BGIOSGA037595

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Revision as of 08:41, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA037595| Description = Os12g0562600 protein| Definition = Oryza sativa Indica Group BGIOSGA037595, complete gene.| tag = OS12G0562600| tid ...")
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Gene Name

BGIOSGA037595

Description

Os12g0562600 protein

Definition

Oryza sativa Indica Group BGIOSGA037595, complete gene.

LocusTag

OS12G0562600

Ensembl Transcript ID

BGIOSGA037595-TA

Ensembl Protein ID

BGIOSGA037595-PA

Length

6347

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:18548763..18555109

Sequence Coding Region

18548763..18549070,18549826..18550267,18550381..18551005,18551935..18551975,18552066..18552134
,18552497..18552597,18553140..18553218,18553663..18553761,18553840..18553908
,18554000..18554049,18554133..18554214,18554714..18554808,18554980..18555109

Genome Context

<gbrowseImage1> name=IndicaChromosome12:18548763..18555109 source=RiceIndica12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome12:18548763..18555109 source=RiceIndica12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCTGGCTGCCGCCGCCGCCTGCACCAGCCGCCGCTGCCGGCGAGTCGGCTCTCCGGGGGGTTCGAGGGCGGGGCGCGCGCCTGGGCGCGCGGCTCCGCGTCGTTCCCGCACTCGTCGCCGCTGCAGCGCGAGGGCCGCGCCGCCGCGGCCGCGGGCGGCGGGTTGACGGAGAAGCAGTACACCAGGGTGTTGCAGTCGCTGGGGCAGTCCGTACACATTCTTGACCTCGAAGGGAAGATCATGTACTGGAATCGATCTGCAGAGAAACTGTATGGTTATCCAGCATCAGAAGCACTTGGTCAGGATGGCCTCATGCTGCTGATTGATTCCTGTGATATCAATGTGGTAAATGACATCTTCCGACGCATATCTCTGGGTGAGAGTTGGACCGGAAAGTTTCCAGTTAAGAACAGAGCTGGAGATAGATTTTCAGCTGTTGCCACCAACACTCCTTTTTATGATGAGGATGGCAGTTTGGTGGGCATTGTTTGCGTTTCAAGTGATTTGCGCACAATGGAGGAGATAATCAGTGGCCCTTCAATCTGTGCAAGGCCCCATCCAGAATCTTCTAGGACCTACTGTGAAGCTAGTTGCAGCAACAGCAATCGCAAAGCCAGTTTGTTGAGCAGAAGCCCATTTGACTCTCAGCAACCTTTGCAGTCTACTATAGCCTCCAAGATAACAAATTTGGCTACGAAGGTCACAAATAAAGTTCGTTCTAGAGTCAGGGCAGATGAAAATGGCATTGAGCGGGAAGGTGGTAGCGGTGAGAGTCATTGTTCTGATCGTGATGCCAAGGAGGAGCCAACGTCTAGTGGAACAACTACGCCAAGAGGGGACGCACCACGCGGAGCCTTTGCTACAGAAGAGAGTTCCCCTGGGAAAACTGCCAAAATGAACAGTGATGAATCAGAAGGAAAAGTAGGGTTCCACAGGATCTTGAGTTCAAAGGCAGAGGCACTGCTGAACAAGAAAGGGATATCATGGCCTTGGAAGGGGCGGGATAACGATGGACCTGATGTGAAGAACCAAGCGACCTGGCCGTGGTTGCATGGGGAGCAAGATGGCAGCCAGAATCATCAGAAAATTTCTGATTCTGCCATAACTCAAGATGGTCAAGGTGCTGAATATAACCAACCTAACAAAAATGAGGCATCAGGTTCCTGGTCCTCTTTCAACAATAACAGCACAAGCAGTGCAAGCAGCACGGGTAGTACTAATAGTAGTGCTCTTTACAAAGTAGATCATGAAGCAGATTGTTTGGATTATGAAATCCTGTGGGAAGACCTTGTCATTGGAGAACAAATTGGTCAAGGCTCGTGTGGAACAGTATATCATGCTTTGTGGTATGGCTCGGATGTGGCTGTTAAAGTTTTCTCTAAGCAAGAATATTCAGAAGAAGTGATACAGACCTTCCGACAAGAGGTATCCCTTATGAAGAAACTACGCCATCCTAATATACTTCTCTTCATGGGTGCGGTTACATCTCCACAACGCCTCTGTATCGTAACAGAGTTCCTCCCACGTGGAAGTTTGTTTCGCTTACTTCAAAGGAACAATACCAAGTTGGATTGGAGACGACGTGTTCACATGGCTTTAGATATTGCAAGGGGGATGAACTATCTTCACCATTCCAGCCCACCTATTATTCATCGGGATTTAAAATCATCCAATCTTTTGGTTGATAAGAACTGGACTGTCAAGGTTGCAGATTTTGGTCTTTCACGTCTCAAGCGTGAAACATTCCTGACAACAAAAACTGGAAAAGGAACACCACAATGGATGGCTCCAGAGGTGTTGCGCAATGAGCCTTCTGACGAGAAGTCTGATGTTTATAGTTATGGGGTCATCCTGTGGGAGCTTGTTACTCAGAAGATACCCTGGGAAAATCTTAATTCGATGCAGGTCATTGGTGCAGTTGGTTTCATGAACCACAGGTTGGAGATTCCTAGTGAAACAGATCCTCAGTGGACATCACTTATCCTGAGTTGTTGGGAAACTGACTCACAACTCCGTCCATCGTTCCAACAACTTCTGGAGAGACTTCGAGAGCTGCAAAGGCAGTACAATGTCCAGACTCAGATGCAGCGAAATGCATCCGCTGCTGCAAAAAATAGCAGCATTGAGTAA</cdnaseq>

Protein Sequence

<aaseq>MPXXXXXXXXXXXXXXXXXGAGCRRRLHQPPLPASRLSGGFEGGARAWARGSASFPHSSPLQREGRAAAAAGGGLTEKQYTRVLQSLGQSVHILDLEGKIMYWNRSAEKLYGYPASEALGQDGLMLLIDSCDINVVNDIFRRISLGESWTGKFPVKNRAGDRFSAVATNTPFYDEDGSLVGIVCVSSDLRTMEEIISGPSICARPHPESSRTYCEASCSNSNRKASLLSRSPFDSQQPLQSTIASKITNLATKVTNKVRSRVRADENGIEREGGSGESHCSDRDAKEEPTSSGTTTPRGDAPRGAFATEESSPGKTAKMNSDESEGKVGFHRILSSKAEALLNKKGISWPWKGRDNDGPDVKNQATWPWLHGEQDGSQNHQKISDSAITQDGQGAEYNQPNKNEASGSWSSFNNNSTSSASSTGSTNSSALYKVDHEADCLDYEILWEDLVIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSEEVIQTFRQEVSLMKKLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNNTKLDWRRRVHMALDIARGMNYLHHSSPPIIHRDLKSSNLLVDKNWTVKVADFGLSRLKRETFLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSYGVILWELVTQKIPWENLNSMQVIGAVGFMNHRLEIPSETDPQWTSLILSCWETDSQLRPSFQQLLERLRELQRQYNVQTQMQRNASAAAKNSSIE</aaseq>

Gene Sequence

<dnaseqindica>1..308#1064..1505#1619..2243#3173..3213#3304..3372#3735..3835#4378..4456#4901..4999#5078..5146#5238..5287#5371..5452#5952..6046#6218..6347#ATGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGCTGGCTGCCGCCGCCGCCTGCACCAGCCGCCGCTGCCGGCGAGTCGGCTCTCCGGGGGGTTCGAGGGCGGGGCGCGCGCCTGGGCGCGCGGCTCCGCGTCGTTCCCGCACTCGTCGCCGCTGCAGCGCGAGGGCCGCGCCGCCGCGGCCGCGGGCGGCGGGTTGACGGAGAAGCAGTACACCAGGGTGTTGCAGTCGCTGGGGCAGTCCGTACACATTCTTGACCTCGAAGGGAAGATCATGTACTGGTGAGATTTTCTTCTTGTTGTTCTTTTTTTTTCATAGCATATGCTAAATGTTTGAGGAAATGCCGTGTTTGATGATGTAGGATGATCTAGTGTTGTCGTGTGCTTTAGATGAAGTGACCCGTATATCGGAATGTATCAGCTTGAGATTTAGGCTATTTTATCTCTTTCCAACTTTGAAACAGTACTAACCCCTAGAAGAGACTCTTGATGCATTTTGGTTGTGGTCTCATTTTCACCATGGATGGATTTAACAAGTTTGAGCAGCAGTGCACGCACGTACTTGAAGTAACGAAACCTTACGCGTGTAAGGCTATAGGTTTTTTTTGACTGTGTTGAATCAAATAAATTTTGTAGTGGATGTCTAGATTTTAGTTGCTTTTAGTAATGAGTTTTTGCATTCTTTGAAAGGGAACTTTTACCAGATTGAAGAAGACATTAACTTCGGTAGTACATAGCAAAGCGATAAGGCATGTCGTAAGTTAGTGGATCAAGATCAGTAGTCAAGATTTGAGCTTAACTTGGTAAGCTAACACTGCTTATATGTAGATGTAATTGATATAATATTGTCTGACGCATATTGCTTGTGGATAGAACCATTTAGGAGTACGTTAGAAAAGAAACATAGTTCGATAAGCACATACCTGCTCCTCAACTTTGCGATATAGCATAAGCTTTGGTATTTTCTTGCAGTCTGCAATTGTGCACAGATCTTCTCTTCTCCTTCCTCATTAAACCTTGCATTTACTATGACGCAGGAATCGATCTGCAGAGAAACTGTATGGTTATCCAGCATCAGAAGCACTTGGTCAGGATGGCCTCATGCTGCTGATTGATTCCTGTGATATCAATGTGGTAAATGACATCTTCCGACGCATATCTCTGGGTGAGAGTTGGACCGGAAAGTTTCCAGTTAAGAACAGAGCTGGAGATAGATTTTCAGCTGTTGCCACCAACACTCCTTTTTATGATGAGGATGGCAGTTTGGTGGGCATTGTTTGCGTTTCAAGTGATTTGCGCACAATGGAGGAGATAATCAGTGGCCCTTCAATCTGTGCAAGGCCCCATCCAGAATCTTCTAGGACCTACTGTGAAGCTAGTTGCAGCAACAGCAATCGCAAAGCCAGTTTGTTGAGCAGAAGCCCATTTGACTCTCAGCAACCTTTGCAGTCTACTATAGCCTCCAAGATAACAAATTTGGTGAGTTCTTATTTCTAGCAAACAGCAGATATAAATACGAACTGCAATAAAATATTGTCTATGTTTATTTGTTCCTAGCATATTCCTTTTTGATTTTTAGAATAACAACACAGGCTACGAAGGTCACAAATAAAGTTCGTTCTAGAGTCAGGGCAGATGAAAATGGCATTGAGCGGGAAGGTGGTAGCGGTGAGAGTCATTGTTCTGATCGTGATGCCAAGGAGGAGCCAACGTCTAGTGGAACAACTACGCCAAGAGGGGACGCACCACGCGGAGCCTTTGCTACAGAAGAGAGTTCCCCTGGGAAAACTGCCAAAATGAACAGTGATGAATCAGAAGGAAAAGTAGGGTTCCACAGGATCTTGAGTTCAAAGGCAGAGGCACTGCTGAACAAGAAAGGGATATCATGGCCTTGGAAGGGGCGGGATAACGATGGACCTGATGTGAAGAACCAAGCGACCTGGCCGTGGTTGCATGGGGAGCAAGATGGCAGCCAGAATCATCAGAAAATTTCTGATTCTGCCATAACTCAAGATGGTCAAGGTGCTGAATATAACCAACCTAACAAAAATGAGGCATCAGGTTCCTGGTCCTCTTTCAACAATAACAGCACAAGCAGTGCAAGCAGCACGGGTAGTACTAATAGTAGTGCTCTTTACAAAGTAGATCATGAAGCAGATTGTTTGGATTATGAAATCCTGTGGGAAGACCTTGTCATTGGAGAACAAATTGGTCAAGGTAGTCCATTCTCCTTTTTTGAATGCTTCCTTAAAACCTTTGTGCATACAAGTATTGTATGGGAGTTTTTAAATTTTTTATGCACAGTTTCATTATTTCCATAGTATTTGTCCAAACTTGCCTTTTCTGCATAGAGTTAGTTTAGGATACCTACTATGCTCCCCTCTTCATTTTCTAAATCTATATCTGTTGCATAACCTCTTTTTATCAAGACAACTCTATAATTTATTGCTCGACCTTCTGATATTCTAAATAACGTTATTAGCATTTCTTGGCCTTCGAGATGTGATGTTCACCGTTACTATTTATAGTTCTAACTCATTAGAAATTAGTAAAACCTACAATATTATGGAAATATTATTAGCTACAGTTATGCTCACCATATATGCATATACCCTTACCGTGTAATATCAAATTTATCTACTGTTTTGCTGAATTCTGTTTCTAAGTCCTTAGCTCTAAACCTGAGTAGAACCAAACCATATAGTTGCTTTAACTCCTAATGAGAGCCTAGAGCTTTGGGCTCTTTGGATAGTATCAGTTTTAGTATGTTTTAAAATTTGCAGTCATTTTCTAGCTGACCAATCCCTAGGACTTCAAACATTAGGTAAACTTGCATCCACCAGGTAGGTTGCTCTTGAACTTTTCCAAACATTTGTGTTTGGACGCTTGTAAAGCTTCAAATAAGCTTTGTAGGTTAAGCTACTCTTCCAGGATCTCTCCATGTCTAGCCTAGAAACTCTGGAGCTGAAGCTTTTCTAGTGAAGCTATCGTCTATTCAGTTGCTAAGGCTTAGATGAAATTCAAAAATCTCAAAGGAGTGCAAGCATGACTAAAATCATATGAACGATTAAAATACACACCTGTTTGTAGTGTATTATGCTGAATGCCCTTTTAAATTGTGTCCCTCTCAATTTTGATCTCTGCAGGCTCGTGTGGAACAGTATATCATGCTTTGTGGTATGGCTCGGTATGTTCGATTGTTCCAATGTTTCATGAATAAGTGTTATATGTTTACTTTTGCTATTAATTTCTTCATTTTCTGTGGCATGTTTTGCAGGATGTGGCTGTTAAAGTTTTCTCTAAGCAAGAATATTCAGAAGAAGTGATACAGACCTTCCGACAAGAGGTAGATTTCCATCTCCAGCTACAACATCTGAAAATAAACCTTGTCTCTCTTTCCAGTTGACTTTCTTTCTGTTGTTAAACCTGATTAGCAGTATAATTGTGATGCTTTCTTTTTAGTTTGAGAGGCTTAAAAGAAACTTGAAATGTAAAGCCAATTCAGGTTTTCAGGATGCCCATAAAACCTATCATTGCCATGGTTGCCAAGTATATTGATCTAAGTAAATATAAAAATAACATACTGAAAAAGTTTGAATATATTTGATGATTCTCAAACATGAATATGAAGTGCACGTTTGCTTGAGAAATTGTGACTTTCAGTTTAAATATTCTACTTTTTGAATGTATATTGTTAATCCTGTGAAGGTATCCCTTATGAAGAAACTACGCCATCCTAATATACTTCTCTTCATGGGTGCGGTTACATCTCCACAACGCCTCTGTATCGTAACAGAGTTCCTCCCACGGTATATCCCCTACCTTTTAAAGACAGCTTAGATTTTTGAATTATCTAATTGATTACTATGTGTATGTAGTATTGCTCTCTTGCAAGGCTACCTGCGATTGAGCAGAGCTGCTTGTTTAAATTTGGTTATATCGTTGATTTTGTAATAAGTTATCAAGGAATTAATGTTTAAGGCCCCCCCCCACCCCCCACCCCAACCAGACACACAAAAAAATAATTCAGGATAACATAGGAATCATTATCCCTTTCCCCTTGATAAGCATATTACGATGACAGTGATGGACTAAAGAAATTGAAGCGGGCCACTCTATTATTATGCACCGTGCAGTGTTTGGCCTGGGAACAAAATCTTAGGTTCACTCTTTAGAAATGATTTTTCCAGCTACAGATAGATGTATTGCCTACCATAATAATAAATCAAGACTTCGCTAAAAGTTTTACTTGGATTGGTTCTATTCATATTTTGAATAGCTGATCCTTTTCTTGTACTTACACAATATTTCATCTAGGTCTCATTTTCATCACATTGTTTCTCGAATGCAGTGGAAGTTTGTTTCGCTTACTTCAAAGGAACAATACCAAGTTGGATTGGAGACGACGTGTTCACATGGCTTTAGATATTGTAAGTTCATTTAATTTAATTTGTGAACATAAGTTATATATGGATTTTTGTCATATATCAAGTCAGCAACAGATCCAAGGTTTAGTAAAAGTTGCAGTAAATGATAGGGCAACCAGTGCAACATTCTCTGATCACAGTGTCTAATAATAGATATTGAGTAAAGTTAGAATCTAAAAGTTTTTTTATTGACCGAAAGAATCAAAAGGTGATTGTGCTGCATGAACTTGAAAGTTGAATTGCAACATCGCATGTAAAAAAAAGCCACGTGTCTCAGCAAGTAGTTTTGGGCCAGCTCAGTTTTGCTTCATATTTGAGTGATGAACTTGTTAATCTCTGTATAATTAATATTTTTTTATTATCTTACATTTGTTTGCCATATGTATAATTCTTTAGCAGTTGTTAGTTAGTTTTTTTTTATTTTTTTTTTAAAAAATACTTCTACAGGCAAGGGGGATGAACTATCTTCACCATTCCAGCCCACCTATTATTCATCGGGATTTAAAATCATCCAATCTTTTGGTTGATAAGAACTGGACTGTCAAGGTACAGTGAAGTTAATTTGCATTCCAGGCCTTTTTGCTTTTTTTGCTTGCCGCCTCACATTTTATCCGACTTAATCAGGTTGCAGATTTTGGTCTTTCACGTCTCAAGCGTGAAACATTCCTGACAACAAAAACTGGAAAAGGAACAGTAAGTACCAGCATGCATAATGTGATTAGCAGAAGAGCTTTCCCTTGCAGTTTGCCCTGATTAACTCTATTGATGTTGACTTGATATCCAGCCACAATGGATGGCTCCAGAGGTGTTGCGCAATGAGCCTTCTGACGAGAAGTAAGTTGGGACAGTCCTAATCAATAAAAAATCCTAGTCATGTCTGTAGAAAATGATTACTAATGCTTTCCATTGCTATATAGGTCTGATGTTTATAGTTATGGGGTCATCCTGTGGGAGCTTGTTACTCAGAAGATACCCTGGGAAAATCTTAATTCGATGCAGGTATATTCTTTTGTCTTTAAAACTTATTTTGACCATATGTTTGGTTATAGTTATGACCACTAGATTGTTAAGAGCAATATTTATTTTAGCAGCTTCATGTAATGTAAAAAAATATTTGGATGACAGTTATCATAGAAGTAAGCAATAGAATTAACCATTTTTGTCGGCTACATTGCTTTTCCTTTCATTTTGGTACTACAACATGAGCTAGGGCCTAGGAGATGGTGCATATGGATGTTGAATCAAACTCTTTGAATGTAATGCTGGTATGATTGTTCACCCAGAAATTTGAACTTTGGGCTTACAAGAAACAGTTATTGTCTTTTTGTATTTGTGATTTTGTAGAGACCAGAAATTTCCCAAGATAGTGATATTTTACTGAGTAGCCCAGCATGTTTGCGCGTTGTAACTCTTATTGGGCTAATTCTTTCTTATATCATACTTGTTGTCAAAGTTTTGACTAGGGTCGTATTAATTTGTGAGACTGTTTCTTATGTAGGTCATTGGTGCAGTTGGTTTCATGAACCACAGGTTGGAGATTCCTAGTGAAACAGATCCTCAGTGGACATCACTTATCCTGAGTTGTTGGGAAACGTATGCACTCTTTTTTCCCTTTGCTTTTTACGGTTCATGAAAAGTTACCTTTTTTCTTTATTATGTCTTTTGATGGACTTGAACTTCTCAAACCCTCATCTTCATTGAATGAAGTTGTATTCTCTTGCCTGTTACATTTTCTGATGACAAACATATCCTTGCTGTGAACAGTGACTCACAACTCCGTCCATCGTTCCAACAACTTCTGGAGAGACTTCGAGAGCTGCAAAGGCAGTACAATGTCCAGACTCAGATGCAGCGAAATGCATCCGCTGCTGCAAAAAATAGCAGCATTGAGTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA037595

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