BGIOSGA010198

From RiceWiki
Revision as of 09:13, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA010198| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA010198, complete gene.| tag = OsI_127...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA010198

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA010198, complete gene.

LocusTag

OsI_12718

Ensembl Transcript ID

BGIOSGA010198-TA

Ensembl Protein ID

BGIOSGA010198-PA

Length

5513

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:28005800..28011312

Sequence Coding Region

28011136..28011312,28010588..28010642,28009666..28009765,28008489..28008819,28007915..28008330
,28007749..28007799,28006982..28007054,28005800..28005973

Genome Context

<gbrowseImage1> name=IndicaChromosome03:28005800..28011312 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:28005800..28011312 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGCAGCCCGCCCCCGCGTCGCCGCCCAAGGCCGACGGCGGCGAGGACGAGGAGGAGGAGTGCTCCAGGGCCGTGGTGAAGGAGGAGCCGCACCACCAGCAGGAGGAGGAGGACGACGATGCGGCTGCGGCTGCGGATGGAGGGGAGGATGAGAAGGAGAAAGTGGAGGAGGAGGCGTTAAGCAGCTCAGATTCACTAACTGTCTTACTGAAAGCTCGGGTGCTCCAGCATGTTTGCAGAAAGTGTATATATGAGAAGTTGAATGATGAGGAGGTAGAATCCTGCCCAGTATGTAAAATTGATCTTGGCTGCACTCCAGTTGAAAAGCTTAGGGCTGATCACAATCTACAAGATGTAAGGTCAAAAATATTTCCATTCAAAAGAAAGAAGATTAGTGCTGACGAAGTAGCAGCTCCTGTTTTACTTCCCAGTAAAAGGAAAGAGAGATCTATCTCTTCTCTGGTAGTTGATACGCCTACAGTAACACCGACAGGTTTGACAGGGCGACGGACAAGAGCAGTTACCAGGAAAGCTGCTGCCTTGCGTGGCCTTGGTCCTGGTATTGATGATCCTGTGAAAAAGGAAATTGATAATGGTGAAAAGCATGCTCAGAATTCAAGCTTGCCCACTAATTTGGGCAAAGTGCCACAAACAAGAAGACAGATGTCATCAAACGCAGAGGCATCGAACCATTCCTCCAATAAAGATACCGAAGGTGATCGCAAGGACCTGGCCGATAAGACTGATGAGCTCTGGAGACCTTTAAATTGTTTGGTAGAAGCTGCAAACAGGACAAAGTCCTCCCGATCAAGTTCACAGAGTCCAATTGTTAAGAGAGAGCAACTTAGTGACTCTCCTGGGAGCACATCTGTTAACAAAACAAAGTCTAGGGAATATATGCAGAAATCCAAAATAGAGGATGATAAGAAAGATGTACCTTTGCTAAAAAGGAAAAACCAAAGGACTGGACGGAGGAGAGAACTTCATGCCCAATCTGATAGTAAGCCTGAAGCTGCAGCTACACAAAACGAAAAGAAATTCAGTTCTATATGGTTTTCACTTGTTGCATCATTTGAACAGGAAGGAGACCCACCTTTACCACAGATACCTTCCCATTATTTGCGAATAAAAGATGGAAACATACCTGCCTCGTCAATCCAGAAGTACCTCATGCAGAAGCTTGGCCTTCCTAACGAGGCAGAGGTCGAAATAAATTGCTGCGGGCAGCCAGTGAACCCTACACAACCCCTGTGCAATTTAGTAGAGGTGTGGTTGAGGGGGCGATCAACACAGACAACACAGACCATGATAGGCTCCCCTGCCAAGGAGTTTGTAATGGTGCTAACTTATGGGCGGCCAAAGGCCATCACGCCATGA</cdnaseq>

Protein Sequence

<aaseq>MQPAPASPPKADGGEDEEEECSRAVVKEEPHHQQEEEDDDAAAAADGGEDEKEKVEEEALSSSDSLTVLLKARVLQHVCRKCIYEKLNDEEVESCPVCKIDLGCTPVEKLRADHNLQDVRSKIFPFKRKKISADEVAAPVLLPSKRKERSISSLVVDTPTVTPTGLTGRRTRAVTRKAAALRGLGPGIDDPVKKEIDNGEKHAQNSSLPTNLGKVPQTRRQMSSNAEASNHSSNKDTEGDRKDLADKTDELWRPLNCLVEAANRTKSSRSSSQSPIVKREQLSDSPGSTSVNKTKSREYMQKSKIEDDKKDVPLLKRKNQRTGRRRELHAQSDSKPEAAATQNEKKFSSIWFSLVASFEQEGDPPLPQIPSHYLRIKDGNIPASSIQKYLMQKLGLPNEAEVEINCCGQPVNPTQPLCNLVEVWLRGRSTQTTQTMIGSPAKEFVMVLTYGRPKAITP</aaseq>

Gene Sequence

<dnaseqindica>1..177#671..725#1548..1647#2494..2824#2983..3398#3514..3564#4259..4331#5340..5513#ATGCAGCCCGCCCCCGCGTCGCCGCCCAAGGCCGACGGCGGCGAGGACGAGGAGGAGGAGTGCTCCAGGGCCGTGGTGAAGGAGGAGCCGCACCACCAGCAGGAGGAGGAGGACGACGATGCGGCTGCGGCTGCGGATGGAGGGGAGGATGAGAAGGAGAAAGTGGAGGAGGAGGCGGTGGAGGAGCGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTCCTACCTTCCTCCCACCACGCCGTCCGTGTTAATTCAATTCAATTGAGCTAGGATCCGGTTTCTCCCACGTCCTCGATTCGGCGCCGTACGTGGGGATTTCGCCGTCGCCGTGGCTCCCGCGCGTTGACGTGTCGCGGCCGGCCGGGGATTTCGCCTTCATGGGAGGATATGCCCTCATGTCATGCCTCTGTGCCTTGCTAGGCGTGACCCGATTTCCAACGTTTCCCGTGTGCTAGCTACCTGCTCCACTTTTCTAGTAACACCGTAACACGCACTCCAGGAGGGGAATGCCGTGTTGTTTCACGTAAATCATTCACCCGTCTCATGGATCGCTGATAGCTCTGCCATTTTTCTTTTTTTTGATTGAGATAGTTAAGCAGCTCAGATTCACTAACTGTCTTACTGAAAGCTCGGGTGCTCCAGCATGGTAATCTACCAAGACTGGGATGAGCTCACTATTCATCTTCGGGAGACAAGGCTGGCCTAAATATGCTACTTTTATGTGGCCCCAAGCAAATGCTAGCGTCTGTTTAAGATTCGGGAGAATGCTGCATGCATTTCCGGGTTGTCGATTTGGAAACATTCTGCTCAAGTAATTAATGTTAGGCTGTCCATTGTATAAAGCAGAGTGAAATGCTACAGTAGCAACTTAACAACCAACGTCATTCACCAACGACACAAGTAGATCCTGGGTTGAATGTTGTTAGTAACTAGTAGTAATTCAAAATCCAGTTGTGCTGCTACTTGCATTCTTTATGAGATAATTTCGGCTCTCAAATTTATACTTTATCCTCCTAATCTACATATGACATGCCCCAATATCTTTGGTAACCGATAGTATATTTTCAGTTGGAGTTGAATTCAGGCAGATGTTACATATCCGCTATTACGCTATTGCCAACTTATTCGTTCCACTTTTAATCAATTGGAACAGTGCTGCTAGCGCACATCTGGTCAGCATAGAATTCGCCTTTTGATATTTTCAGAGTTCATTTGGAAGAACTTTCATTGTTTGGCCTCTTTTTGGGATAACTGTAGTTTTATTAGTGGTTCTTCGGTCTTATGTGCTACCTTTTCTATGGATTCTTGACCCTATCACTAATTTCACAGTTAAGTTTACAACACAATAGTACAAGTAGTGAGAAAACCAGTTATGCGTCTTGACTTAATTTGATAAAAAAAAGGTAAAAAAACACAATATTTGATTGCTCATAGATTCCACAGCTCTAATTTTTTCACCCTGATGCAGTTTGCAGAAAGTGTATATATGAGAAGTTGAATGATGAGGAGGTAGAATCCTGCCCAGTATGTAAAATTGATCTTGGCTGCACTCCAGTTGAAAAGCTTAGGTATGCTTATCATCATGTATATGCACTCAAATTTTATTGAGATTGCTTGTCCCTGTAGCTTGTAAGGTCAAAATAACTGTGTATTTGCACTTCAATTTTGACTGTACTGTTAAATTTCCTGCATCTTCTATTTATTACTCCTATATGATATGACTACCAAGTGGGGCATATTATGAATAGAGCATGTCAACTTGGTACTTTGATTGAGATTTCCTTAATAAACAAAACACTAGGAAGTAATACAGTGGGAAAAAAGTAGAAATGTTACATCCTGAATGCCTTGGTGACTGTTTGTTTAACTCCAAGTAGCTCCCCACTATTTGAGTAAAATATGTACCTCAGGGTTTAAACAGTATCACCTGGGATATTATGGAATCTTAGACACTTTTTAGTTAAGCTCTACGTAATACAGTAAGCAATCATACAGGACTATTTTGTACAGTGTTGATTCTGTTGACTTCAGTTTCATGCTTTTTGTTCTGCAGAATGTAATCTGGAACAGATATTCTGCCTCTTGTAAATTCATATGCTCTAAAGAAGAATTTTGTTTTCCTGCTCTTATTTCTGTAGTTCCTTGTTGAGTGTACTGATCCCAAAGGTTTGCTCTCATTTTACTGTATGGGTACTTTGTAGCCTGTGAAGCCATTGGTACTTGTTTGATGATTTATATTGCATCCTGTGAAATTGCATTGTTAAAGTATTTATCATTGAAAATGCATCTGATTTATATTTTGCATATGTCCTTTAGTTGGAAAATAAATTTGTCGTACTTCTATTCATGTGATTCTGCACTGGTGTTTGTGGCCTACACCTACTTATACTCATTTCTTTATGTTCCAACTTCAGGGCTGATCACAATCTACAAGATGTAAGGTCAAAAATATTTCCATTCAAAAGAAAGAAGATTAGTGCTGACGAAGTAGCAGCTCCTGTTTTACTTCCCAGTAAAAGGAAAGAGAGATCTATCTCTTCTCTGGTAGTTGATACGCCTACAGTAACACCGACAGGTTTGACAGGGCGACGGACAAGAGCAGTTACCAGGAAAGCTGCTGCCTTGCGTGGCCTTGGTCCTGGTATTGATGATCCTGTGAAAAAGGAAATTGATAATGGTGAAAAGCATGCTCAGAATTCAAGCTTGCCCACTAATTTGGGCAAAGTGCCACAAACAAGAAGACAGGTAAACAGACCACACCTTATGGGGTACCATCTCTCATGCACTTTAATGAAAGTTACATTGGACTTGGCTGTGAAATAGTGATACTAATTACTAAGTTTTCAAACTACAATAGCTAGAAGAATGCACATGCCAGCAAAAATTGATCCTGTTGTATGCAGATGTCATCAAACGCAGAGGCATCGAACCATTCCTCCAATAAAGATACCGAAGGTGATCGCAAGGACCTGGCCGATAAGACTGATGAGCTCTGGAGACCTTTAAATTGTTTGGTAGAAGCTGCAAACAGGACAAAGTCCTCCCGATCAAGTTCACAGAGTCCAATTGTTAAGAGAGAGCAACTTAGTGACTCTCCTGGGAGCACATCTGTTAACAAAACAAAGTCTAGGGAATATATGCAGAAATCCAAAATAGAGGATGATAAGAAAGATGTACCTTTGCTAAAAAGGAAAAACCAAAGGACTGGACGGAGGAGAGAACTTCATGCCCAATCTGATAGTAAGCCTGAAGCTGCAGCTACACAAAACGAAAAGAAATTCAGTTCTATATGGTTTTCACTTGTTGCATCATTTGAACAGTAAGAATTGGCGATTCATCGTAATATAACTTTGGTTTAATATTTAGGGAAAAAAAGAATTGCTGCCATGAACTTTTATCTGATCCTGTTCCTTTTTTTTCCTGATTATTTTCAGGGAAGGAGACCCACCTTTACCACAGATACCTTCCCATTATTTGCGAATAAAGTGAGCTCCCATCTTTCCCAGCGTTTCCTTAAGGTTTATGAAAATTATAGTTTAATCTGTACATGGCCTTCATATAGATCTTGTTTGGATTTATCACACTGGACTGTCAGTAGATATGTTATGATAACAACACCAATATCCAAGAAAGAAAATGCATTAGGGAGGAACAAAAGAAAGAGATACTTACATGATTTGTAATGACTAGGTGCAAGCTGATAATATAAAAGAAAATTCTTTGCATACTTGAGCTGATTGGAGATAGAAGTCACTTGGTTAGTTTCAGTGTAAATTATTGTGAATGAGGACTTTGATCTTCCACTGATACTTGACCCTGATTCAAGAGGCAGCAGAGCCGAGGTCTGACATTTGGCAACATGTGTGTTTCCAGCTTCTGCACTTCTCTGCTAGTCTGTTAGCTACAATCTTGGTGTTGATAAACTGTTTCTTTAACTACAAATATCGTGCTAAAATTCGAGTCTAATTAATTTTTAGTTGGAAAATATATTTTGCTCACAAACTTCTGCTAGGTGCTAGACAGTGTGGCTGCATTCAAGAGTTGGAAGATATGCTGGTCTATAGTAGTGTTGTATGATGCAGATTCAGTTGTATAACATCTAGGTCATTATATTATTTTGCGACTTGATATTAGCTGGCAGATCTGATTATGGCTATTCCACACTGTGTTTTACAATAGAGATGGAAACATACCTGCCTCGTCAATCCAGAAGTACCTCATGCAGAAGCTTGGCCTTCCTAACGAGGCAGAGGTAAGAGCTATATCTGCCTCGCATTTTTTTTTAGATTACTGTCATGTGTGACTGGTATTGAAGTAGATCTTTTGGACACTCTTGTGCTCATCTGGACACGGCAGGCTGCAGATTTGCTTCATTTCTGCTCTAGTTTCTGTTATGGGCCTCTTTTCGCAATTTGAGCTACAAATTATGCTTATCAGAATCCATGTCATGTTGATGATGGGTCAATTTAATTCATAAGACCATAACTTCCAGTTTGCTGTGTATTTGTTTTTCCAAAACTGTCATTTTCCTATTTTCTTTAATCGTCCCCAGACTGTATATCATTTTTTAGATAATGGAAACTTTTATTGAACTCAGTCAATTACATCAAGGTGATACAATTATCTTGAGAACACTTCCGGCCTCTGCATAACTAAGATGCACACAGCTAAACATACAAAACCACACTCAAAAGGAAAAAAGAATGACATGGAGTATTGAGGACCATCAATCCAAAGACTAAATTGCCACCCATGAACAACTCCTTGGCCATTTCCTCCAAAAGCATAAGAGCCACCAATCCTAAGACTAGATCGCCATCCATATCCTTGGGTAAAAAACTCCTTGACCACCTTCTCCAAATGTAGACATGCCGCAACCACCATTCCCACGAACCATATCCAGACTGCATATCATGATACTAATTGTTACTCCCTCCGTTTCATACTGTAAGACTTTCTAACATTGCCCATATTCATATAAATGTTAATGAATCTAGATATATATGTCTAGATTCATTAACATTTATATGAATATGGGCAATGCTAGAAAGTCTTATATTGTGAAACGGAGAAAGTACTATATATTTTCCTCTCCCCATAGTAGAATACCTCGGAGCATTTTTAACTTCCTGAAAAGATTCACACCTATAAACATCGCTGTACTTGTCGCAACATTTTCTTTATCATGGAACTTGTTTTACTTAGTAGTGAAGATCCACTGTAAGGTCATCTGAAAATATCGACTTGTCTGGATTTACAGGTCGAAATAAATTGCTGCGGGCAGCCAGTGAACCCTACACAACCCCTGTGCAATTTAGTAGAGGTGTGGTTGAGGGGGCGATCAACACAGACAACACAGACCATGATAGGCTCCCCTGCCAAGGAGTTTGTAATGGTGCTAACTTATGGGCGGCCAAAGGCCATCACGCCATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA010198