BGIOSGA037580

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Revision as of 08:41, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA037580| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA037580, complete gene.| tag = OS12G05...")
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Gene Name

BGIOSGA037580

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA037580, complete gene.

LocusTag

OS12G0556500

Ensembl Transcript ID

BGIOSGA037580-TA

Ensembl Protein ID

BGIOSGA037580-PA

Length

7870

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:18177826..18185695

Sequence Coding Region

18177826..18178113,18178570..18178631,18182773..18182845,18182949..18182998,18183074..18183594
,18183784..18183944,18184025..18184231,18184328..18184448,18184587..18184661
,18184754..18184860,18185113..18185200,18185291..18185416,18185559..18185695

Genome Context

<gbrowseImage1> name=IndicaChromosome12:18177826..18185695 source=RiceIndica12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome12:18177826..18185695 source=RiceIndica12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGACGGCAACAAGCGGCGGCGGACGCGGAGGCGGCTATCCCTGGCCACCGCCACCGCCGGCGACGGCGACGGCGACGGCATGGCTGCGGCGCCGCCTCCGGCGAAGCGGCAGCGTTGTCATGCGGTGGAGGAGCTCCCGTCGCCGAGGAGGGGGCTCCTGCGGCAGAGCGTGCTCGTCGTCGTCTTCCTCAGGCGCGCCATGCTCCTCGCCTGGGGGGGCAGGAAGGCGGACGACGACGACGGCGGCGGCAGCGCGGCGGTCGGCGTCTCCCGGATTGGTGGCGTGGTGAGAGATGAACTCCGTCGCTGTCTTGGACCAATTGCGAGGAGCTTCTCGCTGCAGTTTAGCAAACTGGAAAGGAAACTGGAAAGCAGACTGGAAAGAATTGACCAGCGGATTGAGAATCTCAACCATAAAGTGGACCAAATAACACCGTTACGACGTAGCCACTGCAATCACCAGCACCCAATGCAGGGGACAAATAATGAAGGGGCCAATGCTGAAGGAGTGGAGACAAATGAAGACGATGACAAAAACACATGTGTTCGGCTTCGATTTCTGAATGAAATGAAACCTCCTATTTACCATGATGATGAGTTAAAAGCTGAGAACAGCGAAGATATTCGGATTGGCATATTTGATGGTGAACAGATGATAAAATCAGGCCCTCTTTCGAAGGTGAAACTTGAGATATTGGCCCTTGAGGGAAATTTTCCGTATAATAGCATGGAGAGTTGGACTACTAAGGAGTTCAACGAACACAGAGCTTGTGGCCGGGATGAAAGAGGCGATGTGTTGGCAGGTGAACGCACTGTCCAGCTGATCAATGGAGAGGCCTCTCTTGGTGCCATCAAATTCAGAGAAGGGTCATGCAAGGCCCGCAAGGGTAAGTTCATCCTTGCAGCAAGAGTTTGTGACAGTGCAAGAACTGGTGTTCATGTTCAAGAGGCTGTCATGACGCCTGTGGTTGTGCAGGATCGCAGAAATAAATCAAATGAAAAGAGTCATCCTCCAAAGCTGGACGACAAGGTTCATCGCTTGGAGGAAATTGCAATTAATGGAATATACTGCAAGAGGCTTGTGGAGAAGGGCATAAAAACTGTGAAAGACTTCTTAAAGGCTCTAAACAAGGATCCTGATAACTTGGCCAATATTCTCCACATGAAGAAAGGATCCAAGGCCTGGGAGAAAATGGTGACACATGCCAGGGACTGCAGCCTCGAAGGCAAGCCCGAGCTGAAATCGTATCCCGTTGCTCAGACAAACGTGGTGCTCATCTTCGATTGCGTGAATTCTCTTGTTGGGGCATGGTTTGGTGGCAGTTACATTGCATCTGACAGCCTCAGTTCAGCTCAGCAGGTCATAGTGGACAAGTTGAAAGGGGAAGCATATCAACTATTAGATCAGCTTCCTTTTGATTATATAATGGAAGGCGGGTTTCCAATACTGAATCCTATGAATGCGAATGCCGATTATCGAGCTCAAGGTACTGAAGCAGTTGGGGGCTTGGATCATGCTCAGATTGATCCATCATTTGCAAATGCAAACTATCAAGATCAAAGTACTGCACAAGCTGGTCAGGAGCAATTCTCCTCTGCTGCTGTAGCTGGTTGGTGCCAGGATTCAATTGCGCAACCTAGCTCTTCTCACCAGACAAATCATGTAGTCTACCCTGGTGGAGCTCAAGTGAATTACAGTCACCAAACTAACTGCGTTGCGCCTTGTGATTACCCATGCCAAGGAGCATCCATGGTACCAGGATTTGATCAGGTGGAACTTCAGGGGAGGCCCTTCTTGGGCAGAGATGACTTGGAAGCATCAACTTCTGCTCACAACAATCTGCCATTTCCACCACAGCAGCAGTTTACATTCAGTGGTGATCCAGGATCATCAGCTCAGGTGAACATGCAGAGCCAGGGGAACTCAAAGCCATCAACTTCTACTACTCAAGGCAATCTTCCAACACAACAGCAATGGTCCCAATCTCAATACCATGGAAACAACTGGGGATAA</cdnaseq>

Protein Sequence

<aaseq>MDGNKRRRTRRRLSLATATAGDGDGDGMAAAPPPAKRQRCHAVEELPSPRRGLLRQSVLVVVFLRRAMLLAWGGRKADDDDGGGSAAVGVSRIGGVVRDELRRCLGPIARSFSLQFSKLERKLESRLERIDQRIENLNHKVDQITPLRRSHCNHQHPMQGTNNEGANAEGVETNEDDDKNTCVRLRFLNEMKPPIYHDDELKAENSEDIRIGIFDGEQMIKSGPLSKVKLEILALEGNFPYNSMESWTTKEFNEHRACGRDERGDVLAGERTVQLINGEASLGAIKFREGSCKARKGKFILAARVCDSARTGVHVQEAVMTPVVVQDRRNKSNEKSHPPKLDDKVHRLEEIAINGIYCKRLVEKGIKTVKDFLKALNKDPDNLANILHMKKGSKAWEKMVTHARDCSLEGKPELKSYPVAQTNVVLIFDCVNSLVGAWFGGSYIASDSLSSAQQVIVDKLKGEAYQLLDQLPFDYIMEGGFPILNPMNANADYRAQGTEAVGGLDHAQIDPSFANANYQDQSTAQAGQEQFSSAAVAGWCQDSIAQPSSSHQTNHVVYPGGAQVNYSHQTNCVAPCDYPCQGASMVPGFDQVELQGRPFLGRDDLEASTSAHNNLPFPPQQQFTFSGDPGSSAQVNMQSQGNSKPSTSTTQGNLPTQQQWSQSQYHGNNWG</aaseq>

Gene Sequence

<dnaseqindica>1..288#745..806#4948..5020#5124..5173#5249..5769#5959..6119#6200..6406#6503..6623#6762..6836#6929..7035#7288..7375#7466..7591#7734..7870#ATGGACGGCAACAAGCGGCGGCGGACGCGGAGGCGGCTATCCCTGGCCACCGCCACCGCCGGCGACGGCGACGGCGACGGCATGGCTGCGGCGCCGCCTCCGGCGAAGCGGCAGCGTTGTCATGCGGTGGAGGAGCTCCCGTCGCCGAGGAGGGGGCTCCTGCGGCAGAGCGTGCTCGTCGTCGTCTTCCTCAGGCGCGCCATGCTCCTCGCCTGGGGGGGCAGGAAGGCGGACGACGACGACGGCGGCGGCAGCGCGGCGGTCGGCGTCTCCCGGATTGGTGGCGTGGTGAGTACCCGAGCTTCATCTCATCCATGGCTGCGAAAATTCCTCCCTTTGCTCTCAACTCTATCTCATAATAATTAATTCTACTTATCATTCATTTAAATATGCCCGTAGTTATTTCTCGTAAATAAACGATTCATTAATATTTATATTTCTCAATACCCATACATACATGTAGCCAATTTTGTGTAGTTAGATTGAAATATGTCTATCAAAAGTAATTTTTTTAGATTTAAAAATATACCTATGAGAGTAGATAGAGAGAGTAAATAAATAAATAAGTAATCTTTATTTGGGGTTGGATTCGATTCCCATTTTGGGATCGAATCAGACATCCAAGATTCGGGGGGAAAAGCAAGAGAGCTTTCTTGATGGAATGGATTATTCATATCTCTGCAACTTCATAACCTCGGGGCCTTAGCTGACGACTTGTGCTTAATTTGTTCTGTGGATGGATAGGTGAGAGATGAACTCCGTCGCTGTCTTGGACCAATTGCGAGGAGCTTCTCGCTGCAGTTTAGGTAATAATAACCTTTTATTCCCTGTAATTAATCACAAGATTTACTACTTTGTTCATGCGCTTGCAGAGAGATGCATTTTAGCTCCTCTTTCTGTGAATTGCTAAGTTACAGCAAAAATTTAGATAAAGATCAGTAACCTCAATTATTGTGCTAAGTTGATTTTACTCAAGGCGCTGCATTCCTAATATGATCCAATCTTTCCTTGTCCAGGAAGTGACAAGCGAAGTTCTTAGTTCTCTGTCTGTTCTTTTTTATTGGTTGTCCTACGATTAGTCTCGTCAAACATCTACTCCATTCGTCCTATAATATAAAGTTTTAGAGTTGTACACAGTTATTAAGAAGATAGGTAGAAGTGAATGGTGGAGGGTTGTAATTCGAAGAGTAGTGAAGGTAGGTGGGAAAAGTGAATAGTAGAGGGTTGGATTGGTTGGAAAGAGAATGTTGGTGAAGTTGTTATATTTTGGAACAAATCCTGAGGGCTAAAAGTTGTTATATTTTATGACAGAGGGAGTAATATGCTTAAAACTGTCAAAATTAGCATCTATCTATTATCTATCTATCTATTATATACTAAAAGTCCATAAAACTTCCTACAAACACTCCTAAACCGCCACGTGGGAATCCTACAAACACTCCTAAAACGCCACATGTCACTTTAATAAACAACTGGACCCACTATTTTTAATTATTACTATTAGATTTGTTATTTCCACCTCCCTCTCTTATCCCCACAGGCCCATATCCAAGAGTCCCTGCACGTACGTACCAACGTACAAACGTACGTAAAGAAACTACCTACACACTGTTTGCTAAAGGAAAACAAATAAAAAAACTATTCATTAGAAAAAAATAAAAAGAAAAAAAATTATGTATGCACATTTGCACCCACGGTTGGAAAAGAAGCGATCAATCCTTACCTCTTTATTTTCTTTAGTTGTTCACTATTTATAATTTTATAAAGTACTAGCAAACATGCCTATGTGTTGCAACGGGTGAAAAAAACGTAATGATAATATACGTTTTTCATGCATAACCATGTTGATGACAATCAGAAAATTGGAACATCTTAAATGTAATTTAAATGTAATAGCCCAACCTCGATGATGGCAACCTTATGATGCTTGCTTTACTTAAAATAATTGGATTATTCATATGACAACATGCATATAATCTAAAATATTCTTTTAATCTCATTCTTGCAACCAATCAAGTCCTACATTACCTCGTATGATCAAGTCTACACAAAATAGAGTCACTGTCCACTCTTATCTGTATAACAATTAAAATATGTTTATTTCTAAGATTATTTCATATAATATGTTATCAATAACAGTAGCTATACTTCATAAAAATAGTATGATAATTACCTACGAAGATGTGCAGGGTCTCCAATACAGGAGAATAGATGACGAAACAAAAGTCGTGTAGGAGATAGAAAAAAGTCAATGGATCCTATCCGATCAAGTGTCCATCAATTTAGCGTTTCTTTCTAATAGTTTTTTCCACTTATGCTTTTTTTTTTGCTTTTCTATAGACGATGGAAAATTTTTTTTCTCATGTGCTTTTTTACGGACTATGGAACTTTTTTCTAGCGCATTTTCTTTTGCGCTTTTTTTTGACATTTTTTCCTCGCGCGTTTTTTAAACCGTATTTATTTTCTCAGGCATTTATTTCTTTTTTAATATACGGTAGAAGCTTCTCTTTTAAAATAGTTAGATTAGAGATAAAGAAGAGATATAAACGGACTACTAAAACGATGAATAGAAATTAGACATTTTTCCGCCCTTTTTATTTTTTTTGTAGTGCATTTTTTTTACAAACGGTTTTTTTGGCCACTTTCTTATAGTGTCGGACCTTTCTAGATATAAATAGGATTCTATTTTATTTACCGCGTCACATATAATTTCTTTTTATTTGGAATCGGACTTTTTTTTATTTTTTTCACCCTTTTTTTACCGAGTCGACGGAGTAGGATTCGTTTTGATTTTTTTTCCTTTTTTATCGTACATATTTGTTTTTTTCGCCCTTTTTTTATTGGACTTTTTTTATTTTTTTTCCGGTCGTTTATTTCACCGTATCACATATAATTTCTTTTTCTTTGAAATCGGACAATTTTTTTAATTTTTTTCGCCCCTTTTTTTTATCGATTCGTTTCGTTCTTTTTTTCCCCGTATTTTTTTTGGATCGGACAATTTTTTTTGGTTTGTTGGATCGGACATTTTTTTTTTCTCCCGGTTTTTTTCCTCGGTTTTTTTCACCCGGTCTTTTGGTTTTTTTTCGCTCTGTTTTTTGGATCGGTCATTTTTTCTCCCGCTTTTTTTTCTCCTTTTTTGATCTGACTCTTTTTTTCGCCTGGTTTTTTCGCTCGGTTTTCTTCGTCTGGTTTTTTTGACGGACGATGGAAGCATCTCTTATTTTTTAAGTAGTAGAGATAGAGATATAACGTATCTTATCCCTAAAAAATATGACATCCATATTACCTATATTTTAATTAAAAAAGTTGTCATATGGAACTATAGTCTTAATAATTACTTTCTTTGTGTTTAATAACCGACAACTAAATAAGCTCCTAAGCCGTCAAGTAACACTCCAATAAATTAGAGAAAAATCATATAAATTATGAAGAAAAAAATAAAAAACCATCGATTTCCACTTAAATGTGGTCGACCAATTATTTTCTACTGTTACATTTATCTTAGCAATATTTTTGTATGTACATATGTATTGCTTATACCTGGATGATCATAATTATAGATCAATAAACTTTCTACAAATGCTCCTAACCCGCCACGTGACACCCTATAAACACTTTCAAGTCGTCACGTGGCACTCTAATAAAGAAATTCGATCGTCGATTTTCATTTAAATCAATGAACCCATTATTTTAAATCGTGAGATCTATCTTAAGAAAAATCTTCATCTGTTCATGCCTGTGCTGTGTTCTCACGCATGTACCTAACCTACCCTTCCTTCATTCCTTTCTATTTTATTTCCATGATAACTAAAATTATTATTTTTTTCATTATGGGCCTATAAAATTATCAATAGATAGACATCAACCTTCTAGATCGAGCAAGCTCTTCCTCTGTACTCTCTTTATAGTACATTAAACATCATACATGTATTTCTAAATAACTACCTGGCACTCTTAAATTAGAGAAAATCCAAAAGAAAATATTTGACCATTGATTTCTACTTAAATCAGTTTTAGGTTGTTAGATATATCTTTTTTTTAAAAAAATCATTCGAACCTCACTCTGCACCCCTTTGTGATGTCATGACAAATTATTTCGTTAATTAAAGAAAAAAGTATAATATGATAACGTTATATCCACAGTGCAAAAATCTTCTACAAACACATTTGTATATTTTTTATTATTATTGTAAATTTAGTAGAGGGGAGATAATATAGTTGCACAAACACACGACTTTATATAAACGTCTATTAAACTTCCTAGAAACACTTTCAAACCATCATGTGGCATCCTATATACATTCCTAAGACATCTCATGATGCTCTAATAAATTAAAAATTTATATAAATTTTGATATAAGGAAAAATATCACATCCTTGATTTTCACTTGAATTGATGATCCGTTATTTTAGGCTATTGGATTTATTGCATTGAAAGAGAACAGCCAGAACCTCCACCGTTAGATTAGATTGAATTAATTAACCAGAACCTCAAAACTAAAAGAAAAGGAAAAAAATTCTACGATGCACCTGCGGCGGTTGCAGGAGATCACCATCACCGTATCAAGTTTCTCTAATGAGCTACAACTTTATCTTTATGAAGATGGATTTATCCCATTCATACTATGCTGTGCTAAATTGTTCATTGCCTAGAACAAATCAAAGGTTGATATATACTGGAGCATTTATATGTTTTTTTATAAACATAGATTTAGAAGAGTAAAAAATATTTTTTTGAAAAAAAAAATATACATAAACATTCATTACAACATTTCAAACACCACTGAATAAGGTGCCCGTGCATCCGCGCGGGCTACCTTCCTAGTTATCTAAAAGGAGATAATGGACTTTACTCTCAATATATTGGTAGTTTTACTCTTGTCTAGCTAAAGGCAGCAATGTTACCTTTTTTTTTTATTAAATGCTTTGTTTGGAATTTGGCTGCAGCAAACTGGAAAGGAAACTGGAAAGCAGACTGGAAAGAATTGACCAGCGGATTGAGAATCTCAACCATAAAGTGGTCAGCTTTGCTTCTTTGCATATTCTTCGATTTCTGATGCATATTCTTCATTGTTGCCAGTTCTCTGACTCATATATTTGCTTCTTTCCTGAACCAATTGCAGGACCAAATAACACCGTTACGACGTAGCCACTGCAATCACCAGCACCCAATGTAAGAGATCTCCATGCTAGCTTACAAAGATACTAATACATTATGGTATTCAATGTTCTATTTTCTGTGTTACAGGCAGGGGACAAATAATGAAGGGGCCAATGCTGAAGGAGTGGAGACAAATGAAGACGATGACAAAAACACATGTGTTCGGCTTCGATTTCTGAATGAAATGAAACCTCCTATTTACCATGATGATGAGTTAAAAGCTGAGAACAGCGAAGATATTCGGATTGGCATATTTGATGGTGAACAGATGATAAAATCAGGCCCTCTTTCGAAGGTGAAACTTGAGATATTGGCCCTTGAGGGAAATTTTCCGTATAATAGCATGGAGAGTTGGACTACTAAGGAGTTCAACGAACACAGAGCTTGTGGCCGGGATGAAAGAGGCGATGTGTTGGCAGGTGAACGCACTGTCCAGCTGATCAATGGAGAGGCCTCTCTTGGTGCCATCAAATTCAGAGAAGGGTCATGCAAGGCCCGCAAGGGTAAGTTCATCCTTGCAGCAAGAGTTTGTGACAGTGCAAGAACTGGTGTTCATGTTCAAGAGGCTGTCATGACGCCTGTGGTTGTGCAGGATCGCAGAAATAAATGTAGGTTACCGTCTATAACTCTACCATATCTTCTCTTTGGTTAGTAAGGGATAAACATTAGTGCTGATTTCCTTAATTCAAGTATATATGGTCCAGGTCCAAGTTTCATGTGTGAGGGTAACCATACTTCCAATACTGACAATGAATCGTTCCTTACTTGTTTCTTTCTCTTCGTTTTCTCCTTTGCAGCAAATGAAAAGAGTCATCCTCCAAAGCTGGACGACAAGGTTCATCGCTTGGAGGAAATTGCAATTAATGGAATATACTGCAAGAGGCTTGTGGAGAAGGGCATAAAAACTGTGAAAGACTTCTTAAAGGCTCTAAACAAGGATCCTGATAACTTGGCCAATGTACAGTCCCTCTTTAGACATATTTTGTCCAGCCCTCTGTTGATCCCTATTACACCATCTCCATTTCTTGGTGTGTGCAGATTCTCCACATGAAGAAAGGATCCAAGGCCTGGGAGAAAATGGTGACACATGCCAGGGACTGCAGCCTCGAAGGCAAGCCCGAGCTGAAATCGTATCCCGTTGCTCAGACAAACGTGGTGCTCATCTTCGATTGCGTGAATTCTCTTGTTGGGGCATGGTTTGGTGGCAGTTACATTGCATCTGACAGCCTCAGTTCAGCTCAGCAGGTACATGTTTTGGTATCAAACATTGTACATTCCACAATTGCAGCTACCATGTTGAGAACAGTCCTCATCCCAACTTCATGTGCGTATTTGCTTCAGGTCATAGTGGACAAGTTGAAAGGGGAAGCATATCAACTATTAGATCAGCTTCCTTTTGATTATATAATGGAAGGCGGGTTTCCAATACTGAATCCTATGAATGCGAATGCCGATTATCGAGGTTAAAATTTTTGAATAAGACGAGTGGTCAAACATCATATCTAAAAGTCAACAGCATCATATATTTAAATGAGGGAGTAGTTAATTGTGTCCAAACCATGTATTGTACAATGGCCTGATATTGGGATCTGTCTGCCAGCTCAAGGTACTGAAGCAGTTGGGGGCTTGGATCATGCTCAGATTGATCCATCATTTGCAAATGCAAACTATCAAGGTACTCATTCATTCTTGTAAATTCTTTCATAGTGTGCACAAGATGATGCCTTTGGATAACAGTTTTGGTTGTATGGTATCAAAACCTCATAGATCAAAGTACTGCACAAGCTGGTCAGGAGCAATTCTCCTCTGCTGCTGTAGCTGGTTGGTGCCAGGATTCAATTGCGCAACCTAGCTCTTCTCACCAGACAAATCATGTGAGCGAAAAAATTGCGTCATCTCATCTTTGTTCTTAGTGTATTGAACTCCATGCTGCATATTTGTAATGACTTCAATCCAAACAAAATTGCTCAACTATGTTTGGTTACGATTCAACATCAAAATAACCTTAAATATCAATGTACAAATAATTGTTTGGTTACAAGACTAGTAGAGGCTGCATTACTCCTACAAGTTTTAATTTAGTTTAGCAAGTACTCAGTGTGAGCAAATTGTGTGTTTGTTTGCAGGTAGTCTACCCTGGTGGAGCTCAAGTGAATTACAGTCACCAAACTAACTGCGTTGCGCCTTGTGATTACCCATGCCAAGGAGCATCCAGTGAGTGTTAATCAGAGCTGGGGAAAACACTTATCTAGAAGTGTTCATCCTAAATCTTTTAGCTCACTTTTACTATCATCTTTGTTACAGTGGTACCAGGATTTGATCAGGTGGAACTTCAGGGGAGGCCCTTCTTGGGCAGAGATGACTTGGAAGCATCAACTTCTGCTCACAACAATCTGCCATTTCCACCACAGCAGCAGTTTACATTCAGTGGTGAGCAGTGCATCTTCTTCCTCTCATCACCTCTACTTCGCCGCAAAATCGGCGCGACAAGTGGCAGGAGGGTAGGGGTAGCTCTGGTACCTATCTAGCAGCCAAATTTCACTCTGTAGTGATTCTTCTTGATCTCTTGCAGGTGATCCAGGATCATCAGCTCAGGTGAACATGCAGAGCCAGGGGAACTCAAAGCCATCAACTTCTACTACTCAAGGCAATCTTCCAACACAACAGCAATGGTCCCAATCTCAATACCATGGAAACAACTGGGGATAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA037580

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