Os12g0271700

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Revision as of 10:27, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0271700| Description = Similar to Solanesyl diphosphate synthase 1| Version = NM_001073084.1 GI:115488129 GeneID:4351957| Length = 7036 bp|...")
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Gene Name

Os12g0271700

Description

Similar to Solanesyl diphosphate synthase 1

Version

NM_001073084.1 GI:115488129 GeneID:4351957

Length

7036 bp

Definition

Oryza sativa Japonica Group Os12g0271700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:9914411..9921446

Sequence Coding Region

9914821..9915369,9915451..9915578,9915989..9916092,9919874..9920001,9921139..9921281
,9921378..9921444

Expression

GEO Profiles:Os12g0271700

Genome Context

<gbrowseImage1> name=NC_008405:9914411..9921446 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:9914411..9921446 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ggacgcgcggcgccgccgacgcggcgcgcgccaggtgtttgctccgtggtctcgcccagcaagccaggtgttgctgctgttgacgtgccggccgcgacgattcctgacgcggcggcgaccggcgtcggcgtcgccgagcgcatttcggtgtcgtcgctgctggaggttgtggcggacgacttgctcaagcttaacaacaacctcaaatcgcttgttggtgcagaaaatccagttttagtttctgcggctgaacaaatatttggtgccggtggaaaaagattaagaccggcactagtttttctggtatccagagcaactgctgaattggctggtttattggaactaactacagaacaccaacgtttggcagagatcatagagatgatccacactgcaagtttaatacatgacgacgtcatagatgatagtgggatgcgaagagggaaggaaactattcatcagctatatggaacacgggtggctgtacttgctggtgattttatgtttgcacaatcttcttggtttcttgcaaaccttgaaaatattgaagttataaagctcatcagtcaggtaatcaaggattttgccagtggtgaaataaaacaagcatcaacactttttgactgtgacatcacccttgatgattacctgctcaagagctactacaagactgcttctctgattgcagcaagcacaaggtcagctgccatatttagtggtgtcagcactgctatatgtgaacaaatgtatgaatacggaaggaatctcggtctctccttccaggtagtcgatgacattcttgacttcacccaatcagctgaacaacttgggaaacctgcaggaagtgacctggcaaagggtaatctaacagccccggtcattttcgctttgcaagatgaaccacagctcagggagatcattgattccgagttcagtgaaacaaattccttggctactgcaatagagctagttcatagaagtggtggaataaagagggctcatgagcttgcaagagagaagggtgaaatagctatccaaagtctgcagtgtcttccaaggagtgagttcagaagcactcttgagaacatggtgaaatataatctagaaaggattgattag</cdnaseq>

Protein Sequence

<aaseq>GRAAPPTRRAPGVCSVVSPSKPGVAAVDVPAATIPDAAATGVGV AERISVSSLLEVVADDLLKLNNNLKSLVGAENPVLVSAAEQIFGAGGKRLRPALVFLV SRATAELAGLLELTTEHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRV AVLAGDFMFAQSSWFLANLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLL KSYYKTASLIAASTRSAAIFSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQL GKPAGSDLAKGNLTAPVIFALQDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAH ELAREKGEIAIQSLQCLPRSEFRSTLENMVKYNLERID</aaseq>

Gene Sequence

<dnaseqindica>6078..6626#5869..5996#5355..5458#1446..1573#166..308#3..69#tcggacgcgcggcgccgccgacgcggcgcgcgccaggtgtttgctccgtggtctcgcccagcaagccaggttctctctctgcggctcctctgctggtttgccttgctctcggcggcggcggtgttgggcgggtgaggctgagcagttgggtgtgctttggtgtaggtgttgctgctgttgacgtgccggccgcgacgattcctgacgcggcggcgaccggcgtcggcgtcgccgagcgcatttcggtgtcgtcgctgctggaggttgtggcggacgacttgctcaagcttaacaacaacctcaaatcggtgagcttcaccttttcctcccaaagtttgcatcattctgttcagcttgttcatgatacaagtatgattgaatagcttctctttctcctagcacatttggtacaaggctcacggttgctacgacatagtccaatacaaaaaaaaaaaaagttgcactgattttgcttggaaatgtatcgaactgtgacagtttttagtccataaattttagaataaaaaaaatttgcacttagtgataaagttgtggacaatttaagtacttggttggttggctggttgaacaatatgttaatggttgtaacttctggaaaaataaaatgtattcttagttccttgcgttcgtcgagggaaattaatgtgcaacgaaggttgaaagggaaagaaatatgcccatcatttgcagtgttactggaatatactgcaggagcgagtaaacagtgcagagtcgcataatggtccattccttttgaactaactaatgaccccagttatcgaggaatggaggcttgggaagtttttttggataatggatagaaatctggcctctatatctctaaatggatataccagtgtttacaattcggttcgaaatttcggaccccaccggcaatcaatatactgaccgaaattttcgggttttctcaattttttgtggaatttggtcaaagttttttcaaatccagtcaaaatctttcaaaatttctggaaagtgccgaaaatcacgaaattaaatttcggtcctaccgaaatcaccgaaatcgaaattgtaaaccctgggatatacacagccaaagaggcttgggaagttgggagtcagaagtagactgaatgagcaaatgccttatagtagctcttatgtagtgcttttgcacactcaataacttcttccatgtttgctattttatgcaacttctctataattgctgagctttgacatgttttctgctcttgagtagtgacattgcacaatactatcatttttccaatccttcctctatagatcatcaatgtctgcttaagcaagacatcaaacatcacagaatgacatatcaaatactagtacctaaacttttttcaagaggaaattgtacttatgtacgttcttgttacaataactagctgacataattttaatagcttgttggtgcagaaaatccagttttagtttctgcggctgaacaaatatttggtgccggtggaaaaagattaagaccggcactagtttttctggtatccagagcaactgctgaattggctggtttattgtaagttccttttggctgcattatcattgatgtgagtaggtttgtgtcacgcccggaaattcactagtaatttccgaacttatttgtgcataaaatcctcgtccaggaatcagccgaggtacacaaactgacaatttaatatacagattcatcaacaactaaagcaaataaatacttacttaagaggcacttagtcctcatcatgaagaaagctgcagcggaaaaataaaatctagcgaagctccgactccactcccacaggcagctcaactgggtataagccaaacgtcttctccttctggatcctttttcttcaactgaggtttgattgattattgcaagaatgagcatatgacatactcaacaagccacacagcaaatatgcaagtgcacaaggataccaaaggatggcataatataggctcatttgcaaaagcagcatttagcaaaacatttaagagaaacaaaacagtggagtaattaatcagaaattttaatcaacactgaacagcacacccatgctgcacaggcccaaccatcctgaacaaccatacccggctgtacagatctaactccaaaccaggagctaagcaaattattaccagttattacatccataattattgtgagaggtgtgagactaatcacgaaaaacattgctcaactcgcccataaccgcgggcacggctattcgaatagttttactctggccagaggtgtaccactgtacccacaagacacaacctcaacatcatgtctaccatgcgtcgcgatactggaaagtacccgaatagaggctgtgacattatcccctgcataacacaactcaccacggtgcaccattcctggatcataatcaccccctctacaaccagaggcatggactccccagcgacccccatggacttctcgccacttcacagtctggcacactataataaatcatgctatacaagagataaagccggtgcccacgctggcttgtggttggcacggaaaatgtttcacaacagtagctcgcgaaccggtccttaattgtcatgagcacaaccatcaaaaccatatgctcacaacccaccttaaccaggttttaattatcaattaattatcatcacacgattaaccatcgtgagctaccattaaatgtaaccataattaataagaataatgtaacatagtttataattaatccctttagttaggctaatgtttctaagcatagctaagcaaacttacatatagcatttagctgaaccaatccaatatataaggttcaagctaatcaatttattacccaaggtatcaaggaatagggcattcaatgcaaattggccataacaaaggaataggttcacaccacccgatgacattcgaaaataaatgcacagttgaaataaatagagaatttaaatataggatcaacatgctcaaaggattgtgtttaggatctgtgtgacttgccttgcaataatcagtcttcaattaatcttcttgatcacttccgacgcactcacgaaccttcgcaacgacggaaacgacaagctaacacgcaaaacgaagaaaaagactaataaaaaccaaataaacagtacataaaaagtaaacaaacatgtagatcataattttagatgaattatgagacttgaacggcctcattctgacttcaaatgaatttattatgaattttacaagatcaaatctaattaaagcccatttaaaaaaaactaaataaatttaattcaatttatggacaattttaatatgtagatctttattttagaaaaatttggcaacttgaaccacctaaaacggatctacggttatttagttatgattttccaaagatttaaactattagaaaaaaaagaaaaaaggaaaaggaaaaagggacgatgacgtcagcatgacgtcacccacgatcggccgattagggttagcaagctcgccggagataggggccttggccggggaaaaggagggcacctacgcgtagagggcatcgagacgaacccgatggtactcaccaaagcgcccaacgacaaccgacgacggccggcgacgacgcaagaggcggcggcggctcgggttggacggcgacggcgaactccggtggtcggcagcgaagggggacgggcggccgaggttcctcacctccttgcgcacctaacggcggcgacggatggcaacggcgacgactaccgtggcggcgcgacgcggctggaaggtcgccggcgacggcagcggctagggcaacgtggcggcaacgctacgggcgacgagagagctcgggacttggggcaaacggtagaggacgactaggggatgctatttatagcattggattagagagatcggactccaaacgagaggaatcgatccaagataatcaaaactcggttttggagataaactcgaaaacgaatttgattcgggcaagatactcaaccatttgctccgattcttgagggaaaagatagaggagtatgtgaggataaaatcccctcaaaaatcccgaagaaaaagagtcggattggagcagatttgagaggagaagaaggcggctcgggctcggcatctcggccggcttgggctcggccggaggtggaagacacacccgacaggtgggtcccacctgtcggcggctgaggggaggagagggcgggcggcgtcggctgggccggcttgggccggttcggccgcgcggggaagagaagagttgggccgaaaacggcccaacggcttaggaagggatttttaaaactttttcaattaaaataattcgtgaaatgatgtttcatttattaaaaatacttcccttgctcaaataattcccagaaaaatctagaaaatagaggagcaagcatagtatttaataaaattttatctagttcaattttatattgagatttagcaaattaaaaaaaagatcttctcttttaaacttttaaaattatttctaataattccttttaaacaacaatttataatttaaggatttttaaacaagaaaaactcttaaaaattataattagatcatttaatgattattttaatatttaaataattgctgaacttctctttgtatgattaaaattaacaattgagctccgaaaaatccgagaaaattccagagagtataattaaccatggagaatttaataaaaattaaatccatccatgctttgtatttaggaaattttattttccacatttaacttcacttgtaaattaatgaacatttaatataaattctattaataatttattaaataatttataaatcctgaaacgaaaatcagggtgtgacagtttggaatagagtgcactatctcataggtccctaaaccataacatgtgtgttatttaagtcaccgaattacagaaatgcaaattggcttctatccaacccaaacttaataagttaccaatgttcaggcagcactttaaccctgctaaatcaagtttgactaaagaatttctaccaaagtaaataaaaatcttagtgacgtgtgaaattttccttcgaattgcaaaatattaatatctattgatttcaattggaaaacaaaactatgatttggactaagggtgtcacatgtcatttctaattaccataaaatggcatatggtactttgttaacccatttatacaaatcccaggacatgaatgtgcagttctcaagttcaagcacctaggtgacaccacacaagtttagacacctatcatatactttagtcttttaaaattattccctcaagatctttgatttttggattacagggaactaactacagaacaccaacgtttggcagagatcatagagatgatccacactgcaagtttaatacatgacgacgtcatagatgatagtgggatgcgaagaggtacgtattatgttgtttttatggaaggccagcagtactggcagtaataaccattctctcttagccaacagaactgtcaacaaaaaccgatctttgttatttcatttttgtgacacatgtgcctaccgtttattcttcttagaatactctcctgcatattcttagaaatacattgtctgaattttgcctccatgcattcatctagtttgaaaacaaaaaatgctgtcgttgcattacagaaactgttctgtttcgctctaaaagaaaaaaacgaaactgttttgttatttgttttcgttatttatatggcaatcctgtttgattttacttaactcctttctattgtcattgtgaaataggggactcaagaaatttacctgtttaatctgaggtacatttattatttttagggaaggaaactattcatcagctatatggaacacgggtggctgtacttgctggtgattttatgtttgcacaatcttcttggtttcttgcaaaccttgaaaatattgaagttataaagctcatcagtcaggtaatgaagagtttgagcaagtttttgtgccttatttaaaactatgcatgatttgcatccagaaaggtgcttctttaacaggtaatcaaggattttgccagtggtgaaataaaacaagcatcaacactttttgactgtgacatcacccttgatgattacctgctcaagagctactacaagactgcttctctgattgcagcaagcacaaggtcagctgccatatttagtggtgtcagcactgctatatgtgaacaaatgtatgaatacggaaggaatctcggtctctccttccaggtagtcgatgacattcttgacttcacccaatcagctgaacaacttgggaaacctgcaggaagtgacctggcaaagggtaatctaacagccccggtcattttcgctttgcaagatgaaccacagctcagggagatcattgattccgagttcagtgaaacaaattccttggctactgcaatagagctagttcatagaagtggtggaataaagagggctcatgagcttgcaagagagaagggtgaaatagctatccaaagtctgcagtgtcttccaaggagtgagttcagaagcactcttgagaacatggtgaaatataatctagaaaggattgattaggcagctttacttatttcacaatcggatacagaacctcctttgtgagcttacagtagctccccaaaaaggcaaactttttaaggttttgggccctgtttggatcagtggattgccaatggaaaataagggaaaatgacattattttcttacaaaatgatcctgtggaattctcacgaaacagaccatttggttatgtgagatgaatgatgcaggacaaaatcatcggaaagcagcgaccttgccaggttcctcccaccttgcgcctacatgtatcctagcattttatttttgcacgtcttgtaaataaaagaagtatattgacattagcattctttagttttgcaattttcacatgcatatagaaaacacgttgtgtgtacttgtatgggcacctcacctgacaggctctc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0271700, RefSeq:Os12g0271700