Os12g0178700

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Revision as of 10:23, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0178700| Description = Similar to Dynamin-like protein| Version = NM_001072839.2 GI:297612771 GeneID:4351665| Length = 7658 bp| Definition...")
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Gene Name

Os12g0178700

Description

Similar to Dynamin-like protein

Version

NM_001072839.2 GI:297612771 GeneID:4351665

Length

7658 bp

Definition

Oryza sativa Japonica Group Os12g0178700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:3985892..3993549

Sequence Coding Region

3986916..3986935,3987521..3987626,3987708..3987770,3988127..3988187,3988267..3988424
,3988752..3988834,3988944..3988992,3989169..3989232,3990272..3990364
,3990457..3990590,3991411..3991632,3991862..3991984,3992150..3992314
,3993111..3993497

Expression

GEO Profiles:Os12g0178700

Genome Context

<gbrowseImage1> name=NC_008405:3985892..3993549 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:3985892..3993549 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacgccgccggaatccctctcaccggctgcagcggcggtggaggatgattgggaggaggcgcgggggctgctgtacgaggcctacaacgagctgcagggcctggcggcggagctgggcggcgcggcggcgcccgcgccagcggtggtggtcgtcggccaccagacggacggcaagagcgcgctggtcgaggcgctgatggggttccagttcaaccacgtcggcggaggcaccaagacgcgccgccccgtcgcgctccacctccgcttcaacccgcgctgccacgccccgcgctgccgcctcctcgccggctcgggcgcgggggacgacgaggacgaagaggccggtgtcgccggccgcgcaatgccgctcgccgacatccaggcatacatagaagccgaaaacatgaggctggagaatgatccttcccaattttcagaaaaagaaattataataaggatagaatacaagcattgccctaatctcaccattattgacactccaggcctcatcctaccagctcctggccgtaaaaaccgagttttgcagagccaagcttgtgctgtagagacccttgttcgtgcgaaaataaagcataaggaaaccataatactttgccttgaagattgtagtgactggagcaatgcaactacaaggagagtggtgatgcaggttgatcctgatcttgcaaggactgttctagtctccacaaaactggacactaaaattttacagtttgcacgagcctctgatgttgaagtctttcttcaccccccgacctgtgctctagatggttccttactgggggattatccctttttcacatcagtgccttcggggagagttggctcctgccatgaagctgtattcagatcaaatgaagagttcaagaaggccatctcattgagagagttggaagatgtcgcatctcttgaggacaagttgggaaggggacttacaaaggaggagaaaaacagaataggagtgagtaacttgagactatttttggaagaattgctgaggaagaggtacattgagagtgttccattaattattccacttcttgagaaggaacatcgtggtgcaacaaggaagctgcgtgaagtcaatcaagaaatcagtgatttggatgaagcaaaaatgaaggagaaagctcgcctgttccatgattcattcttgtcgaagttatctttgctattgaaaggcatggtggtggcaccgcctgatagatttggagaaactttaattaacgagaggataaatggaggaacttttactggaagtgagaatttcctgatcccaaacaaattgatgcctaatgctggaatgcgtctctacggtggcgcacaataccatcgggcaatggctgaatttcgtctggttgttggaagtattagatgccctccaattactagggaggaaattgtcaatgcttgtggtgtggaagatattcatgatgggacaaactactccaggactgcttgtgtgttagctgtggcaaaagcacgtgacacatttgagccttatcttcaccagctgggttttaggttattatacataatgaagagactgattccgatatctgcttttctgttggagaaagatggtgagaactgtagcagccatgatgtacttgtgaagcgatgtcaaagctgtcaatttgatagagtttgcatgaatctactgagcaatcatgtcgtgaaagatgtatggaggatttggtga</cdnaseq>

Protein Sequence

<aaseq>MATPPESLSPAAAAVEDDWEEARGLLYEAYNELQGLAAELGGAA APAPAVVVVGHQTDGKSALVEALMGFQFNHVGGGTKTRRPVALHLRFNPRCHAPRCRL LAGSGAGDDEDEEAGVAGRAMPLADIQAYIEAENMRLENDPSQFSEKEIIIRIEYKHC PNLTIIDTPGLILPAPGRKNRVLQSQACAVETLVRAKIKHKETIILCLEDCSDWSNAT TRRVVMQVDPDLARTVLVSTKLDTKILQFARASDVEVFLHPPTCALDGSLLGDYPFFT SVPSGRVGSCHEAVFRSNEEFKKAISLRELEDVASLEDKLGRGLTKEEKNRIGVSNLR LFLEELLRKRYIESVPLIIPLLEKEHRGATRKLREVNQEISDLDEAKMKEKARLFHDS FLSKLSLLLKGMVVAPPDRFGETLINERINGGTFTGSENFLIPNKLMPNAGMRLYGGA QYHRAMAEFRLVVGSIRCPPITREEIVNACGVEDIHDGTNYSRTACVLAVAKARDTFE PYLHQLGFRLLYIMKRLIPISAFLLEKDGENCSSHDVLVKRCQSCQFDRVCMNLLSNH VVKDVWRIW</aaseq>

Gene Sequence

<dnaseqindica>6615..6634#5924..6029#5780..5842#5363..5423#5126..5283#4716..4798#4558..4606#4318..4381#3186..3278#2960..3093#1918..2139#1566..1688#1236..1400#53..439#aacgcacggcgcacttcgaaacccctcctaaaccacgcgtgacccaatcgcaatggcgacgccgccggaatccctctcaccggctgcagcggcggtggaggatgattgggaggaggcgcgggggctgctgtacgaggcctacaacgagctgcagggcctggcggcggagctgggcggcgcggcggcgcccgcgccagcggtggtggtcgtcggccaccagacggacggcaagagcgcgctggtcgaggcgctgatggggttccagttcaaccacgtcggcggaggcaccaagacgcgccgccccgtcgcgctccacctccgcttcaacccgcgctgccacgccccgcgctgccgcctcctcgccggctcgggcgcgggggacgacgaggacgaagaggccggtgtcgccggccgcgcaatgccgctcgccgacatccaggtaccgtgcgcacacgtgttcgtggaaatgccagtgtcgtgtgttgcgcctatccgttccaatctgatggcatctctattatgacagcattattcatgtaattgctggtgtcatatgctagcaggaggttttgtggtgctaggaaatgatttatttgcgaaattggtgaaatataaaactcgtttaagaagaaccaggaaggggggaaatgagggcatgaggtgtatgaatgtaatgtaacgcacttcatttgtttgtgtgattatcctttctgtagctatgttatgctgtactaggctagcttaactaactctatctgtctactatgaattcaatgttgtggtttcggctagtatgatatcggtattaggtaacttaatgaatgagatcgaagggagggagccgtgttactgatattttcttaagaaaagaggattctagcctctatgggctagtacaccaactatgctgataaccgctagatgccaggagtctaacctttgccgattaaatgatgaatagatgctatattcactataaagggtagttatgtcaatactcaatataaatagttttgacgccaaactgatacgagaattttcccagttgttaattatttattattgtcaacctgaaacatcaatattttattttagctgtttcatttgtaagaaacaaatgttcacttgttgatttcattattatcaacttacagcttagaactcagagaagattcaagttattggactgttcttgcattaggtgattgacattttataggaatatttactttcaggcatacatagaagccgaaaacatgaggctggagaatgatccttcccaattttcagaaaaagaaattataataaggatagaatacaagcattgccctaatctcaccattattgacactccaggcctcatcctaccagctcctggccgtaaaaaccgagttttgcaggtatttccccctattcttgcttgctgtcagttaaggctgattcttttcagcctttaaggtcttttgtttccactgaaacttcactttctatgaccctactatgaactcctttttattatattaatatttaataaggttatccattggtaatcttgcgacctgcagagccaagcttgtgctgtagagacccttgttcgtgcgaaaataaagcataaggaaaccataatactttgccttgaagattgtagtgactggagcaatgcaactacaaggagagtggtgatgcaggtttgcactttaaaactagcttttcttatcaaaaggtgctcaatgacattctcatggtctcttgtgattccacattagttgtaccttatttactgggttactatgtttaaacaaaaggcgtgcttactatatcaagttcaaacttcaaacgttcaacacacaattattttgttaacctgtaagcagtgccagtaagctatgttttgtgtttccctttttcatactgcaggttgatcctgatcttgcaaggactgttctagtctccacaaaactggacactaaaattttacagtttgcacgagcctctgatgttgaagtctttcttcaccccccgacctgtgctctagatggttccttactgggggattatccctttttcacatcagtgccttcggggagagttggctcctgccatgaagctgtattcagatcaaatgaagagttcaagaaggtgagacatcacgtgccagtatcacttaacatagagatttatgttctgccaaagtgttcgaataattttcttttgctggcaagtttgatgggtgttactttgttaagtcactgtgagttttgtaagcaatatgtgggcaagccaattggtcatctggtcctatttgctgtgaaatttttacattatcaaggaagattacctgattattaaatgataaattagaaacaattattaatttgttttatatggatgcaaatctacattttaagtattgtaggttccagaatttaaaatttgcaggtaacttttagaatatagttatatatgtgaaaaacccatgtaggtttaaatatttttgtaggcagttgggttttactccgtagttaactattctggagttacactatatgtttcatgatagcttgtggatcttgtaatacatggaaatacccgatacttcccaaactctataaatggctacccttaaatatgctcccatatttctgcgcacttttatatgatcaagacatcacaggaagaaagtgttacaaacacataatcctacttcactactgcttatttcttagtttcagtaatgtaaatagactgatcacccttaaatattactgttcgggaaggacatttgaaatgtgacgaataacttctttgttgaacataaatgctgccagcattcttctctgttgtcacctgtttagtcagtttcagtatgctttttcgctgatatgaactctactaatctggtaacttctgtcttaccttcatccttgaattgcctctaatggttactttcattctgcaggccatctcattgagagagttggaagatgtcgcatctcttgaggacaagttgggaaggggacttacaaaggaggagaaaaacagaataggagtgagtaacttgagactatttttggaagaattgctgaggaagaggtatccttgctcattatagagctggcatgtgtatgttttttaattattcttcgtatcattgctttgaagtaatgcatactaatatggccaaggtacattgagagtgttccattaattattccacttcttgagaaggaacatcgtggtgcaacaaggaagctgcgtgaagtcaatcaagaaatcaggtgattcatgatgcctatcattcatagcacacttaaaaggatggattaatttcctccttaaattacttgtatttgtttccatataataaatttttctttggtgaagttgaaagcttataacgaaaacaaggctcaaatgttttattcttactgggaaaatcgctgccaactactagcacctaattgcaaataactgtcctggtggactatattagttgacattctagtaggctagtagcaccctcataaagattcaagaaccatcacgctaccatggtttatgttatctttcttcagtcccaatgcagtgctatcagatgcaaccttgaggccgggagctgcaacagtgcaacctccaattccttggcttctatgctatgcttcgccaaaacattcaatcatgagccaattacaagtgaaaattattccttgctttccagattgaccaagtgtagcagcagtaaatttattcactacttatttctggaatcacttacaaagttgagtgacagcctcaaaatctcaaccaatttatctccggaatagatccgatttatctgaaatctcatgctaaattatttgagcaatgccagaaccaaagaacaaatgatgaatattacacgggatattacaacaagaacatcaactgaagattggaaatttgttagccatacaatgccaaattgaaatttaactttgtactaagccttgccctgatgggtttgtttgagtcttcttagattcttttccttcttaatataatgatgcgcagctctcttgcacatttgattaaaaaaaaaagatccatcccaggcatcagcaataaatctttactgttcactgagtgaaatttaagcctcctaatattgaatggcaaggctggaagaagcaaaccaatgaccctcccagaataaaactcaaacatgttatttatttttcctttttccccttgtgtgcctttacacggttccaccatatatttatccctgttgttaaacatgcctgatataccctgctgatggtatatgtatctggacagtgatttggatgaagcaaaaatgaaggagaaagctcgcctgttccatgattcattcttgtcgaaggtgcttactactctgaaacatatattattgttgatgcagatagttggatactgaaacttttgcaatgaagaaaagttcatgcgttgtcacacatatgcagccaatgcccactggatctattgctcagcagctggttgaaataaacctgaatactgatttactgtttcttgtttcagttatctttgctattgaaaggcatggtggtggcaccgcctgatagatttggtgggtgttttatcttgtgcggctcggtaccagaaaacttgaggttcttcttagttggctgactttctgattttgtcaataatttattgaaactgttattggagtgtaggagaaactttaattaacgagaggataaatggaggaacttttactggaagtgagaatttcctgatcccaaacaaattgatgcctgtaagttctgtttttttcctctgtattgaagatgccctactattttctgtaggttcttattttgagcctttaaacaggatgtaatgattcttcactgtagataaacattttaatagattgtatctaaattggtggttcttgacgagcctaaagtttgttagcagtgacagattgatttatgtagcagtagagtcatttttctttcagataaagacaaaaagtctaccatatctatcgtcttttcagcctgttaaaacaaaattatccactgagtgtttgacacactgtcttttgaatatgcactcattataccttttcttttcttagaatgctggaatgcgtctctacggtggcgcacaataccatcgggcaatggctgaatttcgtctggttgttggaagtattagatgccctccaattactagggaggaaattgtcaatgcttgtggtgtggaagatattcatgatgggacaaactactccaggtagtctcattccatatatcaggcatactttgactatatttatatagcacatttactcattttcaactttttttgttaggactgcttgtgtgttagctgtggcaaaagcacgtgacacatttgagccttatcttcaccaggttggttagcttacctcatgggtgggcacattaataatcacatttagatggtcctgttcagctttcatgattgttattccacacttgagctactggaatagtacttgcttttgtgtgattatgtcaataaaatcatcaaccgatttttttcatgcacgtcccatcattttttggatcaagttcagaactagagtgtgccagggttccacagaaaatgtgtgaaatcaataaaaaatgtaacatgatgtataaacaaatttagtaattgaattaatttgttgtggtctgtatgaggggtgatatttcctctgcttaatccctttctgcgattaaaatctatccttaattatgtgcagctgggttttaggttattatacataatgaagagactgattccgatatctgcttttctgttggaggtactaattaatcctgaagttattcagttcaactagtattctgctcttttcttttgtaataccgtgatagaattccaacagaaagatggtgagaactgtagcagccatgatgtacttgtgaagcgatgtcaaagctgtcaatttgatagagtttgcatgaatctactgagcaatcatgtcgtgaaaggtaatactgtaagagcatccttgatttcaatacctttataattgtttcccttctagtgtacaactcttgttcaagtggtcttgcaaactcagttcaacaaactctttgatatcaaatgaaatgcatttccctagttgattattgtgctatcaggcatacagtattttatggtgttggcaaactagttagtttttttttaatagtggttctacttagaaatgtatcagctgaattataatatcattgaataataaagtgcaaatgaagtgaactgaatgagttatccgtatctttgtcatgtcttccctcctttttgatctcatggcattaaattttgtgcgttccagagcatattcatatttgaaaaatgtgattttagtggtttgtctcatgtaaatatgacacagaatttagtgttgtgtcaaagtaaaactttctgttattgtccagatttctcctgaatcttcatggcatgatgcattcatgcatattgtttgtacctgatggttcatggcatgatgcattcatgcatattgtttgtacctgatggcatgatttatctgcatgttgaaatgtgtaatgcagatgtatggaggatttggtgagcaccactcgttatgtcacttggtcccttcacaataaggtacagttattaatattaatcagaactagtatctttcgagggattcgtcgcattcctaatgatttgctacattgtatagaaccgtgccggattgagacacttctttgattcctttgttgcacaagagcaattatccgtgaacacacttactgcccactcgactgggctgcatgagcaatcctttggcttgaatgacaataagcaggataggccaaagggagacttcaaatcaagtaattcttcagaagcaaattcacccactgttgcatcagagactaggcttgttgatctcttggacagcacactatggaacagaaggctggcaccctcatctgaaagacttgtgtatgcactggttcaccagattttccatgggatcaaagagcattttcttgtcaccacagagcttaaggtctccctgcagtaaatcctgcactccttaacgagtatatgaagtttattgtttatatcttgttttgctcatcaaaattgcagttcaattgctttctcctcatgccgattgttgacaaattaccggcgcttctaagagaagaccttgaatcagccttcgaagatgatcttgacagcatatttgatgttactcagctgcgccattcacttgggcagaggaagagagatctggagatcgaattgaagcgggtactagtcttttgcgtattttttttttgcacatcaagcattactacctcagtattcttatttgcaaatttgctggtttcagatcaaacgcttaaaggagaaattcgcagagataaacaagaagctgaattctctccaggttagacagtaagctactctaggagaagcagagcaactagctactctagtcgagttagattatttctatgctgtaataataataatcccttagtgtgtaataataatagtctagtgtgattatgacttctttgttggatcttttcatgtgtaaatatacatatattaacccttccaatgtcgtttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0178700, RefSeq:Os12g0178700