Os12g0263100

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Revision as of 10:26, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0263100| Description = Similar to Zinc finger, DHHC domain containing 4| Version = NM_001073056.1 GI:115488073 GeneID:4351924| Length = 281...")
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Gene Name

Os12g0263100

Description

Similar to Zinc finger, DHHC domain containing 4

Version

NM_001073056.1 GI:115488073 GeneID:4351924

Length

2819 bp

Definition

Oryza sativa Japonica Group Os12g0263100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:9273241..9276059

Sequence Coding Region

9273367..9273849,9273940..9274104,9274197..9274277,9274389..9274517,9274632..9274703
,9274800..9274868,9275185..9275556,9275632..9275745,9275831..9275929

Expression

GEO Profiles:Os12g0263100

Genome Context

<gbrowseImage1> name=NC_008405:9273241..9276059 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:9273241..9276059 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcagcggcgaatccacggcggcggcggcggcgacgatggcgtggccgcgctggcgccgccgccacggctggcagctccccctccaccctctccagctggtgggcatggcggtgttcgccgtcctcgtcgccgcgttctacgtcgtcctcgggccgtacctcggcagcaccgtcgcggggaacaccctcctcgccctcttctcctcctcggcggcgggcgcggcggcgctctacgtgcggtgcacggcggtggacccgtcggaccggacgcacgcgaagaagatgaagaggcggcggcagctggcgagggcccgcgcaggccgccgcggcggcggaggaggggggaggttgccgaggctgaggtacgggtacatcctgtggcggtacgtcgtgcggctgctccggcgggtggaggtccgcgtgatgaaccggtgggtgcggcggagctacctcgagcagtggaactccagcgtccagctcgaccccatgctccccttcgccttcaccagcctcgacgacatcgtctcgccgcacgccgccgccggccacgacatctcctactgccccgtctgtgattgcgaggtgaaattgcgcagcaagcactgcaagacctgtgatcgctgtgttgatggatttgatcaccactgcaggtggctgaacaattgcattggaagaaggaactatgcatcatttattctgctcatgttctttgtcctgctcatgcttgttattgagggaggaacagcaatcgcgatcttcgttcgctgctttaccgacagcaaagggttgaaaatggaaatggaacacaggcttcacatcaggctcccaaaaggagcacatgcagcgttatcaatggtttttgtgatcttcaccttatacagtactgtagcactgggtcagctcttcttcttccatgttgtgcttattagaaagggaatgaggacatatgattacatccttgctatgagagaagcagcacaagcatttgaccctttcgatgactctgattcgtcgtctgatgagagtatcgacttcgattcaccagaaaggccatcctttctgtcaaggatcttctgcagaaaagatgaattaagtgaaagtacccgaaagctatccatcaggattgaaaatgagcccagtgatggaacaagaaggaaagatgacatccagatcaacccatggacgttgatcaagatgagcaaggagaaggctatggcagccgctgagcgtgcccgtgagcgaatcaggaacaagctgccatcaacaacaacctcaccgatgaaaccattaccggtggagacaaagagaggtcctctgaaccaagagagaaagcacatcatgacagggaaggagattgttcctgttttcaccaagagctggttgtcaggatccccgacagcaaggctgtcaagcccaagaagacgattctccggttcaccatctccgaaaccacagagacaccggagcaacttcgatctgagacttgcagaggtgtcaagagagcttgagtcccacatctcaaagcaggttctttgctccgttgtcatgaagggtgttgaagatgaagattctccatcctga</cdnaseq>

Protein Sequence

<aaseq>MGSGESTAAAAATMAWPRWRRRHGWQLPLHPLQLVGMAVFAVLV AAFYVVLGPYLGSTVAGNTLLALFSSSAAGAAALYVRCTAVDPSDRTHAKKMKRRRQL ARARAGRRGGGGGGRLPRLRYGYILWRYVVRLLRRVEVRVMNRWVRRSYLEQWNSSVQ LDPMLPFAFTSLDDIVSPHAAAGHDISYCPVCDCEVKLRSKHCKTCDRCVDGFDHHCR WLNNCIGRRNYASFILLMFFVLLMLVIEGGTAIAIFVRCFTDSKGLKMEMEHRLHIRL PKGAHAALSMVFVIFTLYSTVALGQLFFFHVVLIRKGMRTYDYILAMREAAQAFDPFD DSDSSSDESIDFDSPERPSFLSRIFCRKDELSESTRKLSIRIENEPSDGTRRKDDIQI NPWTLIKMSKEKAMAAAERARERIRNKLPSTTTSPMKPLPVETKRGPLNQERKHIMTG KEIVPVFTKSWLSGSPTARLSSPRRRFSGSPSPKPQRHRSNFDLRLAEVSRELESHIS KQVLCSVVMKGVEDEDSPS</aaseq>

Gene Sequence

<dnaseqindica>2211..2693#1956..2120#1783..1863#1543..1671#1357..1428#1192..1260#504..875#315..428#131..229#ggctgcctcccctaccccacctgtcagacaaccccaccgccgcttcgcttcactctcgcgttcgagtcacacagcagcagagttgaacgacgcgtccgcatcgagccgcagatctttctcaccgccaccgatgggcagcggcgaatccacggcggcggcggcggcgacgatggcgtggccgcgctggcgccgccgccacggctggcagctccccctccaccctctccaggtccccccgccgcttctctcccacctttcttccccccggattggattctttgaggtgacggtgtgtggttggatatgcgatgcagctggtgggcatggcggtgttcgccgtcctcgtcgccgcgttctacgtcgtcctcgggccgtacctcggcagcaccgtcgcggggaacaccctcctcgccctcttctcctcctcggtacggtaaccttcttggctggcttctcctcgcgtcgcgttgttggttgctgacggtgacgggatcaaacaccaggcggcgggcgcggcggcgctctacgtgcggtgcacggcggtggacccgtcggaccggacgcacgcgaagaagatgaagaggcggcggcagctggcgagggcccgcgcaggccgccgcggcggcggaggaggggggaggttgccgaggctgaggtacgggtacatcctgtggcggtacgtcgtgcggctgctccggcgggtggaggtccgcgtgatgaaccggtgggtgcggcggagctacctcgagcagtggaactccagcgtccagctcgaccccatgctccccttcgccttcaccagcctcgacgacatcgtctcgccgcacgccgccgccggccacgacatctcctactgccccgtctgtgattgcgaggtccactgctctgttcctctcctttgctctatgggccttcattgctctgcttgtttgattcaaaacttcaaataaatataattcaggaaatggagcttaatttttttgatgtgggtagattgattcacctaaatttcattgctctgtttgattggttctgataaataattcaaaaaatgtgggtagattagtttatgagaatagaagaggataaattcaactgaatttcaacgtttttggtttgtgaaattcattaatgtggagtcagtcagaggtcaagatgaaacaatctgaaacgattatgtacgaattgcaggtgaaattgcgcagcaagcactgcaagacctgtgatcgctgtgttgatggatttgatcaccactgcagggtaagcacccaagctatgtgcattcttttcactcccaaatcaatggttgatctttcaatgatcaagtgactgagtttttctatctttttcacacagtggctgaacaattgcattggaagaaggaactatgcatcatttattctgctcatgttctttgtcctgctcatggtgggtgctaaatgccaatattttttgtctctcggcttgcatcatttttctttctatgtccaagaaatcatttcttttactacaactaaatagcatgcaaatcttctgtatcagcttgttattgagggaggaacagcaatcgcgatcttcgttcgctgctttaccgacagcaaagggttgaaaatggaaatggaacacaggcttcacatcaggctcccaaaaggagcacatgcagcgttatcagtatgtaaccaagaagaacatatcatctctctcaataagcaattaggcacgcatcattactgctgtacaatactcataaggctacattgttcattatgatattctgggcagatggtttttgtgatcttcaccttatacagtactgtagcactgggtcagctcttcttcttccatgttgtgcttattagaaaggtgtgcactttgctgaacaaatacttttgtgcaggataaagatgatataaatcatgtcagctaattttttttgtgaactgttgttacttcagggaatgaggacatatgattacatccttgctatgagagaagcagcacaagcatttgaccctttcgatgactctgattcgtcgtctgatgagagtatcgacttcgattcaccagaaaggccatcctttctgtcaaggatcttctgcagaaaagatgaattaagtgaagtaagtacatacaaattgcagcactaggccagtagtactagtttcagttaatctaacttggtgatgacaataccatttcatacatgacagagtacccgaaagctatccatcaggattgaaaatgagcccagtgatggaacaagaaggaaagatgacatccagatcaacccatggacgttgatcaagatgagcaaggagaaggctatggcagccgctgagcgtgcccgtgagcgaatcaggaacaagctgccatcaacaacaacctcaccgatgaaaccattaccggtggagacaaagagaggtcctctgaaccaagagagaaagcacatcatgacagggaaggagattgttcctgttttcaccaagagctggttgtcaggatccccgacagcaaggctgtcaagcccaagaagacgattctccggttcaccatctccgaaaccacagagacaccggagcaacttcgatctgagacttgcagaggtgtcaagagagcttgagtcccacatctcaaagcaggttctttgctccgttgtcatgaagggtgttgaagatgaagattctccatcctgatgcgggacgttgtttacttcaacaagattcatttcatttttgtgtctctcaatctctgagaattgtgtgatgtgcttgcttagcccatgcaacccttttctcaggttcattcatgctgctctacat</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0263100, RefSeq:Os12g0263100