Os12g0261300

From RiceWiki
Revision as of 10:26, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0261300| Description = Armadillo-like helical domain containing protein| Version = NM_001073052.1 GI:115488065 GeneID:4351919| Length = 297...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0261300

Description

Armadillo-like helical domain containing protein

Version

NM_001073052.1 GI:115488065 GeneID:4351919

Length

2976 bp

Definition

Oryza sativa Japonica Group Os12g0261300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:9178749..9181724

Sequence Coding Region

9178810..9180366,9180510..9181199

Expression

GEO Profiles:Os12g0261300

Genome Context

<gbrowseImage1> name=NC_008405:9178749..9181724 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:9178749..9181724 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctagtgaaggtggagaaaggctccttctgcaggatggaaggggtacggctaatgctggcgcgcgttttgctggttctccagctggtggtgctggtggtgatcctctcccctctcgcggtgttctacctgttcggcctcctcatcaccgccggcctctcgctgtggcgcttgctgcagcgcgactacggcgccggcgaggaggcggccaacctcgcgccggcgctcaacgtgctctactcgctggcgctcgtccagggcgccctcttcttctactacttcacctcgcgcctcctcgggaggcggctggcgaacttggtcgccggagtttacagcttcggcggcgagggggaggaggaggatgacggcgggcgcacgtcggtggtggagtacatgcggcagacgaggaacggatgcgagaaggacccgtcgtcggtgagagggaggaacctcgtcacgttcgccgtgacgatgatgaaggagtcgtcgtcgtcgtcgctgtcgtccggcgactactcctccggggctaggatcctcgacaagctcctgtcacaggcctggctgcgggagcagcacgagctcatcaggcagctcgtcgggtcgtccaccgacctgatggacaagctgctgcagacgctccggtgcacggggacccgcgaccgcggcgttcgggagcacgccgcgaggatcgtggcgcacctcgccggcgagatcacgctcgccaggttcccgcaagggatccggtgcatatactcgctgctcaccaccccgagaaaccagcagcaagacgacgacaacgacgacgacgacgacgacagcgcccagtcctccgatcactacaagaagctcatggtgcagggcctcgtcatcctccacaagctagccgccgcggagcacaaccggcggatcatcatcaacagcacccagggacggcagctgctctccatggccatggcgcccgtcagcgccgacctgctccaccgcatcgaccacgaagcgtggaacgacatcgtcgcctgctcgctgcagctcatgtgccggctcgtcaccgcccccggcgagaccggcgacaagctgcgttcccaggtgctgaacgacaaggacgccatcggcaccatggagaggatcctcaactgcgacggatgcaacgagaagaggctctatattctcgccattaacatcctcacgcagcttcccatggcggcgaagaacaaggtggtggacgaggcttcgagcatgagcgtcgagagcagaaggaaattcaccaagctacttctactcatctataccgacgaagagaaggacgcctttatgagacaaatggcaggtgaagcattggcaatgctgtccgaacgaagcaagagcgacgccacaatcatcttgaaagcaagtgacagcactctcaaggacctcaccgcaatgctcttggatgtaaatagcaacagaggatacagaatatgtgcagctgaaatcctggagcatctgtacattcgatacaccaagcaagatggctatctcaacaatctgacggaagccatgaaagatgtgttgccaaaggtgctcggagaaatttttcttgtgtcatggacgcataaagaaaagcaaccaggaatgacagaacaaggaacagagggagttaatttctcggcacaaaaagctgacattgaaagtcaagatcccgttgcttgtcaacatgaaaaggttaaagaggaaaacgaaaaggttaaagaggaaaatgaaaaagttaaagagcaagatgaaaaggttaaagagcaaactgtggatatgaaactttatgcagctttactgtcacttagtgaggcaatatttcaaagattggtcaatgatgataaagatttggctgaactgactgataaaattgccccaggaggaggcactgcatttagcttcgccggaaagctcaaggagatggtagaaggaaacagtgaacaagcaacagccaattgcctgagaatgctgaagattactaccaggatgatcatatcattgataaatctcaatggagccaaagtcggagcagacctggagagcttgatgcattctctgttaaaagcttcagaaaagatgttggaactggagggcttcatgattttctctagcagcgatcgtaccgaaagcacgaatcctgccaacattctcgcttccctcgtgaaagaagcacaggagcttctggagaagaagaggcaggcacaaactacacccgctccatcaatggagaccagctga</cdnaseq>

Protein Sequence

<aaseq>MLVKVEKGSFCRMEGVRLMLARVLLVLQLVVLVVILSPLAVFYL FGLLITAGLSLWRLLQRDYGAGEEAANLAPALNVLYSLALVQGALFFYYFTSRLLGRR LANLVAGVYSFGGEGEEEDDGGRTSVVEYMRQTRNGCEKDPSSVRGRNLVTFAVTMMK ESSSSSLSSGDYSSGARILDKLLSQAWLREQHELIRQLVGSSTDLMDKLLQTLRCTGT RDRGVREHAARIVAHLAGEITLARFPQGIRCIYSLLTTPRNQQQDDDNDDDDDDSAQS SDHYKKLMVQGLVILHKLAAAEHNRRIIINSTQGRQLLSMAMAPVSADLLHRIDHEAW NDIVACSLQLMCRLVTAPGETGDKLRSQVLNDKDAIGTMERILNCDGCNEKRLYILAI NILTQLPMAAKNKVVDEASSMSVESRRKFTKLLLLIYTDEEKDAFMRQMAGEALAMLS ERSKSDATIILKASDSTLKDLTAMLLDVNSNRGYRICAAEILEHLYIRYTKQDGYLNN LTEAMKDVLPKVLGEIFLVSWTHKEKQPGMTEQGTEGVNFSAQKADIESQDPVACQHE KVKEENEKVKEENEKVKEQDEKVKEQTVDMKLYAALLSLSEAIFQRLVNDDKDLAELT DKIAPGGGTAFSFAGKLKEMVEGNSEQATANCLRMLKITTRMIISLINLNGAKVGADL ESLMHSLLKASEKMLELEGFMIFSSSDRTESTNPANILASLVKEAQELLEKKRQAQTT PAPSMETS</aaseq>

Gene Sequence

<dnaseqindica>62..1618#1762..2451#gaacgaaaagctgacctactttcggaaatccttcttcggcctggtgggtaccatatcagcgatgctagtgaaggtggagaaaggctccttctgcaggatggaaggggtacggctaatgctggcgcgcgttttgctggttctccagctggtggtgctggtggtgatcctctcccctctcgcggtgttctacctgttcggcctcctcatcaccgccggcctctcgctgtggcgcttgctgcagcgcgactacggcgccggcgaggaggcggccaacctcgcgccggcgctcaacgtgctctactcgctggcgctcgtccagggcgccctcttcttctactacttcacctcgcgcctcctcgggaggcggctggcgaacttggtcgccggagtttacagcttcggcggcgagggggaggaggaggatgacggcgggcgcacgtcggtggtggagtacatgcggcagacgaggaacggatgcgagaaggacccgtcgtcggtgagagggaggaacctcgtcacgttcgccgtgacgatgatgaaggagtcgtcgtcgtcgtcgctgtcgtccggcgactactcctccggggctaggatcctcgacaagctcctgtcacaggcctggctgcgggagcagcacgagctcatcaggcagctcgtcgggtcgtccaccgacctgatggacaagctgctgcagacgctccggtgcacggggacccgcgaccgcggcgttcgggagcacgccgcgaggatcgtggcgcacctcgccggcgagatcacgctcgccaggttcccgcaagggatccggtgcatatactcgctgctcaccaccccgagaaaccagcagcaagacgacgacaacgacgacgacgacgacgacagcgcccagtcctccgatcactacaagaagctcatggtgcagggcctcgtcatcctccacaagctagccgccgcggagcacaaccggcggatcatcatcaacagcacccagggacggcagctgctctccatggccatggcgcccgtcagcgccgacctgctccaccgcatcgaccacgaagcgtggaacgacatcgtcgcctgctcgctgcagctcatgtgccggctcgtcaccgcccccggcgagaccggcgacaagctgcgttcccaggtgctgaacgacaaggacgccatcggcaccatggagaggatcctcaactgcgacggatgcaacgagaagaggctctatattctcgccattaacatcctcacgcagcttcccatggcggcgaagaacaaggtggtggacgaggcttcgagcatgagcgtcgagagcagaaggaaattcaccaagctacttctactcatctataccgacgaagagaaggacgcctttatgagacaaatggcaggtgaagcattggcaatgctgtccgaacgaagcaagagcgacgccacaatcatcttgaaagcaagtgacagcactctcaaggacctcaccgcaatgctcttggatgtaaatagcaacagaggatacagaatatgtgcagctgaaatcctggagcatctgtacattcgatacaccaagcaagatggctatctcaacaatctgacggaagccatgaaagatgtgttgccaaaggtgatcaatatcgaataaatgaatatattatttagtttgtttcatgttgattaactaataagagcaatgtctgtaacaatatatatatatatatatatatatatatatatatatatatatatatatcttgctgttcgtttcaggtgctcggagaaatttttcttgtgtcatggacgcataaagaaaagcaaccaggaatgacagaacaaggaacagagggagttaatttctcggcacaaaaagctgacattgaaagtcaagatcccgttgcttgtcaacatgaaaaggttaaagaggaaaacgaaaaggttaaagaggaaaatgaaaaagttaaagagcaagatgaaaaggttaaagagcaaactgtggatatgaaactttatgcagctttactgtcacttagtgaggcaatatttcaaagattggtcaatgatgataaagatttggctgaactgactgataaaattgccccaggaggaggcactgcatttagcttcgccggaaagctcaaggagatggtagaaggaaacagtgaacaagcaacagccaattgcctgagaatgctgaagattactaccaggatgatcatatcattgataaatctcaatggagccaaagtcggagcagacctggagagcttgatgcattctctgttaaaagcttcagaaaagatgttggaactggagggcttcatgattttctctagcagcgatcgtaccgaaagcacgaatcctgccaacattctcgcttccctcgtgaaagaagcacaggagcttctggagaagaagaggcaggcacaaactacacccgctccatcaatggagaccagctgattgagtaaacagactatcaacacgatcgtatgctgatctgcagactgttggcagtaatacctggaaactgacaccgtacaatccctgaaaactgtctctgtaatctgtatgtgtgctgaaacttatctatcttgtcaattgtcccatctatttcaaaaactttcaagttgaactttacaacaaactgttgagctttattggcagttcgtataatatcctcttggaacagtagataaaacctatctgaagaggtgaagaggccaaggatctgcatcaacctactgcacattcagtacttgctcacctatgttaggggtgaaacaactattacataattcgggtattttgtatgcattttaaaacaagttggataatcagagacaccaattctgatgtactcgtctaataaatttatccaggacttcggacggaactcagcccatctgaagtattcagttagtttgttaggctttgttagatagggttgttagtcaattagaatcaatcaatcaagaaagttaaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0261300, RefSeq:Os12g0261300