Os12g0176600

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Revision as of 10:23, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0176600| Description = SWIRM domain containing protein| Version = NM_001189885.1 GI:297728900 GeneID:9266524| Length = 5676 bp| Definition...")
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Gene Name

Os12g0176600

Description

SWIRM domain containing protein

Version

NM_001189885.1 GI:297728900 GeneID:9266524

Length

5676 bp

Definition

Oryza sativa Japonica Group Os12g0176600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:3878470..3884145

Sequence Coding Region

3878470..3878500,3878593..3879147,3879252..3879811,3880694..3880999,3881105..3881236
,3881657..3881790,3881973..3882049,3882118..3882260,3883410..3883667
,3884119..3884145

Expression

GEO Profiles:Os12g0176600

Genome Context

<gbrowseImage1> name=NC_008405:3878470..3884145 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:3878470..3884145 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcctcctcgcaaggccacctcctccgcagatgctcgggccaagtggcggaagcggaagcgcaacgcgaacacctccgcggccgaccactccgacgactccgactccgcggtggctgcggcggcgaacgacgacaacgacgacgacgacgcggcgctccacgcggccaccgcggccgccaacgggggaggcggaaccctaggcgggggcgatgacgaccccgtggtggacctccgcgaggccgaggtgcaccccacggcgatcgagcgcgtctccgccttcccgcccgcgttccgccgcgtggtcaaccggctccacccctccgtgctcgccgtcatggcggcggagcgcgccgccgccgcggctggtgctggtgctggcggcggcggcgcggccgtccccgcgctcgagaacatctctcacgggcagctccaggtgctctcgtccgtgctccctgaccacccgtccttgtccaacgaccccgacaagccgtcctcctacgtctgcacccctcctctactcatggagtgccgcggcgtggccaagcagttcgatggcaaattgctcatggtacccaagcattcagattggttcttgccaatgacggtgcacaggttggagaggcaagtgctgccgcagttcttctcagggaagtccccggggcacacgccagagaaatacattatgttgaggaatagggtaattacaacgtatctggagcgtcctgcgaggaggcttgcattttctgagtgccaagggcttgtcacaagcacgcctgaattgtatgacctgagtagaattgttaggtttttggacgcttgggggattattaattaccttgcggctgggtctgttcaacggggcttgaggatggcagcaacactaatcagagaggagccaacaggggagctgcatctcatgtctgctccattgaaatcaattgatggtttaattttgtttgatcgaccaaaatgcagtgtccgggcagaggatattgcttctggggcatcactttcatcttctccagggatggaaaatggtgatgctggttttgatgagaagacattgttggagagattgtctgagagcttttgtagtttctgcgcacaacctttgcctagcttgcactacgagtcacaaaaggaggcagacattgctctttgctcggattgcttccacgatgcaagatttgttactgggcactcaagcttagattttcagagagtggatgggaagaaagatggactggacaatgatggggacagctggactgatcaggaaacatttctgttattggagggcatagacaaatacaaagaaaactggaatgctgttgcggagcatgttggaacaaagtcgaaaatacaatgtcttcaccattttcttcgtcttccagtagaagatggattgttagagaatattaaagtaccagaagcatccttttcatcgaaattttggttgatgcaaaatgcttctggctccgtttttaaattgccacaattgtttgccttaggaagcttgcctcaaagcggcgaagctggagaccttcctttcattaacactgctaatcctgtcatgtcactgatctctattatgtctctggccttactgttcagagatgatttgcagattgcatttttggcctcttcattaggaccaagagttgcggcatcctgtgcaagtgaagcattaattgttttgactggaggtgactccaggatcagttcaattggcaatgatgttatgggccatgctgctcgaccgaactgtggtgactaccttattcctaaaattaattcctcattggctgtctcttcagaaaatgttagacatgctgcaagatgtggcttgtcggcagcagcaactaagtgtaaactttttgcggatcaggaggagcgtgaaattcagagattaagtgctaccatcataaatcatcagttgaagaggctggagttgaagttgaagcaatttgcagacatcgagacctaccttttgagggacagtgagcagtccgagaggatgaggcaggggctgcaagctcagcgcatccggatgatgtcagggcttcggttagcttcacccagaggcaacactatggcctcaaatccattgagtcaagcgaacattcgaccgccaggaataccgggatcgatgccccaggccggcactccagctttctactccaataacatgcaggtagagtgggggtattttagaatttag</cdnaseq>

Protein Sequence

<aaseq>MPPRKATSSADARAKWRKRKRNANTSAADHSDDSDSAVAAAAND DNDDDDAALHAATAAANGGGGTLGGGDDDPVVDLREAEVHPTAIERVSAFPPAFRRVV NRLHPSVLAVMAAERAAAAAGAGAGGGGAAVPALENISHGQLQVLSSVLPDHPSLSND PDKPSSYVCTPPLLMECRGVAKQFDGKLLMVPKHSDWFLPMTVHRLERQVLPQFFSGK SPGHTPEKYIMLRNRVITTYLERPARRLAFSECQGLVTSTPELYDLSRIVRFLDAWGI INYLAAGSVQRGLRMAATLIREEPTGELHLMSAPLKSIDGLILFDRPKCSVRAEDIAS GASLSSSPGMENGDAGFDEKTLLERLSESFCSFCAQPLPSLHYESQKEADIALCSDCF HDARFVTGHSSLDFQRVDGKKDGLDNDGDSWTDQETFLLLEGIDKYKENWNAVAEHVG TKSKIQCLHHFLRLPVEDGLLENIKVPEASFSSKFWLMQNASGSVFKLPQLFALGSLP QSGEAGDLPFINTANPVMSLISIMSLALLFRDDLQIAFLASSLGPRVAASCASEALIV LTGGDSRISSIGNDVMGHAARPNCGDYLIPKINSSLAVSSENVRHAARCGLSAAATKC KLFADQEEREIQRLSATIINHQLKRLELKLKQFADIETYLLRDSEQSERMRQGLQAQR IRMMSGLRLASPRGNTMASNPLSQANIRPPGIPGSMPQAGTPAFYSNNMQVEWGYFRI </aaseq>

Gene Sequence

<dnaseqindica>1..31#124..678#783..1342#2225..2530#2636..2767#3188..3321#3504..3580#3649..3791#4941..5198#5650..5676#atgcctcctcgcaaggccacctcctccgcaggtacgtgccccccctcctcgcctcgcacttccccctcgcggggacctcctcccgcgctgacgctggcggccaaaaccctacctcccctgtagatgctcgggccaagtggcggaagcggaagcgcaacgcgaacacctccgcggccgaccactccgacgactccgactccgcggtggctgcggcggcgaacgacgacaacgacgacgacgacgcggcgctccacgcggccaccgcggccgccaacgggggaggcggaaccctaggcgggggcgatgacgaccccgtggtggacctccgcgaggccgaggtgcaccccacggcgatcgagcgcgtctccgccttcccgcccgcgttccgccgcgtggtcaaccggctccacccctccgtgctcgccgtcatggcggcggagcgcgccgccgccgcggctggtgctggtgctggcggcggcggcgcggccgtccccgcgctcgagaacatctctcacgggcagctccaggtgctctcgtccgtgctccctgaccacccgtccttgtccaacgaccccgacaagccgtcctcctacgtctgcacccctcctctactcatggagtgccgcggcgtggccaagcagttcgatggcaaattgctcatggtacccaagcattcaggtttgtttccttgaatcgaagagctcctgaaatgtgccatactagttgagctgaacactaaattgacttaagctgtgtggtatgggttgatttggaaatcgtagattggttcttgccaatgacggtgcacaggttggagaggcaagtgctgccgcagttcttctcagggaagtccccggggcacacgccagagaaatacattatgttgaggaatagggtaattacaacgtatctggagcgtcctgcgaggaggcttgcattttctgagtgccaagggcttgtcacaagcacgcctgaattgtatgacctgagtagaattgttaggtttttggacgcttgggggattattaattaccttgcggctgggtctgttcaacggggcttgaggatggcagcaacactaatcagagaggagccaacaggggagctgcatctcatgtctgctccattgaaatcaattgatggtttaattttgtttgatcgaccaaaatgcagtgtccgggcagaggatattgcttctggggcatcactttcatcttctccagggatggaaaatggtgatgctggttttgatgagaagacattgttggagagattgtctgagagcttttgtagtttctgcgcacaacctttgcctagcttgcactacgagtcacaaaaggaggtgtgtataattctgactgccaattagatatttatcattcttcaaatgttgaatacacaagccagtaataatatttggtggaattagattatatttgacaccattagatggagtaatttgatcttaagaacaatcagagtccaattgaactaataaggagttttgtatcttctatgtatgtgcactggacaactattgtaaaatggatggtgtattgtctagtgtgcgaaactgcatttttgtagcagatccatttaagatattgatgtgcatatgcagtgttctaaaagtcaccgataggcgctagataactgcagtgattaggtattaggatggtgcattaggctaacctgtcttcagggctcttgttctgctattttagtgttctactacctctgttctcaaatagatgacgttctagaatgtgtgtaatcaaacctcgatatcgtgtatcattaataagatattaggattttatatgtgaattgtattaacagatttgtcctgaaaaacactttcatatagttatttctaataatttttataaatctaaagttaagaaaagttaatgatgagacatgtgcattggatattgtgtcgatgtccaaattgtaaagtaaaataataatggaggtagtattgcctatcttcttttgtaatatgcctgataattgcttagaattctctagttaggctggtcctagttgccacccctgttgaccctcttgcacaaagtgccttcttgaatcatgtgcatcttcatggatatctatatctcttgcgtatttagtaattttattctgctttctcttgagaaatccctttctttctgaaagaagcttgtaaaggtgtttcaggctttccttttaactgactaagcaggcagacattgctctttgctcggattgcttccacgatgcaagatttgttactgggcactcaagcttagattttcagagagtggatgggaagaaagatggactggacaatgatggggacagctggactgatcaggaaacatttctgttattggagggcatagacaaatacaaagaaaactggaatgctgttgcggagcatgttggaacaaagtcgaaaatacaatgtcttcaccattttcttcgtcttccagtagaagatggattgttagagaatattaaagtaccagaagcatccttttcatcgaaagtacaaaacaatggttttttgcattcaaattccaatggcagtacttcaggtttattcattgtttctttactgaaaaacttaacatttttttgtgttggatatcagttttggttgatgcaaaatgcttctggctccgtttttaaattgccacaattgtttgccttaggaagcttgcctcaaagcggcgaagctggagaccttcctttcattaacactgctaatcctgtcatgtcactggtgagtgactgcagactatgttgtttattatgtcattgcactgctcaattcaaatttgggtgctgaaaccattatgctccattgcaatatcagtcatcttcactgcttttatacagcccacttttagtgatatacatagtttcttgccattgaccgaattctcaaattaaaaaacacctgatgtaagacagctgggatttattgtataggcaaaccacagctttagttgcaaagccatgggcattttattatttaatatctcgtgcagaccatcatttagaactaacatgatagcttgcggcatgggacaagacatggaaacataatatctaggtggaacttagtagataggtagaaaactatgatagtaatctcccacatactggatcattctccccagatcttgtcagtttattgtagatctctattatgtctctggccttactgttcagagatgatttgcagattgcatttttggcctcttcattaggaccaagagttgcggcatcctgtgcaagtgaagcattaattgttttgactggaggtgactccaggtgagccacctatgctgtgtaagggaggtttagggatgagattaatgaactcttagctccgacatgttataccagttctataactggagtgtaaattgttctacttcgggtctttacacttacttttcactttatctcaccttgctggatttctcttaacacaataatgttcatcaattaaggatcagttcaattggcaatgatgttatgggccatgctgctcgaccgaactgtggtgactaccttattcctaaaattagtaattccgcatccttcagtctttcttttcaagatgttactctaacatgcagttttattttaatacagattcctcattggctgtctcttcagaaaatgttagacatgctgcaagatgtggcttgtcggcagcagcaactaagtgtaaactttttgcggatcaggaggagcgtgaaattcagagattaagtgctaccatcataaatcatcaggtttgttggaatacagaagttcacattctgcaatttgttctaatggtaatgacaatctagttagcttcatattcttttgtggcattgtttttatttgtattaaactagctgatttgcccgtgtgttgccacggaatcaaaggatttgaactagggagcacaaaattttcaccgacattgagggtccgacacgtcagtgatagggtgttgtggtggtagattcactaccactaccactaccactaccactaccactaccactaccactaccaacatttatagtagtatagagtacttccgtttcaggttataagactttctagcattactcacattcatatagatgttgatgaatctaggcacacatatatgtctagtttcattaacatatatatgaatgtgggcaatgctagaaagtcttataatatgaaaaggaggaagtatagatgaagcgttatcagtccttgctcatttctttttggacttgaagaagccttgaaatctgattctgaatggaattagctatagtgcagaaacaatattatgctaatttgataaaaacatggatcacaacggtcagtttgtgattggacgatgatagttcacaatctacagtgacatgtcaacaaactgaccaagcattgagaaacaaaagaggttgtgacttctgagcataaaagatagtcactgagtagcatcaacgcccattcggcaagtattggctttacccagtgggagagattttttttacaagttttgatgattctagctaatttggagtgtggataaaacagatcctcctgtgacaataattttaataagttttcagaaacttaattacccagggttaaaactggcttttagttaaaaccaggaggatccagcggggttgaatgttgatttatctttggaaccttaactagcctagtagcctgttttagtgttaaccaaccacctggtaattgacatcagttgtcctccaggagttggttcctaaatctgatatgaaatttatgcatgtgatgtgggggttaatgactgtccaatatgtcattttcacttgattatgccatactggctgatatttgatgtggctttcatcattttcatttggactctttgctgttatttttgtaatactcatttgcagttgaagaggctggagttgaagttgaagcaatttgcagacatcgagacctaccttttgagggacagtgagcagtccgagaggatgaggcaggggctgcaagctcagcgcatccggatgatgtcagggcttcggttagcttcacccagaggcaacactatggcctcaaatccattgagtcaagcgaacattcgaccgccaggaataccgggatcgatgccccaggccggcactccagctttctactccaataacatgcaggtgcacccacagatggctttcttgcagcagcagatgcagcaacagcaacaaaaacagcagcaacagcagcagatgcagctgcagcagcaacagcagcagatgcaactacagcagcaacagcagcgacaggccttcttgcagcagcaacagcagcagatgcaacagcagcagcagcagctgcagcaacagcagcagcggcagctgcagatgctctctttcgggggtcggttgcctctgtcagcgatgaacgctccctcaacctcggcagcgcccaatgtcatgttcgacaaccctgacatgcccggtccatcgaatcaaggttgagaccgccttctgggagcaattttagagtataggctgagtagagagatttccagacatcctagtttcttgatttgtagctctgattcgtgtgatagttaaccattgtaattcaattgcacaatcacaggtagagtgggggtattttagaatttag</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0176600, RefSeq:Os12g0176600