BGIOSGA009591

From RiceWiki
Revision as of 09:03, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA009591| Description = Mitochondrial Rho GTPase| Definition = Oryza sativa Indica Group BGIOSGA009591, complete gene.| tag = OSJNBA0028F23.7...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA009591

Description

Mitochondrial Rho GTPase

Definition

Oryza sativa Indica Group BGIOSGA009591, complete gene.

LocusTag

OSJNBA0028F23.7

Ensembl Transcript ID

BGIOSGA009591-TA

Ensembl Protein ID

BGIOSGA009591-PA

Length

5741

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:38270128..38275868

Sequence Coding Region

38275654..38275868,38275355..38275487,38275117..38275263,38274434..38274610,38274085..38274333
,38273565..38273633,38273372..38273427,38273102..38273183,38272742..38272953
,38272584..38272647,38272082..38272194,38271507..38271657,38270531..38270717
,38270128..38270201

Genome Context

<gbrowseImage1> name=IndicaChromosome03:38270128..38275868 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:38270128..38275868 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGCTGCGGCGACAGCGGCGAACCTGGCCGGCAAGCAGGGCGTGCGGGTCGTCGTCATCGGCGACCCTGGCACCGGCAAGTCCAGCCTCGTCGTCTCCGTCGCCACCGAGGCCTTCCCGGAGAACGTCCCCCGCGTCATGCCGCCCACCCGCCTCCCCGCCGACTACTTCCCCGACCGCGTCCCAATCACCATCGTCGACACCTCCTCCAGCCCGGAGCACAGGGCGAAGCTGATCGCCGAGTGCCAGGCGGCGGACGCGGTGGTGCTCACGTACGCCTGCGATAGGCCTGCTACGCTGGAGCGGCTCAGCACATTCTGGCTCCCCGAGCTCCGCCGCCTCCAGTTAAAGGCACCTGTGATTGTCGTGGGGTGTAAGCTGGACCTTAGGGACGAGCAGCAGGTCAGCCTTGAGCAGGTGATGGCGCCCATCATGCAGACATTCAGAGAGATCGAGACCTGCATTGAGTGCTCTGCGCTTCGCCAGATCCAGGTTCCCGAGGTCTTCTACTATGCCCAGAAGGCGGTGCTTCACCCAACAGCACCTCTATTTGATCAAGAGGCGCAATCTCTAAAGCCACGGTGTGTGAGGGCTTTGAAGCGGATTTTTATTCTATGTGACCATGACAGGGATGGAGCACTCAGTGATGTGGAGCTCAATGACTTTCAGGTCAAATGCTTCAATGCTCCTCTCCAGCCTACTGAAATTGCAGGCGTGAAGAGAGTGGTTCAAGAGAAGATGCCTGAAGGCGTGAATGACAATGGCCTTACCTTGACTGGATTCCTTTTTCTTCATGCTCTTTTTATTGAGAAAGGACGACTAGAAACTACATGGACTGTCCTAAGGAAGTTTGGTTATGATAATGAAATCAAGCTTAGGGATGACCTTATTCCAACAATTAAACGAGCGCCCGATCAAACCCTGGAGTTGACAGGTCAAGCCATTGATTTCTTGAGAGGAATTTTCAATATGTTTGACACAGATAATGATGATGCTTTGCTACCTGCTGAGCTGGATGATCTTTTTTCCACTGCACCTGAAAACCCATGGTCTAATAATCCATATGTGGACTGTGCTGAAAGGAATGTCTTGGGTGGGTTGTCCCTTGAAGGATTTCTCTCCAAGTGGGCTCTTATGACACTTCTAGATCCAGCAAATAGTTTTGCCAACCTTATATATGTTGGCTATTCGGGTGATTTTGGCTCAGCATTTACCACTATGAGGAAAAGACGAGTTGATCGTAAAAAGCAGCAAACGCAACGGAATGTTTTCCAGTGCTATGTTTTTGGTCCCAGGGGTGCTGGAAAGACAGCATTGCTACAATCATTCCTTGGAAGGCAACCTTCTGATGCTCTGCCTATGAATGGTGAACGGTTTGCAGCAAATACTGTTGAACTATCTGGGTCCAGAAAGACACTTGTATTTCGAGAGATTCCTGAAGATGATGTCAGACCATTACTGGCTGATAGGGAATCCTTGGCACCCTGTGATGTAGCAGTATTCGTTTATGATAGCTGTGATGAATTTTCTTGGCAAAGAACAAGGGATTTGCTTGTGGAAGTGGCTACACATGGAGAAAATACTGGCTATGAAGTTCCTTGTCTGATTGTTGCTGCTAAGGATGATCTTGACCAATCTCCATTGGCTCTGCAGGAATCAACGAGAGTGAGCCAAGACATGGGAATCGAAATGCCAATTCCTATTAGCGTGAGGTTGAGAGATTTGAACAATATTTTCTGTAGAATAGTCCATGCTGCGCAGCAGCCTCATCTGAGCATTCCAGAGACTGAAGCTGGGAAAACACGCAGACAATACCGTCAACTTCTGAACCGTTCCCTTATGGTTGTCTCAGTTGGAGCTGCCGTTGCAGTTGTGGGAATAGCTGCTTACCGAGTCTATGCAGCTAGGAAGAACACATCGTCTTGA</cdnaseq>

Protein Sequence

<aaseq>MAAAATAANLAGKQGVRVVVIGDPGTGKSSLVVSVATEAFPENVPRVMPPTRLPADYFPDRVPITIVDTSSSPEHRAKLIAECQAADAVVLTYACDRPATLERLSTFWLPELRRLQLKAPVIVVGCKLDLRDEQQVSLEQVMAPIMQTFREIETCIECSALRQIQVPEVFYYAQKAVLHPTAPLFDQEAQSLKPRCVRALKRIFILCDHDRDGALSDVELNDFQVKCFNAPLQPTEIAGVKRVVQEKMPEGVNDNGLTLTGFLFLHALFIEKGRLETTWTVLRKFGYDNEIKLRDDLIPTIKRAPDQTLELTGQAIDFLRGIFNMFDTDNDDALLPAELDDLFSTAPENPWSNNPYVDCAERNVLGGLSLEGFLSKWALMTLLDPANSFANLIYVGYSGDFGSAFTTMRKRRVDRKKQQTQRNVFQCYVFGPRGAGKTALLQSFLGRQPSDALPMNGERFAANTVELSGSRKTLVFREIPEDDVRPLLADRESLAPCDVAVFVYDSCDEFSWQRTRDLLVEVATHGENTGYEVPCLIVAAKDDLDQSPLALQESTRVSQDMGIEMPIPISVRLRDLNNIFCRIVHAAQQPHLSIPETEAGKTRRQYRQLLNRSLMVVSVGAAVAVVGIAAYRVYAARKNTSS</aaseq>

Gene Sequence

<dnaseqindica>1..215#382..514#606..752#1259..1435#1536..1784#2236..2304#2442..2497#2686..2767#2916..3127#3222..3285#3675..3787#4212..4362#5152..5338#5668..5741#ATGGCGGCTGCGGCGACAGCGGCGAACCTGGCCGGCAAGCAGGGCGTGCGGGTCGTCGTCATCGGCGACCCTGGCACCGGCAAGTCCAGCCTCGTCGTCTCCGTCGCCACCGAGGCCTTCCCGGAGAACGTCCCCCGCGTCATGCCGCCCACCCGCCTCCCCGCCGACTACTTCCCCGACCGCGTCCCAATCACCATCGTCGACACCTCCTCCAGGTCCGCTCACCTCCCTCGCGCTAGATCGCGCCGCGGCCCGCGATGAATCGGGGGTGCTCCCTTAGTCGGTAGATTTGTGGATGGACTCCGTTGCGATTTTGGCCTTGTTCGTCTCGGTGATTGATTCCATTTCTGTGTGGTTGATTCCATTTCTGTGTGGATGCAGCCCGGAGCACAGGGCGAAGCTGATCGCCGAGTGCCAGGCGGCGGACGCGGTGGTGCTCACGTACGCCTGCGATAGGCCTGCTACGCTGGAGCGGCTCAGCACATTCTGGCTCCCCGAGCTCCGCCGCCTCCAGGTTCGTGGCGTAGGATTTGGATCGGTCGTAATGGGTGGTTTCATGGGCGGTCCGATGTGATCTCGTGTTGCTTGCTGTTTGCCTATCACAGTTAAAGGCACCTGTGATTGTCGTGGGGTGTAAGCTGGACCTTAGGGACGAGCAGCAGGTCAGCCTTGAGCAGGTGATGGCGCCCATCATGCAGACATTCAGAGAGATCGAGACCTGCATTGAGTGCTCTGCGCTTCGCCAGATCCAGGTTAAATGCGTGCACTCAATAGTTCTTTGTTGATTACAACTTGTTGGTCAATCTGAATTGGGCATGCTCAAAATACTAGCCCAATTGCCATCCTTTTGTTGATTACAACTTGTTGGTCAATCTGAATTGGGCATGCTCAAAATACTAGCCCAATTGCCATCCTTTTATGGTTGACTACATAGTCCATAACCAGATCCTTATGTTGTTTTATTCTGAAAATAAATTTAGGGCATGTTTATATGATGGGTTATGAGATATGAGATTGGGAAATGGAAATGAGTGGATGGTTAAGATGAAATGTGGTGGCAAAAACTGATGGCTAAGATTGAAAATTATCCTTTGAATGGTGGGATACAATTTCCCAAACCCATAAAAAATGCCCTTAGTTGATCATGCATCTATTGTACTATGCACTTGATAATCTTAATTGGTGCCCTACTAAGATAGAATTCCAGATATTGTGCTAGGTTTGGGTTAACTAGAATATAATTTATGAATGCTTTCAGGTTCCCGAGGTCTTCTACTATGCCCAGAAGGCGGTGCTTCACCCAACAGCACCTCTATTTGATCAAGAGGCGCAATCTCTAAAGCCACGGTGTGTGAGGGCTTTGAAGCGGATTTTTATTCTATGTGACCATGACAGGGATGGAGCACTCAGTGATGTGGAGCTCAATGACTTTCAGGTTTGTATTCACTTAGTCTACCTTGCTTTCTGCTCTAGTGCTTTTTATTGCCATTCTGTTATTTATGGTGTTGATTAGAACCTCTTCTGGTGCTTTATAGGTCAAATGCTTCAATGCTCCTCTCCAGCCTACTGAAATTGCAGGCGTGAAGAGAGTGGTTCAAGAGAAGATGCCTGAAGGCGTGAATGACAATGGCCTTACCTTGACTGGATTCCTTTTTCTTCATGCTCTTTTTATTGAGAAAGGACGACTAGAAACTACATGGACTGTCCTAAGGAAGTTTGGTTATGATAATGAAATCAAGCTTAGGGATGACCTTATTCCAACAATTAAACGAGCGCCCGATCAAGTAATGTGTTGCTCGGTGCTTTTGCTATTCAAATTTTATTTCATGTTGAAGCTAGTTATTTTTATATGTGCTTTTTTGTTATGTATGCTGTTTAGTACCCATGATATGCGAGTTGCTGTTCCTTCATATATTAAAACTGCCTGTCAGATGTTTCTTCAACCATAGTGTTCTCTATAGCATTACTATTCCAGCAAGTGCAGAAATTGCTCTTTTGGTGTTCTGTTTGTTCTTTTGTTTCTTGCAATGTTTGATATCTTCGTTGCTAACATTACTAGGTTACTACTGTAGTAGAATAGCTCTACTCTTAGGAACCACTAAGGCAGTTTCTTGAATTGTTGATTCCAATAGTATGTTGGTTGTTGTTTAACATCAGCAAGCATTTATCTGCGGTATTTATCATACTTACTTTTTATATAAAATTTAGTGTCAATATCAACTTTTCTCCTTACAGACCCTGGAGTTGACAGGTCAAGCCATTGATTTCTTGAGAGGAATTTTCAATATGTTTGACACAGATAATGTAAGTTTAACGCATTGGTGCACAGTTATTTTACTGTAATGTGAATGCTAGTCAACTTCTTTTTTCTGGTAGTTTTATTTTACTGAAAATCATGGTTTTTATTGATCAATTGAAAATGCTTTTTGCATCATGTCTAGGATGATGCTTTGCTACCTGCTGAGCTGGATGATCTTTTTTCCACTGCACCTGAAAAGTAAGTTGATGGAAGGTTCCTGTCCTGTTTTGGGTTGACGCTGTAATGTAAAGTAAATGGTTACCATTATAGAATATCGATAATAAAAAATGTCATGTAACCCTGTATTCATATTTCCTAGAGAATTTAATGGAATGCATTTTATATGCTTGCATTTTCTTACTGATACTCTTTTCTTGATATTTCAGCCCATGGTCTAATAATCCATATGTGGACTGTGCTGAAAGGAATGTCTTGGGTGGGTTGTCCCTTGAAGGATTTCTCTCCAAGGTAGTCTCTCAAACTAAGCATGCTGCTATGCTGATAACACTGTGTCAATTGCAGCGATAGCACTATCTAGAACTAAGCATGCTGCATTGGTGTTAGATTTTCTTATTATACTATCTTCCTTTGTTGATGAACTATTCTGCAATTGCAGTGGGCTCTTATGACACTTCTAGATCCAGCAAATAGTTTTGCCAACCTTATATATGTTGGCTATTCGGGTGATTTTGGCTCAGCATTTACCACTATGAGGAAAAGACGAGTTGATCGTAAAAAGCAGCAAACGCAACGGAATGTTTTCCAGTGCTATGTTTTTGGTCCCAGGGGTGCTGGAAAGACAGCATTGCTACAATCATTCCTTGGAAGGTGCTCTATGCATTTCTTAGTATCTTACACTATGTGCTTTATATCTTTATTACCATGTTTATTTCTTACCATTTGCTTGCGGTCCCTGTTCCAGGCAACCTTCTGATGCTCTGCCTATGAATGGTGAACGGTTTGCAGCAAATACTGTTGAACTATCTGTAAGCGGTTATGAGTTCTTCCAACATATTGAAACATTCTGATAAATTCTCTTATAAGAGTGCAAAATTTGCTTGCTTGCAAATTTAAAAATGTTCTATGATATATTCACTTCGTTCTTTATGAAACATAGTACTGGCCAACATACCATGTGAAAAAAAATATTGCATTTTGATGGCAACAGACAGGAATCTTAATGGCCTATCAGAAATTACTTTCAACGATAGTTTTTTGACAGAAAAAATGTTAGCAGTACTAGTACATCAGTCGCAAACATTGTCATTTCCAATATTAGCATATTTAATTATTCGCAGTTTGGCTATTTATCGTTTGCTATTTATGGGTTATTTTTAAACATTTGGTCTGATTAAATAATTTTATTTTTCTGAAGGGGTCCAGAAAGACACTTGTATTTCGAGAGATTCCTGAAGATGATGTCAGACCATTACTGGCTGATAGGGAATCCTTGGCACCCTGTGATGTAGCAGTATTCGTTTATGATAGGTATGAATTCTGCCAAATTGTTCTATTTATTTATGACCAAGAAATCCTCAGTGCATTGTCTGAAGTAACTGGATTATTTACCTATTAGCTGTAGCAACTCAACTTTTTTATAGACATGGGTTGAATTAGTCTGGACAATGAACTATTTCTACACGCATCATGGTTTTGGAGAGTTGTAAGGACCGATGTTTGTTAGCTCTATTAGCTTTGCTCCAGACAGTTGACAATTCAGGATGATTTTTTTAAATAATATTAAAAAGGTGATAGAAAATATAATGACAGGCAATCTATTATATTTTCTGGAATGAAGCAATCTCAAAAGCTACACACAACAGCAATGTTGCTCTTGTTTCTGGATATATCTTTTTATGCAAATTGTATATAATTTTCTGTACACTAAATGTTATGCCTGTTTAAATGGCAGCTGTGATGAATTTTCTTGGCAAAGAACAAGGGATTTGCTTGTGGAAGTGGCTACACATGGAGAAAATACTGGCTATGAAGTTCCTTGTCTGATTGTTGCTGCTAAGGATGATCTTGACCAATCTCCATTGGCTCTGCAGGAATCAACGAGAGTAAGCTTACTACATGTTCGTTATTGATTTGTCATTTTTACTCTGAAAATCATTTGCCACTGTTCTGTGTCATAGTTGGCACTAAAATATTTGATTTTTCTTGCCCAGACATTTGAATTGGATAACAGGTAGTTTTGGAAGCTGTTTCCCTTTACATTTAGATCACTATTTTATGAATGCCGGAGATATAGTATTACTTACCGCTATGCTTCTACTATTTTTTTCATACACTGTAGTTCTATATTCAAGCAACAATGCATGTTTGATTCTGCTGCCATGCAGCATACTCCCTCCGTCTCAAAAAACAAACCTAGTACAGTAGTACGGGATGTGACACATCCTAGAACGCTGTCCAGATTCGTCGTGTTAGGATGTGTCACATCCTGTACTAGGTTTATTTGTTTTGCGATGGAGGGAGTAACTCCCAATAACAGTGGTGTTGTCCCAAGTCAAGGAACAACAGTTTGGAGAAGAGCTAGGAAATCTTCTAGGATAGAAGTTTTTAGCCTTACTGCAATTATTTCTTATGCAAATCAATTGCAATATGATCTTATAGATTCCTATTGTGCAAATATCTAGTCCTGCTGCAAGAACTTTAAATGGGTGTTTCTTCAGAAATATTTATTGTTACTGGCTTTGTTTTTTAATTTATTGTTACTGGCTTTTTTTTTGTGATGTATGCGCAAGTGATTCTCTCAACTTTGCTTAGCTCACTGTTCTCTGTGCAACTATGGATTACTTTTAGTCGTCTTTCTATGGTTAATTAACAACAAAATTATGTACTTTCAGGTGAGCCAAGACATGGGAATCGAAATGCCAATTCCTATTAGCGTGAGGTTGAGAGATTTGAACAATATTTTCTGTAGAATAGTCCATGCTGCGCAGCAGCCTCATCTGAGCATTCCAGAGACTGAAGCTGGGAAAACACGCAGACAATACCGTCAACTTCTGAACCGTTCCCTTATGGTTGTCTCAGGTAAAGCCAGTTCCACACTCGACAGTCCTGTTGTGTTTACTCTCGTCGCATTTACGCTCTTATACTGCATTGTATTGTACAAATATATTCTATAAATCTATAATAGCAAGAAGTCTGGTATTAGTATAGCAATAGATATACCTGTTCAACAAGGCTACTAGAAAGTTCATGACAATATGAAAGAAGAGGTTTACGTAAAGGTTTATTGTTGTCAGTCTAGCAACATGTGCACAGTCGATCATGATTTTATAAGTTATTTCCAAAACTATAAAATAGTGTAAATTTCCTTCGAGTTCTAACTCAACTGATACTGTACTAATAATTTGCAGTTGGAGCTGCCGTTGCAGTTGTGGGAATAGCTGCTTACCGAGTCTATGCAGCTAGGAAGAACACATCGTCTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA009591