctggctatgtcagtggtggcctctactcaaggaatggtggtaaaaactggataaaggctatgatccttacagcatccctatttccattcttgtgctttgcaattggctttgttctgaatacaattgctatcttctaccgatcattagcggcaataccattcggcacaatggttgtcatgttcgttctttgggccttcatttcttttccgctggtgcttctgggaactgttgttggtaggaactggagtggtgctcctaacaatccctgccgagtaaagactattccacggcctattccagagaagaagtggtaccttacaccttctgttatctcattgatgggtgggctgcttccctttggcagtatcttcattgagatgtactttgtgttcacgtcattctggaactacaaggtttattatgtctacggcttcatgctgctggtctttgtcatccttctaatagttacaatctgtgtcactattgtgggtacttatttcttgctgaatgctgagaactatcactggcaatggacttcatttctctctgctgcatcaactgcgttatatgtgtatctatattccatctactactatcatgtaaagacaaagatgtcaggttttttccagacgagtttctacttcggttacacattgatgttctgccttggtctaggcatactttgtggtgctattggctatctagggtcaactctttttgtgaggagaatctacagaaacatcaaatgtgattag</cdnaseq>

Protein Sequence

<aaseq>MLLPTSASACRGSGRALLLALAAALLALATPRPASASESDHKYK VEEPVKLWVNKVGPYNNPQETYNYHSLPFCQPSENPAHKWGGLGEVLGGNELIDSQID IKFLRNEERGSICTLELDSKKVQQFSDAIDNSYWFEFFMDDLPLWGFVGETDKNNENK RYLYTHKSILVKYNDNRIIHVNLTQESPKLLEAGKKLDMTYSVKWLQTDVTFARRFEV YLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERD VNEESGWKLVHGDVFRPPRSLAFLSAVVGIGTQLAALILLVIVLAIVGMLYVGRGSII TTFIVCYALTSFISGYVSGGLYSRNGGKNWIKAMILTASLFPFLCFAIGFVLNTIAIF YRSLAAIPFGTMVVMFVLWAFISFPLVLLGTVVGRNWSGAPNNPCRVKTIPRPIPEKK WYLTPSVISLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFVILLIVTICVT IVGTYFLLNAENYHWQWTSFLSAASTALYVYLYSIYYYHVKTKMSGFFQTSFYFGYTL MFCLGLGILCGAIGYLGSTLFVRRIYRNIKCD</aaseq>

Gene Sequence

<dnaseqindica>53..178#1061..1253#1370..1474#1592..1609#1705..1793#1884..2036#2211..2345#2457..2623#3357..3451#3659..4032#4265..4538#4628..4695#agctcgtgagtcgacccgaccctcctcagatctcgccggcggcagcggcggcatgctgctccccacctccgcctccgcctgccgcggcagcggccgcgcgctcctcctcgccctcgccgccgccctcctcgccctcgccacgccgcgccccgcctccgcctccgagtcagaccacaaggtgcgtgtgctcgctcgctagcctatccccctccctctcgatctaaaacctcttcctaccccccctacacgcacgctcgagctggtcgcacccccggcgccagatccgggcaaccatgcgcgcgatctcgctctggttgtggccggtgcgagcgttcgtgcgggtccggtcgccgaggatgttactacaattgttccgcgcgcgcgcgcgcgcgcgtagagaatggaattttagtgagatcaggaatgcgccgttggtttccgtctctcaagagcttgtggatgttgtgtgcgtagtggtgtgcgccgtataatcgcaacaagaaaagaaaaataatcggcaggaaaataggttgtagattatggtagtggaaaaatacttactcatcatcgcgctcccctgtgttcaaagcttgagatcgagactacgcgatccttgtgtgtatgtagcacatgatctaaattgaggcagcaatgtcttacactatggtacatggtgttttccaggaaaaaaaaggaatttcacgccttgatgctttattgcgtactttaaagtcaagattaagcactagctacgatgtgttcttatgactgaggacagtttctggtatagtaaggtcaatagtgttgtttggtttcaagaaatgtgctaacagctagccttgcgttacctataaattcttccatggcttctcttgcatgttggcatgcatcttggttagaagtagtagacaaaaatataacgagtgagaatttgcagcagaatatcttaagtgctgtttcctttcctaaaataaattcattattatgtttaccataattccatggtagaactttgtgagctcaacagttctcatctgccttttatgcttcttatatgcagtacaaagttgaagaaccagttaagctctgggtgaacaaagtcggcccttacaataatccacaagaaacttacaactatcacagccttccattttgtcaaccatctgagaaccctgcgcataaatggggtggtcttggagaggtcctgggtggaaatgagctgattgatagtcagattgacataaagttcttaagtatgtcaatctttctttcattctatccttttgtttatctactatttgctctaatgccccacagattggtgtattttcttgtcttatgaattgtataagtgcttcctttggtttaggaaatgaggagaggggctccatttgtacacttgagcttgattctaaaaaggttcagcagttctccgatgccattgataactcatactggttcgagtttttcatgggtatgtgaatcgatattttgatttgggtagtaacattgtgttttttaaagttctttttgtttctgacattgtatttttatcaactgtttttgcattcttggtgcaatattctcctagatgatctgcctctttggggtatgtttctatcaacctgtacttccattgatttctctgtcttttttccctgcacttcttttcttaactagattttggctatgtgctttaaacaggttttgttggggagacggacaaaaacaatgaaaacaagcgttatctctacacacacaagagcattcttgtcaaatacaatgataacagggtacgagttttgcataaaagtgataaaacttttcattaccacattgcttttgacatgataacataatttgatctcattttattattttagatcattcatgttaatctcacccaagagtctcctaagcttcttgaagctggtaagaaattggacatgacatattcagtgaagtggttacaaacagatgtgacctttgcacgccgctttgaagtatacctggattatcctttctttgagcaccaggtaatattttcccactccaaagaaaaaaaaactatgcgtaacatgcagctctcagcttgcttacttatgtgaaagagaaaaaatgttaattgtaacaacagggagctgaatcgtcttgttctttttgaaagttgttcaaaggttctgacttctatgcaaatttctaatgttcagattcattggttctccattttcaattctttcatgatggttattttcctcactggtttggtttcaatgatattgatgcggacattgagaaatgactatgcaaagtatgctcgtgaagatgatgatctggagtcactggtatatctaccttttgtttaattgtattcttagctctagcatctaagttggatttgttttcacctagtgccactcgattgggacctcaagtcttgatattccttttgttaggagagagatgttaatgaggaatctggatggaagcttgttcatggtgatgtatttcgccctcctcgaagtttggcctttctttctgcagttgttggcatcggcactcagctggcagctcttatccttcttgttattgtattggccattgttggcatgctatatgttgggtaagcaacccccatccccaaaatctccttgcacatacaatgcatagtttggaatacctgagttgctgaccaatgaaactaccatattactcaatagatgaaagaaagaagatagggaatacctgaacttgttaggttcccaccacatgttttttgaaagctgtccaggaaccttccatgtcctgtactttacctggaaaatcttgattctgcagtaatcaatttcaataatgaagaattgttctgaatctaacatgcataatagacaattttgttaaaatgtcttggattaaattttctgcatctggttggtatgacttaaaactactgggaactggctcaccactcaccagtcgtctgaacctgagaaacaacggcacataggttgttaagtgcagataacattttggtcaaacgactatttcttgtttatgtcctaaccatgctgaaaagaactaagaaaagaaaggaactgtaccttttcattgtccaaaaattgccttgtattgtgtttctcactttactggttggagtggtggaatgtctgccttctgttaaaaatgcacacatccattagcccaaatccctaaggcctgtgattgtatgaatcctaaagatataaaattcctatattattttgaaaacagctttaagtttttttcttttttttagcatttcacattttgtgcatggatttgcttttctaacttatatagcgcgcgatatttgtcaggcgagggtctatcatcacaaccttcattgtgtgctatgctcttacatcttttatttctggctatgtcagtggtggcctctactcaaggaatggtggtatggttctttccttttggaattgcattattttcttgtattatttgtctgtgcaattcaatctcttctcaaggttctgtttcatagtttcctcctgtcattcctttttttttttttgaagtttctagaatttgcatgttgtcatatattatattttcccacttcatgatgtatggttttttgaaccgtaatttccttacatggcaggtaaaaactggataaaggctatgatccttacagcatccctatttccattcttgtgctttgcaattggctttgttctgaatacaattgctatcttctaccgatcattagcggcaataccattcggcacaatggttgtcatgttcgttctttgggccttcatttcttttccgctggtgcttctgggaactgttgttggtaggaactggagtggtgctcctaacaatccctgccgagtaaagactattccacggcctattccagagaagaagtggtaccttacaccttctgttatctcattgatgggtgggctgcttccctttggcagtatcttcattgagatgtactttgtgttcacgtcattctggaactacaaggtaaacagtttaacttaagtatccaagtttgttttggaaacagaagtagtgcctatggtgtactggtgttcaacctcttatatggctgcttcataaattacacaatttattttttgaatgaactcttggtggatttctaatatgtctgcttcatacatctgtctatgcactttgtttaattttaataatatggataatttgatcgtgacaattcgtttgacttccttggcaggtttattatgtctacggcttcatgctgctggtctttgtcatccttctaatagttacaatctgtgtcactattgtgggtacttatttcttgctgaatgctgagaactatcactggcaatggacttcatttctctctgctgcatcaactgcgttatatgtgtatctatattccatctactactatcatgtaaagacaaagatgtcaggttttttccagacgagtttctacttcggttacacattgatgttctgccttggtctaggcatactttgtggtaagatcttaatttctactagtaccttttaatccgtgacactttatcattatgatgtttttgttttgacatctgttttggcgattcaggtgctattggctatctagggtcaactctttttgtgaggagaatctacagaaacatcaaatgtgattagatgatcgcagtttggaagacatagcagatcacatgttgtcactggaactgtggtagagaggccaagaagtggattaatgctagatgctgattaagttttttgagccacagaccgaaggggggccatgatctcctaacttaatataaatacattcatacgcctactctcttttttgactatgtcgccctgattatgcatacctgtggtagttgaggatttggttggttttttaatcagaagtaggatgtaacattgtaacatgtgaaatattcatgcggcact</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0175700, RefSeq:Os12g0175700