BGIOSGA036957

From RiceWiki
Revision as of 08:31, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA036957| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA036957, complete gene.| tag = OS12G01...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA036957

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA036957, complete gene.

LocusTag

OS12G0136200

Ensembl Transcript ID

BGIOSGA036957-TA

Ensembl Protein ID

BGIOSGA036957-PA

Length

4913

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:2028188..2033100

Sequence Coding Region

2028188..2028604,2028687..2028797,2029407..2029547,2029626..2029796,2029896..2030100
,2030189..2030361,2030472..2030554,2030742..2030881,2031061..2031137
,2031203..2031302,2031490..2031594,2032472..2033100

Genome Context

<gbrowseImage1> name=IndicaChromosome12:2028188..2033100 source=RiceIndica12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome12:2028188..2033100 source=RiceIndica12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCCAAGGAGGACAGATAATGCTGCTTCTGCCAATTCAGTTGAACCAGAAAAATCAGAAGAATGTTTGGAGTTTGATGATGATGATGAGGAGGAGGTAGAAGAGGAGGAAATTGAATATGAAGAAATTGAGGAGGAGATAGAAGAGGAGGAGGTAGAGGAGGATGAAGATGTCGTGGAGGAAGTTGAGGAGGTAGATGAGGAGGAAGATGAGGAGGAAGAAGAGGAATCTGATGAAACTGAAGGTGTAAGTAAAACTAAAGGTGTTCACCAGAAGGATGTTACTGAAAAGGGAAAGCATGCTGAGCTTCTTGCTCTTCCTCCCCATGGTTCTGAAGTATATGTTGGAGGCATCTCCAGTGATGTATCTTCTGAAGATCTGAAGAGACTATGTGAACCAGTTGGAGAAGTTGTGGAAGTGAGAATGATGAGAGGAAAGGACGATAGCAGGGGATATGCTTTTGTTAATTTTAGAACAAAAGGTTTGGCATTAAAGGCTGTCAAAGAATTGAACAATGCAAAACTGAAGGGAAAGCGGATAAGGGTTTCTTCCTCGCAGGCTAAGAACAAGCTTTTTATTGGAAATGTACCCCATAGTTGGACAGATGATGATTTCAGAAAGGTTGTGGAGGAAGTTGGTCCAGGAGTATTAAAAGCTGATCTCATGAAGGTCTCAAGTGCAAATCGCAATCGGGGTTATGGTTTTGTTGAATACTACAACCATGCATGTGCAGAGTATGCAAGGCAGGAGATGTCTTCCCCAACATTCAAACTAGATTCAAATGCTCCTACAGTCAGCTGGGCAGATCCTAAGAATAACGACTCGGCCTCTACTTCTCAGGTTAAATCTGTATATGTGAAAAATCTGCCCAAGAATGTTACTCAAGCACAGCTGAAAAGGCTATTTGAGCACCATGGTGAAATTGAAAAGGTTGTTCTTCCTCCTTCAAGAGGAGGTCATGATAATAGGTATGGTTTTGTTCACTTTAAGGACAGATCCATGGCCATGAGGGCTCTGCAGAACACAGAGAGATATGAGCTTGATGGTCAGGTCCTGGATTGCTCACTTGCGAAACCTCCTGCTGCTGATAAGAAGGATGATAGAGTACCACTACCTAGTTCAAATGGAGCTCCATTGCTCCCGAGTTATCCTCCACTTGGATATGGTATCATGTCAGTACCAGGTGCCTATGGTGCTGCTCCTGCTAGTACTGCACAGCCTATGCTGTATGCTCCAAGAGCTCCTCCAGGTGCAGCAATGGTTCCAATGATGTTACCGGATGGTCGTCTCGTATATGTTGTACAACAGCCTGGTGGACAGTTGCCGCTGGCTTCGCCGCCGCCGCAGCAAGCTGGACATCGTAGCGGCAGTGGAGGACGTCATGGCGGCAGTGGCGGCCGCTATGGCGGTGGTGGTGGCAGCTCCGGCAGTAGCAGGCCAGAGGAACGCGTTTCTGAAACAAGACTGTACATGCGTATTTTACCTGTATCGCAGAGTGCTGAATCTGATGGTGCACTGTACCGTCAATTCACCCCTGTAAGCCACATGGACTATGAGATTTCTGGGCCAGAATCTGAGGTAGACAGTGAGGTGTGGCTTGGCTGGGTGGCGCAGCGACGGCGGCGCCGGGCCACAGCTCCATATTCCGGTCGACGGCGAGTCCACGAAGCATCGGACGCCGGCGACGACACTGCAATCCGGCGGTCCTGGCAGCAGGTGAAAGAGATTCCAACCAGCCTTGATGACTTCCTGCCAAGCATCAGGACAACATGCACACACACTCATACTTGCAACCCGCCTGGTCCATCGGCAACAGAGCACACCCATACATGCTACCACACTCACACCCGTGTCTTCAGCTCAGATGATGATAGTTGTGGAGGTGACAAAGCCAAGCCAAAGAAGAGCCGCAAGCCATTGGGCAACCGCGAGGCTGTCCGCAAATACCGGCAGAAGAAGAAGGCTCATACAGCACACTTGGAAGAGGAAGTGAAGAGGCTCCGTGTCATTAACCAGCAGCTGGTGAAGAGGCTGCAAGGGCAGGCTGCACTTGAGGTGGAGGTGGTACGGTTGAGGTCGTTACTGGTGGATGTGCGATCGAGGATCAATGGTGCATTGGGTAGTTGCCCGATCCAAGCACAATGTGGAGTTGATAATGTTTTGGGTTGTGATGGAATGGCTCAGTGCTTTGCTGGAAAGCCGGAGTTGGGTGTGAGACAGAGTTGTGCACCTTCTACAGTGAATTGCCATATCAGCTCGGATTCAGGGCAGAACCTGGTGGTGCCCCATGCTTTAAGCCCTAGCGATGTTATTGGAAGCTTCATGGTCTCATCTACCTCAAAGGATGAGTAG</cdnaseq>

Protein Sequence

<aaseq>MPRRTDNAASANSVEPEKSEECLEFDDDDEEEVEEEEIEYEEIEEEIEEEEVEEDEDVVEEVEEVDEEEDEEEEEESDETEGVSKTKGVHQKDVTEKGKHAELLALPPHGSEVYVGGISSDVSSEDLKRLCEPVGEVVEVRMMRGKDDSRGYAFVNFRTKGLALKAVKELNNAKLKGKRIRVSSSQAKNKLFIGNVPHSWTDDDFRKVVEEVGPGVLKADLMKVSSANRNRGYGFVEYYNHACAEYARQEMSSPTFKLDSNAPTVSWADPKNNDSASTSQVKSVYVKNLPKNVTQAQLKRLFEHHGEIEKVVLPPSRGGHDNRYGFVHFKDRSMAMRALQNTERYELDGQVLDCSLAKPPAADKKDDRVPLPSSNGAPLLPSYPPLGYGIMSVPGAYGAAPASTAQPMLYAPRAPPGAAMVPMMLPDGRLVYVVQQPGGQLPLASPPPQQAGHRSGSGGRHGGSGGRYGGGGGSSGSSRPEERVSETRLYMRILPVSQSAESDGALYRQFTPVSHMDYEISGPESEVDSEVWLGWVAQRRRRRATAPYSGRRRVHEASDAGDDTAIRRSWQQVKEIPTSLDDFLPSIRTTCTHTHTCNPPGPSATEHTHTCYHTHTRVFSSDDDSCGGDKAKPKKSRKPLGNREAVRKYRQKKKAHTAHLEEEVKRLRVINQQLVKRLQGQAALEVEVVRLRSLLVDVRSRINGALGSCPIQAQCGVDNVLGCDGMAQCFAGKPELGVRQSCAPSTVNCHISSDSGQNLVVPHALSPSDVIGSFMVSSTSKDE</aaseq>

Gene Sequence

<dnaseqindica>1..417#500..610#1220..1360#1439..1609#1709..1913#2002..2174#2285..2367#2555..2694#2874..2950#3016..3115#3303..3407#4285..4913#ATGCCAAGGAGGACAGATAATGCTGCTTCTGCCAATTCAGTTGAACCAGAAAAATCAGAAGAATGTTTGGAGTTTGATGATGATGATGAGGAGGAGGTAGAAGAGGAGGAAATTGAATATGAAGAAATTGAGGAGGAGATAGAAGAGGAGGAGGTAGAGGAGGATGAAGATGTCGTGGAGGAAGTTGAGGAGGTAGATGAGGAGGAAGATGAGGAGGAAGAAGAGGAATCTGATGAAACTGAAGGTGTAAGTAAAACTAAAGGTGTTCACCAGAAGGATGTTACTGAAAAGGGAAAGCATGCTGAGCTTCTTGCTCTTCCTCCCCATGGTTCTGAAGTATATGTTGGAGGCATCTCCAGTGATGTATCTTCTGAAGATCTGAAGAGACTATGTGAACCAGTTGGAGAAGTTGTGGAAGTAAGTACTGCTTACATTGTTCATTTTATGTTTCCATGTGGCCTGTTTTGTTCTGAATTACATATTCTCCCGTTTTATGCAGGTGAGAATGATGAGAGGAAAGGACGATAGCAGGGGATATGCTTTTGTTAATTTTAGAACAAAAGGTTTGGCATTAAAGGCTGTCAAAGAATTGAACAATGCAAAACTGAAGGTTTGTTTTCTGTTGAACTTGAGAAATGTCTATACTGTCACTCCATCAGTGCCATTGATTTTTAACCTAAGATTGGTAATTGATCAAGCAAGTTCTGGACATTTTTACTACACCTTTTGCAGTTTCCAAATGTGAACTGGTAGAGAACAAAATAGTGATTTCACTCGAATATTATTATGCAATAAGCTTTCCTTTTTTTTAATTTTTTTTCAGTCTTATTGCACTTATATCTGCAGTTGACTTCTGTTGATTTTGACATAGCACAGTAATTTCACACATCAGCTGTGCTCCCTGTTTCCCTGGATATGTAGGAAGAAAGAGGGAGGGGCACACACATATCTACTATACATGATCTCTAGTAATATCATGGTTTTGTAACGTGTAATATTTGGTTAAAACTACTGATTATGCCATTAACAGGAAACACTTGTTCATGATTGGGAGTAGTGGTAGCTTATGTTCTCTTACCAATAATTTTGGAAAACATAGCTTTGCTGCCTTGATCACACACATGTGCAGAATATCTCCTGGTTCCCTGTTATAGCTAACAACTTATCTATCTTGATCTTTTATACCTACTGATTTTTTTCATTATGCTTCTCATTACAGGGAAAGCGGATAAGGGTTTCTTCCTCGCAGGCTAAGAACAAGCTTTTTATTGGAAATGTACCCCATAGTTGGACAGATGATGATTTCAGAAAGGTTGTGGAGGAAGTTGGTCCAGGAGTATTAAAAGCTGATCTCATGAAGGTATGGATCTGGGTAGTCGAACAACTTTGTTATGCACCCTCGATCTTGTTTCTCCTAAAAATTTCTTTGTACTTGTAGGTCTCAAGTGCAAATCGCAATCGGGGTTATGGTTTTGTTGAATACTACAACCATGCATGTGCAGAGTATGCAAGGCAGGAGATGTCTTCCCCAACATTCAAACTAGATTCAAATGCTCCTACAGTCAGCTGGGCAGATCCTAAGAATAACGACTCGGCCTCTACTTCTCAGGTTCGTTCAAGCATAACATGAACAATTTTACTTTGTTTGTGTATAATTCTTATACCATGATGTTTTATTTGAACTTGATTATTTTGCGTGTGTTTTCAGGTTAAATCTGTATATGTGAAAAATCTGCCCAAGAATGTTACTCAAGCACAGCTGAAAAGGCTATTTGAGCACCATGGTGAAATTGAAAAGGTTGTTCTTCCTCCTTCAAGAGGAGGTCATGATAATAGGTATGGTTTTGTTCACTTTAAGGACAGATCCATGGCCATGAGGGCTCTGCAGAACACAGAGAGATATGAGCTTGATGGTGAGCTTTCCTCTTGCGCTGTAATGTCCCACTATGCTTAGTCTGGTTTGTCTGGTGCATTCAAGGTCTCACATATTTCTCTTAACAGGTCAGGTCCTGGATTGCTCACTTGCGAAACCTCCTGCTGCTGATAAGAAGGATGATAGAGTACCACTACCTAGTTCAAATGGAGCTCCATTGCTCCCGAGTTATCCTCCACTTGGATATGGTATCATGTCAGTACCAGGTGCCTATGGTGCTGCTCCTGCTAGTACTGCACAGGTACACGAGTACATCATCATCATAGACCCCTTTGCCCAATCAATGAGTAAATACATGTAGTAAAGGATGATTGATGCCCTTCTAACCATTGTATGCTCTGCATTTTGCAGCCTATGCTGTATGCTCCAAGAGCTCCTCCAGGTGCAGCAATGGTTCCAATGATGTTACCGGATGGTCGTCTCGTATATGTTGTGTAAGCGCTACCAACCATCTTTTCTTCAGAAAAGCTAATAACATGTTATCACCTATCAGCATGAGATGAGATGAAATGACTTCTGTTTGGCATTTCATTTTGGCATTTCATTTTGGCATCAGAAAAGCTAATTACATGTCATTTTGGCATTTCCATTGCTGATGATATCTTCATTGCTCCTTTGCAGACAACAGCCTGGTGGACAGTTGCCGCTGGCTTCGCCGCCGCCGCAGCAAGCTGGACATCGTAGCGGCAGTGGAGGACGTCATGGCGGCAGTGGCGGCCGCTATGGCGGTGGTGGTGGCAGCTCCGGCAGTAGCAGGCCAGGTGCAAAGCGGCAGAGAGGAGACGACAACAGCAGTAGCCGCCACAAAGGCCGGCGCCGCCCGTACTGATCTGATCAGCGTAGCTGTAGCTACCACTTAGAAGATGTAGTGTCGTTGCAGAAAATTACCAGAAAATCTGGTAGAAATAATTTATACTGTTTGTACTCGTCGATTTATTAGAGGAACGCGTTTCTGAAACAAGACTGTACATGCGTATTTTACCTGTATCGCAGAGTGCTGAATCTGATGGTGCACTGGTACAGTATAAGCCAGTTTCAGGTCTCTTTGTAAGCCTGTTTTACATTATCTTTCGCTTTTCCAGTACCGTCAATTCACCCCTGTAAGCCACATGGACTATGAGATTTCTGGGCCAGAATCTGAGGTAGACAGTGAGGTGTGGCTTGGCTGGGTGGCGCAGCGACGTGTGTGCTCAAGACTGGAGACACGGTTGCTGCTGCCCGAGCTGAACACGTCGTGTTGACTCTCTCGAGAGGCGGACGGGTACGTGCCGCCCCTCCATCCATTCTAGCCTTCTAATCTAAAAGCATCCACGGGCTCTCTGGTGCGCTGCTTCTCGACTAGACGCCTCCTCCGGGGAACCTCGTACAGGGCGGCGCCGGGCCACAGCTCCATATTCCGGTCGACGGCGAGTCCACGAAGCATCGGACGCCGGCGACGACACTGCAATCCGGCGGTCCTGGCAGCAGGTGAAAGGTGCGTGCTTTCTCCGCCTGAGTATGATTGGTTTAATTCCCTTTGCAATTAACTTGCAAATTCTTTTTCTAATTTGTGCATCGAAATTTCCGGCCATATGGTGATTGTACATGTTGTATTGGACTTCTAGGCGCCGGATTGGCCAACTTCTAAATTTATGATGCTTTCGCGCATGACAAAAATGACAGATCATATTTATCCATTTACTTCATTCTAATGAAATAACTCCTAGTTAATTATCTTTAGGTTGCTCATAGAGTCATAGTTACTCAGGGTTGGGCTATCCGGCTATGCTGTACCGTTCTATATTCATTGATATTTTGCCTGCCCAATATTGTACGCGAAGTGCTACAGTTAACATGATCATCAATGATGCTAGGTGTCTGATTTCCCTGAAACATGTTAGGTTCATGATGCTGATCTTTATTTATATACGAACTGTTATGTATGCTCTATCTGGTCAAGTCATGCTTGATAGTTGATACATCCTTTTGTTCTGAAGAATTCTAGTACAAATTTAGGTTTTTGAACAACAGGGCAATGTCAAAGGTTGCAATTGTTAGGTTAGCTTCAAATATACATTTGCAGCATAAACTGCCATGTCTCTGTCCAGTAGTTATGCCAATGTTTAACCTAGATTATTTCATTTACTTGAGGAAACATTTTTTTTGAATTTAGTTTCTCTACTCTCTGAACAATCCAACCTGGTACTGTTATCTGATTCTGTGAATTTTCTGAACTTTATACAGGGCCTATTTGGTGTAAGAATTTATATATCCGCCCACTCATTTAGTCATCTGCATCTTCTAAGTTGGGTGAAAAAATATGGATGATGGGGAGATAGAGCTTTCCAGCCAAATGATGTTTCCAAATCCAGAGATTCCAACCAGCCTTGATGACTTCCTGCCAAGCATCAGGACAACATGCACACACACTCATACTTGCAACCCGCCTGGTCCATCGGCAACAGAGCACACCCATACATGCTACCACACTCACACCCGTGTCTTCAGCTCAGATGATGATAGTTGTGGAGGTGACAAAGCCAAGCCAAAGAAGAGCCGCAAGCCATTGGGCAACCGCGAGGCTGTCCGCAAATACCGGCAGAAGAAGAAGGCTCATACAGCACACTTGGAAGAGGAAGTGAAGAGGCTCCGTGTCATTAACCAGCAGCTGGTGAAGAGGCTGCAAGGGCAGGCTGCACTTGAGGTGGAGGTGGTACGGTTGAGGTCGTTACTGGTGGATGTGCGATCGAGGATCAATGGTGCATTGGGTAGTTGCCCGATCCAAGCACAATGTGGAGTTGATAATGTTTTGGGTTGTGATGGAATGGCTCAGTGCTTTGCTGGAAAGCCGGAGTTGGGTGTGAGACAGAGTTGTGCACCTTCTACAGTGAATTGCCATATCAGCTCGGATTCAGGGCAGAACCTGGTGGTGCCCCATGCTTTAAGCCCTAGCGATGTTATTGGAAGCTTCATGGTCTCATCTACCTCAAAGGATGAGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA036957