Os12g0209000

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Revision as of 10:24, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0209000| Description = Similar to Ycf45 protein| Version = NM_001072923.2 GI:297612840 GeneID:4351767| Length = 5036 bp| Definition = Oryz...")
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Gene Name

Os12g0209000

Description

Similar to Ycf45 protein

Version

NM_001072923.2 GI:297612840 GeneID:4351767

Length

5036 bp

Definition

Oryza sativa Japonica Group Os12g0209000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:5683918..5688953

Sequence Coding Region

5683918..5683929,5684118..5684198,5684696..5684746,5685415..5685558,5686034..5686318
,5686422..5686494,5687176..5687396,5687500..5687577,5687679..5687741
,5688753..5688953

Expression

GEO Profiles:Os12g0209000

Genome Context

<gbrowseImage1> name=NC_008405:5683918..5688953 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:5683918..5688953 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccccgtcgcccacccgcctcctccacctccccctcctcgccccgaagccctcgccgccgcggtgtctcgtcagccgccggagtcggccccggcctgccggcgacgccgcccgctgcggctgcgccacggaggcaggtggcggcggtggcggtggaggctccgtcgtcgtcgaggatgatctctatgagctcctgcaggttctaccaagagatttgcgagataatctgcagaatgaacctagaaaggatcagcttttagaggttattctggatttggggagacgacctgaggcacgtttccttggtgactctggtggccaatatctacgggacagtgagatctcacagcaagaattggaggaggcgcagagagctgtaggagaatttggaggtgacaatcgtgcaggaatcgaaggtacattacatagaatatctgccataaggagcagaaaaggaatggttgttggtttaacctgtcgagttggccgtgccgttactgggcatgttgatatggtccgtgatctcttaaattacaaagaaagcattttgtttcttggaaggcctggggttggcaagactactgttatgcgtgagattgcacgtgttctagcagatgaatttcagaaaagagtggtaattgtggatacaagtaatgagattggtggggatggagatattcctcatgctgcgattggtggtgcaagaagaatgcaagtagctcaaccatcaatgcagcatagagtgatgattgaagcagtcgaaaaccatatgcctgaggtggttattgtagatgagataggtactgaagcagaggcgcaagcttgtcgatcaattgcagaaaggggtgtgatgcttattggtacagctcacggagaacatctcgcaaacattataaagaatccaactttatctgatttgattggaggagtagaaactgtcactcttggtgatgaagaggcccgtgctcgccgcagtcagaaaagtattctggagaggaaggcccctccaacattccctttccttattgagatgagggagcgacactactgggtaactcatcggactgaaaggagtgtggacatgttacttcatggcaagaaaccacttgttgagcgtgttgttggtattgattccaaagacttgtcaagttatagtactgctactccggcaaaggaactggtgctgttcattgagaaaatgaagtga</cdnaseq>

Protein Sequence

<aaseq>MAPSPTRLLHLPLLAPKPSPPRCLVSRRSRPRPAGDAARCGCAT EAGGGGGGGGSVVVEDDLYELLQVLPRDLRDNLQNEPRKDQLLEVILDLGRRPEARFL GDSGGQYLRDSEISQQELEEAQRAVGEFGGDNRAGIEGTLHRISAIRSRKGMVVGLTC RVGRAVTGHVDMVRDLLNYKESILFLGRPGVGKTTVMREIARVLADEFQKRVVIVDTS NEIGGDGDIPHAAIGGARRMQVAQPSMQHRVMIEAVENHMPEVVIVDEIGTEAEAQAC RSIAERGVMLIGTAHGEHLANIIKNPTLSDLIGGVETVTLGDEEARARRSQKSILERK APPTFPFLIEMRERHYWVTHRTERSVDMLLHGKKPLVERVVGIDSKDLSSYSTATPAK ELVLFIEKMK</aaseq>

Gene Sequence

<dnaseqindica>5025..5036#4756..4836#4208..4258#3396..3539#2636..2920#2460..2532#1558..1778#1377..1454#1213..1275#1..201#atggccccgtcgcccacccgcctcctccacctccccctcctcgccccgaagccctcgccgccgcggtgtctcgtcagccgccggagtcggccccggcctgccggcgacgccgcccgctgcggctgcgccacggaggcaggtggcggcggtggcggtggaggctccgtcgtcgtcgaggatgatctctatgagctcctgcaggtgtccacttaccctctctcgtttctttatctcaccttctcaattctttttttagctgctcatgcattccttgcttcaattttggagctgttgaatgttcttcaatctttatcacaatgaagaaatcaaagaacattgcaataaccaagtattattatttgacatgggttatattatactattccctccgttttatattataaatcgttttgatttttttcttaatcaaaccttttttaaatttgacaaagtttatagaaaaatatagcacgtcaaaatatattaaatgttagatctaataaaattaatttagttctataaatattgttatgttttttctataagtttagtcaaatttgcaagaggtttgaattaaaaaagtcaaaatgacttataatacgaaatggagggagtagtagatagcctcagctagagagctgttactgcaaccacctttgttgttggtaacctctcgaatgctgaccccagttatgttcataaccttttgaatggcgaactccagcttactatgtcgaatgaagatggctgtgaaagctcaattatacatcacatccagttaacaggaatctctgcacatctaatgtaaatgagactgatctaataatcaagctcttgatgattatgcagttgatcaatgttacataggtggggaactgaggataacgactgttctgtttagtgatggcagagatggtgataaacatgtttagtttgcatcatctgctcttagtccagcactagctattagtgtaagaagagacgaacatcctaccataaattcttttaaataaattgctaggatggccatgttactgctctgagatgaatttgtttcaatagaaactaaaatctttatgcccatcgtgtttctaagtgcaaagccatttctctcatccatacttgattagactgttgtgtactagtaatttggtataagtggttcttgtatgctagttgagtgacagaggggcaccaatatatcctttacaggttctaccaagagatttgcgagataatctgcagaatgaacctagaaaggatcagcttttagaggtaagctagatgctgctgagctctgtcgtatttgaatattccagtgaaattaggctattatggatttgcaaaaataccctagctgatgaatgggtgattaggttattctggatttggggagacgacctgaggcacgtttccttggtgactctggtggccaatatctacgggacagtgaggtataaagctacaatagtacaattttgtccagttcacatagttatgttttgcttcctgtgtattgacaactaatttatgttctctggattgtttgtacgatagatctcacagcaagaattggaggaggcgcagagagctgtaggagaatttggaggtgacaatcgtgcaggaatcgaaggtacattacatagaatatctgccataaggagcagaaaaggaatggttgttggtttaacctgtcgagttggccgtgccgttactgggcatgttgatatggtccgtgatctcttaaattacaaagaaagcattttgtttcttggaaggtatgtcgcctttcggcttcaacatttttatcatccttttattattccttttattaaatataaggtacccccaaaattgctcagtactacttgcaaacattactagtattacaagagtgaccatatttttttttaattcagcagcatctaaagtagtcttaatctgtgcataactgttcagcaacacgagtctatgaccttatgtttttacttcccttttccaggatattctatgaagtgatattgtgatgatatttcaaatgatcaagctttctatattttgcagaactaattaaagaggaattaaaggaaaaggacctaaaattctccagataaattcatataatataacctttctgatagtccatgatgttgaatcaagatgttgcagttaagtaaaatgcaacctctatggctggaagagatcttctttagaccttcgattgtaactagatcactccttggttagattaagaaatataccaagaaccgacatagtttgggaggatttatcatcatacaaatctggaattccatgtatgctgtagtctgattgttacaaaacacattttacatatgctgtccactcatgtcccttcagggactcaggcaaggtgtggtgtagtcatgtgcattttaatgcaatttgaaatttcattgatttgtgttttatttggccaggcctggggttggcaagactactgttatgcgtgagattgcacgtgttctagcagatgaatttcagaaaagagtggtaactaatcgatgttacaatcttgcagactttcttactcatgttcactttcttcatatttaattccttacatgttctatcggtgtattgatgtttagggcaggtaattgtggatacaagtaatgagattggtggggatggagatattcctcatgctgcgattggtggtgcaagaagaatgcaagtagctcaaccatcaatgcagcatagagtgatgattgaagcagtcgaaaaccatatgcctgaggtggttattgtagatgagataggtactgaagcagaggcgcaagcttgtcgatcaattgcagaaaggggtgtgatgcttattggtacagctcacggagaacatctcgcaaacattataaagaatccaactttatctgatttggtatgccattattcacttaatttgcattagatgcatactgtgtccttctgttcaatatataacttttacattgcatcttactcaatgcagaaatgtcaaatgcctaaaatgagcttgactgagagtagtattctttcatttgctgtcatcctataagcaggttcatttgctgtatctgtagttgcaaaagcctagaattgttctgctattattggttgaaaatggactgtgaagatgacaagtgccattgtcttatcatgtcattcaaagtcatttttttgtcatttgcttatggataacaatatgtagttaacagtatgtcttcgagcatcctatccaaatttcttacatcttacatccttgcttttcgagagttcaattgcagatttgtttaaataaacaaaatttcagataaaaagagcataatttatgggccattcagtcatattgtaattctattttgttggaaaatcagattggaggagtagaaactgtcactcttggtgatgaagaggcccgtgctcgccgcagtcagaaaagtattctggagaggaaggcccctccaacattccctttccttattgagatgagggagcgacactactgggtaactcatcgggtatgtctatcaggctacaatctacatatgtcaaacggtcatgaatatgtaactttcaacttcaccttaataaggtgatttaagctgatgctgaactagaatgctctgaactgaaaatgaaaaccaagtaaaaaacatcagatttgcacggaaacaatatatgtcttagttaagatccatatatatgtgcttgcaggattctgtgtaaagtgtaggaattgatgggggaaccaaatatgatcatcaattcatcatattttgcagtactaatgcatttcctaattcacagttttacttatattgttctaacttgtgaactagtagtattcttatgtcctgactaggcatgatcagcaatgattttatatcacacaactgaaatatatataaacgttatattttttttcttgaccaaatgctaggttaatgagatagttatttactataatgctaggttaatgactggttgcctttgcgataattactctttcttacatcatccttattgaattgaactacttgttcactatttctattgctgctctatttttcaactatttttttttcaaagctgaagatgcttcctaaaggttatcacctctaaattaattttatagtattgttcactgggcgatgaatacaatacatggtgtctgttttatgtgcagactgaaaggagtgtggacatgttacttcatggcaagaaaccacttgttgaggtaatataaagctagcaatttcatgacgataaatgcaagattttttgtgtgtgtatgtgtgtgtagttttctgtaccactagttaatcgtctgatttacctgtaagtttcgcttgcaagcataatattctatttgccattgtgctagctgcgaactagagcattccaatgttgattctatgggtaaaattatctaagttattctttatttcagtgcaatgttgttctttagcaaagcaaaatcttcatttctgtagtgattctctccatgcaataatttcagtccgaacataatgtataaagcatcaactgacaacttgtcacatttcaggtcaggaaaagggataacaagtttcaggttgtcattgaaagatgggcaacgtatgatggagatggactctgaaattctgaatatgagcttacctgttacagttgcttttatcaaactgcatgttcccgtccctcaggatccctgtggactaatgtatacttattcagcgtgttgttggtattgattccaaagacttgtcaagttatagtactgctactccggcaaaggaactggtgctgttcattgaggttagtgcacaatttccatgctgttgctctcaatcaattgcatataagtttttcttttcttttccagttcaaaatcgtttttctctgaatcatgatagggtttatttgtgtagacttgaagttataaatgtattttctgttttggcactgaaaatgattgtgtattggttatatttctcatatggcagaaaatgaagtga</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0209000, RefSeq:Os12g0209000