Os12g0238000

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Revision as of 10:26, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0238000| Description = Myb, DNA-binding domain containing protein| Version = NM_001073000.2 GI:297612917 GeneID:4351856| Length = 7602 bp| ...")
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Gene Name

Os12g0238000

Description

Myb, DNA-binding domain containing protein

Version

NM_001073000.2 GI:297612917 GeneID:4351856

Length

7602 bp

Definition

Oryza sativa Japonica Group Os12g0238000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:7611529..7619130

Sequence Coding Region

7611625..7611759,7612092..7612307,7612536..7612620,7613201..7613403,7613966..7615754
,7616353..7616481,7616856..7616959,7617045..7617139,7618133..7618190
,7618756..7618810,7618891..7619021

Expression

GEO Profiles:Os12g0238000

Genome Context

<gbrowseImage1> name=NC_008405:7611529..7619130 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:7611529..7619130 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcttcagtcatgatgacaagcgacaacggaaaggctccagagaagggtggagaagcttctggaccttcatcagctccccaagaaggtgaaatcagcaatgaaccacaaaggcgccggccgctcagtgggaggaccactggtccaacacggcgttccacgaaaggaaattggacccctgaagaggattccatattgtccagagctgttcagacatataaagggaagaattggaaaaaaatagcggaatgttttccggatagaaccgatgtacaatgcttgcacaggtggcaaaaggttctaaaccctgaattggtcaaagggccatggtccaaagaagaagatgacatcattgttcagatggtaaacaaacttggaccaaagaaatggtcaaccattgctcaagctttgcctggacgtataggaaagcaatgtcgggaacggtggcacaaccatcttaaccctggcataaacaaggaggcatggacacaagaagaggaaattaccctcatacatgctcatcgaatgtatggaaataaatgggctgagctgacaaaatttttaccaggaaggacggacaatgcaattaaaaatcactggaacagttcagtaaagaagaaagtcgactcatacatgtcatcaggtttacttacccaagtctcgtgtctccctctaaatgaatactctgcacactgtaattcctcacctgcgttgacccaacaaaacagcgaagacagtggtagctatgctgttcgagaggttgaaaattcatcagtgtgtagtcaatcatcacttgccaaggtttcttgctcccaagtgcacaatgctaatgtggcattgggctgtgatttgcaagtaaatgcgaatgttgacaataatgaagcgcatgattctcaatcttctgtgggtcacgaagcatgctatacttctgtgggggctgttgcaactgctatacctgaggtgcactaccacgtttcttcctctaacttcgatccagatcaacacttgcaagaggagtttgctcaaggattgaatttgcatatgagtatggatgaagtgccaagtaattctagttttgcagacaacccaactatctgtagtatagaaaatcatgaaaggtcattggaaccatatgatgtagcaatggagatgcctctctctatgttaccaagtgattctggagctgagcaaaaactacattttatgtcggaggctgacttcaatagtcctaattgtctgaaatctgaactttggcaggatatttccttgcaaagccttctttctggacctgatgcagttgaaactgattctttttcaagatcaaatcatcaatcggatgtatattcctctcaagcagataatgaatttttagcaccaccctacctattacagacatcaaattcttccagtgtgatggaggctacttatggacagagtccacagatgtcagtaccaccatctcttatctgttcaaatgttatgactgatgtaccttctgataatagatcagaaccaaaagaaatgacagtttctcaggcagaaatggtcacacaatcttccagttcttcaggtgacgctgaaatgtctgctaaccctggtagtagtaatggcagtgatattccttcaatgatggaaaggatacctgaatgtgcggaccaacatgttactaatgcggaagaacctgaagccagtatagagaaagaaccatcggttacaccgagtgctacagcagatgaaaagcaggatgagggagccctattctatgaacctcctcgttttccaagcatggatgttccatttgtcagttgcgaccttgtaacttctggtgatctccaagagtatagtccccttggtattcggcagttaatgcggtcgaccatgaatgtctgcactccaatgagattgtggggctcccctacacatgatgaaagccctgacattttgctgaagagtgctgccaaaagcttcatatgcacaccatcaatactaaagaaacgtcacagagacctcgtgtctcctattccggataaaagaatcgagaagaaatctgggactgaaaaggattgtggggtatcagacacatcctccatcggcattcaaacatgttttattaatgccactaaagatgatgctgttataactaaatcagttttgcgtattgagcgatctgcttcttctaaacctctggaaaagaaacttgagttctctgatgagaacaaggaaaatttggacaacacaattgaacaggcaaaagatggacagagtgcaggaaattacaaacacattgacgagcaggcaaggggggaacggcgtactgcaacaaatataactactacttatgatgatctgccaggcaatttacaacctgcaggtattcttattgagcacaacggtgatgatcttgtttccccagattatggtaaaaacaccatgaaacagaagcaaaacacaaatatggaatctttgtcagtctgtaaggagggagtgtctgctaaaaagcctgcggaacttattgtggagaaatcttcagcatgcataaatgtggattatgaatatgtgaacatattggctgataccccaggcatcaaaagaggactagaatctccttcagcatggaagtccccttggtttgtagatatgcaatttcagggttcatacttcgtcagcccagctaatggaagttacgatgcgctaggattggtgaagcagataaatgtgcagactgctgctgctttggcagaagcccgtgaggtgctggcaagtggtggccaatctgagaacataaattctgataaggaaaacctggagaatccagatgccaagaaggaaccaggagcaacaaccaaattgcaagcaaaaatcaagaccgaggggaaaatcctggatttcaacgaatgtgccacacctataagatcatcagataaaaaagctggcagcagtctgggaagatctttgagctcccctattccttcgtcccatctcctgaaaagttttcgatag</cdnaseq>

Protein Sequence

<aaseq>MSSVMMTSDNGKAPEKGGEASGPSSAPQEGEISNEPQRRRPLSG RTTGPTRRSTKGNWTPEEDSILSRAVQTYKGKNWKKIAECFPDRTDVQCLHRWQKVLN PELVKGPWSKEEDDIIVQMVNKLGPKKWSTIAQALPGRIGKQCRERWHNHLNPGINKE AWTQEEEITLIHAHRMYGNKWAELTKFLPGRTDNAIKNHWNSSVKKKVDSYMSSGLLT QVSCLPLNEYSAHCNSSPALTQQNSEDSGSYAVREVENSSVCSQSSLAKVSCSQVHNA NVALGCDLQVNANVDNNEAHDSQSSVGHEACYTSVGAVATAIPEVHYHVSSSNFDPDQ HLQEEFAQGLNLHMSMDEVPSNSSFADNPTICSIENHERSLEPYDVAMEMPLSMLPSD SGAEQKLHFMSEADFNSPNCLKSELWQDISLQSLLSGPDAVETDSFSRSNHQSDVYSS QADNEFLAPPYLLQTSNSSSVMEATYGQSPQMSVPPSLICSNVMTDVPSDNRSEPKEM TVSQAEMVTQSSSSSGDAEMSANPGSSNGSDIPSMMERIPECADQHVTNAEEPEASIE KEPSVTPSATADEKQDEGALFYEPPRFPSMDVPFVSCDLVTSGDLQEYSPLGIRQLMR STMNVCTPMRLWGSPTHDESPDILLKSAAKSFICTPSILKKRHRDLVSPIPDKRIEKK SGTEKDCGVSDTSSIGIQTCFINATKDDAVITKSVLRIERSASSKPLEKKLEFSDENK ENLDNTIEQAKDGQSAGNYKHIDEQARGERRTATNITTTYDDLPGNLQPAGILIEHNG DDLVSPDYGKNTMKQKQNTNMESLSVCKEGVSAKKPAELIVEKSSACINVDYEYVNIL ADTPGIKRGLESPSAWKSPWFVDMQFQGSYFVSPANGSYDALGLVKQINVQTAAALAE AREVLASGGQSENINSDKENLENPDAKKEPGATTKLQAKIKTEGKILDFNECATPIRS SDKKAGSSLGRSLSSPIPSSHLLKSFR</aaseq>

Gene Sequence

<dnaseqindica>7372..7506#6824..7039#6511..6595#5728..5930#3377..5165#2650..2778#2172..2275#1992..2086#941..998#321..375#110..240#gcctatgatcgcttattccttgaagcaactccctgaaggccttactcaggcttgaccgtataatgatttttatatcccttagaggtttctattgcaaagtgaggattgaatgtcttcagtcatgatgacaagcgacaacggaaaggctccagagaagggtggagaagcttctggaccttcatcagctccccaagaaggtgaaatcagcaatgaaccacaaaggcgccggccgctcagtgggtaaaattctaagctcttctaaccatgctaatgtatattctactaaattttattatgcttctttgtccttgtaactttaggaggaccactggtccaacacggcgttccacgaaaggaaattggacccctgaagaggtataacatgtgaatgtcagcttgtgtttctgttgatgaagagtcctttcatgtacacataattaaatgatgattgaaaaatcttgttttatgtaactgtgaaacatctaatgtgtttactggtaaagactggacttgtttaatatgaaaaaaatatttcacttcatttggtgttttattcctcctacaaacaaagttgaatctgataatttactaatttctctagcatccaagggagccatgggcaactttaactctttaaaagtcaacaaatgcatgtattctgaggcgaatcataaacttcacttttctaccttgggattaccttctttgttctgtttctgtcatatagtcatgtgcaattctgttctagttccatgctttgtacaaaattgtaacagcagcattttggttctattttgtatgtctcaatgaaatgtgagccaagatccatattatcatccacacaatgcaaaatttcaaatttcttagatgcatatttttttttgtgcttattatctacttacactgtttaacgttgcacttatgtgctattcaaatgtaggattccatattgtccagagctgttcagacatataaagggaagaattggaaaaaaataggtacgttctttggattgatgcttatatgtggaaagtcatgcaatgattctatttttctatttgcttagtcctactctttaccttagtccttactcttgcccggcgagtccttactctttatcattgcatttctacaatatcctttagctgtcatacttttctttttctttatcttcaatatagttattttttttatgatggaacatataaacgaaagagccttctaaaatccaatccccacccattgcactatttttttgagagaggaaataacatagggaagcaccttcaaaagtgtgtcctttggtatctacattactctacattttatagcctactccctccgtttcaggttataagacattttgactttggtcaaagtcaaactattttaagtttgactaattttatagaaaaaagtagtaatatttttaacccaagaccaatgtattatgaaaatttattcaattatagatttaatgaaactatgctggcattgtaaatattactacatttttctatagagttagtcaaatttagattagtttgactttgaccaaagtcaaaaagtcttataacctgaaatagagggtgtattatgcatgtctgcttccctttggtttttcttttggtcacatttgctctttgattacatactgttgtacggcaatgcatgtcaggttgtaacaggaacaatatattatttcacaatattatccactatccagggtttacaattcatttttaccatattgttctcaagcctcttttgtcctacaattgtttagtgcagtaggatatcataaaccatgcagcatattttatattttttcttcgatgttatgggaactcgtgtgcaggaaagcattgtgctgtttcattaacttacactcaagtcatgctcttctggcattgtttttcctactttgttgatgagattcttgtatatcgttaaaaatccaagctttgacagagatccttctaattttccagcggaatgttttccggatagaaccgatgtacaatgcttgcacaggtggcaaaaggttctaaaccctgaattggtcaaagggccatggtccaaagaagtaggatgctattccatttattttcatttcttagatagtattgattagtcataatacgctcacaatgacttgttccctttttcaggaagatgacatcattgttcagatggtaaacaaacttggaccaaagaaatggtcaaccattgctcaagctttgcctggacgtataggaaagcaatgtcgggaacggtaatgctatgaaaattacttattcattttattttatttcatctagcttgcactgaagaaaaatgatataacaagaagttttgtggggctcaacagagcaacttctttgtgctagcaacaactgatttcttctagcccgttgttctgctggtgaatgcaggttttctttggacatagttttcgcatagaccatatatgttgtacaatgatgtctggcaaaacatgtgttagattgttaataagatttattttcacaatgcagtattttgtaaactatgctaatttatttcttaatgtgcatgccattatttttaatcgagtatcattactgtggattctacgtcttaaagatggactatctaatctgcatttaggtggcacaaccatcttaaccctggcataaacaaggaggcatggacacaagaagaggaaattaccctcatacatgctcatcgaatgtatggaaataaatgggctgagctgacaaaatttttaccaggaaggtaatgatttttatttttaacctaagagctgtttgcagacctctagttttgatctgatattgtcatgatgactgctattatgggggaaatctttcctctaatttttgttccaaattctatttttttttctgtggtaagttcccaaactgtttagctcagcattctttccaccttcctttcagacatcatttggaatctatggtgttgtataaatttagggaagatggtaacctaaaaaagaaacttaaatcgtttttgctttgggagaatagaatgaggacgcgggtccatacttccaccgaatgtgaaatagagatgccactgcttaactgcaatatcgttcctttattttcagcaagcgaaatttaaaatcaatctgttattttctatgaagtgaaaatagatgcgaaatttatgttttactgccattttgacacatctattgatgtttaacattcttgtcttctctaaatgtttatgacctaatgcacaatgatctatatgtacttctgctcaattaacgcttgttattataaaaatatgccctttttggactactgaaatgattgaacctgtaacattctatttcccttatcaggacggacaatgcaattaaaaatcactggaacagttcagtaaagaagaaagtcgactcatacatgtcatcaggtttacttacccaagtctcgtgtctccctctaaatgaatactctgcacactgtaattcctcacctgcgttgacccaacaaaacagcgaagacagtggtagctatgctgttcgagaggttgaaaattcatcagtgtgtagtcaatcatcacttgccaaggtttcttgctcccaagtgcacaatgctaatgtggcattgggctgtgatttgcaagtaaatgcgaatgttgacaataatgaagcgcatgattctcaatcttctgtgggtcacgaagcatgctatacttctgtgggggctgttgcaactgctatacctgaggtgcactaccacgtttcttcctctaacttcgatccagatcaacacttgcaagaggagtttgctcaaggattgaatttgcatatgagtatggatgaagtgccaagtaattctagttttgcagacaacccaactatctgtagtatagaaaatcatgaaaggtcattggaaccatatgatgtagcaatggagatgcctctctctatgttaccaagtgattctggagctgagcaaaaactacattttatgtcggaggctgacttcaatagtcctaattgtctgaaatctgaactttggcaggatatttccttgcaaagccttctttctggacctgatgcagttgaaactgattctttttcaagatcaaatcatcaatcggatgtatattcctctcaagcagataatgaatttttagcaccaccctacctattacagacatcaaattcttccagtgtgatggaggctacttatggacagagtccacagatgtcagtaccaccatctcttatctgttcaaatgttatgactgatgtaccttctgataatagatcagaaccaaaagaaatgacagtttctcaggcagaaatggtcacacaatcttccagttcttcaggtgacgctgaaatgtctgctaaccctggtagtagtaatggcagtgatattccttcaatgatggaaaggatacctgaatgtgcggaccaacatgttactaatgcggaagaacctgaagccagtatagagaaagaaccatcggttacaccgagtgctacagcagatgaaaagcaggatgagggagccctattctatgaacctcctcgttttccaagcatggatgttccatttgtcagttgcgaccttgtaacttctggtgatctccaagagtatagtccccttggtattcggcagttaatgcggtcgaccatgaatgtctgcactccaatgagattgtggggctcccctacacatgatgaaagccctgacattttgctgaagagtgctgccaaaagcttcatatgcacaccatcaatactaaagaaacgtcacagagacctcgtgtctcctattccggataaaagaatcgagaagaaatctgggactgaaaaggattgtggggtatcagacacatcctccatcggcattcaaacatgttttattaatgccactaaagatgatgctgttataactaaatcagttttgcgtattgagcgatctgcttcttctaaacctctggaaaagaaacttgagttctctgatgagaacaaggaaaatttggacaacacaattgaacaggcaaaagatggacagagtgcaggaaattacaaacacattgacgagcaggcaaggggggaacggcgtactgcaacaaatataactactacttatgatgatctgccaggcaatttagtaagtacttccagtttttgatgatatttagccagttagtatgtgtatcatatttcgttgaggataaaaggtagcacctgtatagtttgtgaggtgaaccaatcagagtgggtccagtaacacaattaaatttagcattaggccagtcccagtgggtgccacataagcaacaaggtatttaatggatgattgaaatatctcttacaatgcattgtttcatttttgctgtttcataggcaatacatgcaagagataagctgtattggaaacgatgtagacagtttcatctagatgacactcatttcatctctcactttattaattctttgccacatgcccacatcatctaaattgttgacatggagccctatttaaatgaaactcccactgggagtggccttatgcatcttcaaataaccaagttaatgccctgagtgtagcaggtgctctttagtctttaacatgttagcatctatgaaatatgggggctgggagactggatcaaaatggaaaatgaatttttccaatgatcttgttcttacctatatgttgtttgatgcagcaacctgcaggtattcttattgagcacaacggtgatgatcttgtttccccagattatggtaaaaacaccatgaaacagaagcaaaacacaaatatggaatctttgtcagtctgtaaggagggagtgtctgctaaaaagcctgcggaacttattgtggagaaatcttcagcatgcataaatgtggattatgaatatgtgaacatgtaagaccactaatttcacatgttcctttgttgttttacagcagattcttttgtatagtaatcttctcaggttacatgaatattaagtcgttaagttttatggaaactgatctctagtgaatgatcatttcctccttttcttgctattgcaagcatcaacctattgaatttgtagtccggcatgcttctgaagacctaaactgtgattagctggttttcatgttcaacctcatgtctctatttagatacttaatccagtacaaaattaagttactacccattcttatctatgtaactgaaatatccattcaagagcttccatcattagtcagaaactgaaaaacattttattatctaatgtattatcataagccttttagccaccatcttactgggattagcacatgctatttcatccagaatgttgaagaacacttgaatcctactgacgaatacatttaagatactacaatagggaattaaactccgcttgtctccaactactgaagtgtgaagagattacttgatccttgttccttttaatatgtaattctgaattctaaagccttgctattgttagattggctgataccccaggcatcaaaagaggactagaatctccttcagcatggaagtccccttggtttgtagatatgcaatttcaggtacatttagcactttgtaaaatttatatatttgaaatgcagagctcaagtgtttggaacaagaatataacttggtggactatggctaaatctaagcggatggaaataaatattattgagtcgtgcctgagagtattttttttcattaattactgatgttgtcacgcactggggatattgcttgctgtttactctgctgaacttcttgtggccatatgttcctcccagggttcatacttcgtcagcccagctaatggaagttacgatgcgctaggattggtgaagcagataaatgtgcagactgctgctgctttggcagaagcccgtgaggtgctggcaagtggtggccaatctgagaacataaattctgataaggaaaacctggagaatccagatgccaagaaggaaccaggagcaacaaccaaattgcaagcaaaaatcaaggtgcgtattgaactgcttattttcatattcccgtgttgttgaaacaaaaggtcttgcgttgtaacaaaaggaggaccctggttttattgtttgtcattttagtagttcctcttgcgttaatattatttagctatgtagctcatgctgtctggcaaatcttggtttgtgagtccaaaacggtggcagttgtttttctgtaatccatcaactgtaaatggttttgatagatttgcatccacgttgagcataaattaacatcattacccattccagactgccagtgtttaactgtattattagcaatgatcataatatgaatgcatattttgcagaccgaggggaaaatcctggatttcaacgaatgtgccacacctataagatcatcagataaaaaagctggcagcagtctgggaagatctttgagctcccctattccttcgtcccatctcctgaaaagttttcgataggtagatatatgaggaatacacctcaggttagctgtaacaatcattatgtgaaactgtgaatcttgttcattaccgtattctttgtgattattaccg</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0238000, RefSeq:Os12g0238000