BGIOSGA010904

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Revision as of 09:23, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA010904| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA010904, complete gene.| tag = OsI_111...")
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Gene Name

BGIOSGA010904

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA010904, complete gene.

LocusTag

OsI_11198

Ensembl Transcript ID

BGIOSGA010904-TA

Ensembl Protein ID

BGIOSGA010904-PA

Length

5623

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:11695670..11701292

Sequence Coding Region

11701172..11701292,11700808..11701043,11700622..11700768,11700222..11700464,11700061..11700132
,11699862..11699930,11699676..11699732,11699371..11699481,11699205..11699286
,11699018..11699113,11698729..11698902,11698545..11698651,11698255..11698419
,11697960..11698096,11697618..11697871,11697361..11697524,11697088..11697276
,11696418..11696914,11695670..11695802

Genome Context

<gbrowseImage1> name=IndicaChromosome03:11695670..11701292 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:11695670..11701292 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGAGGCGGCGGCGCTCTTCTCGCTCTCCGCGGCCGCCGTGGTGGAGGACGTGCTGCGGCAGCACGGGTGCCGCCTCAGCGACCGCGACCTCGCCTCCCGCAGGGCGGAGGAAGCCGCGGCGAGGCGGAACGAGGCGGCGGGGTGGCTGCGCCGCACGGTGGGGGCGGTGGCCGCGCGCGACCTGCCGGAGGAGCCGTCGGAGGAGGAGTTCCGGCTCGGCCTCCGCAACGGCCAGATCCTCTGCGGCGCGCTCAACAGGGTCCACCCGGGCGCCGTCCCCAAGGCATGCGCACACGTTGTGTTCGTTAATTTGATTCGCTCCCGCTGCGCTGTTTGCCACTGTAGCGTGATGGTGGTGGTGAACACGGCGGCGGACTCCGTGCTGCAGCCGGACGGCGCGGCGCTGTCGGCGTTCCAGTACTTCGAGAACGTGCGCAACTTCCTCGTGGCGGCGCAGGAGATCGGCCTGCCGTGTTTCGAGGCCTCCGATTTGGAGCAGGGAGGGAAGAGCGCCAGGGTGGTGAACTGCGTACTGGCATTGAAGTCGTACGGTGACTGGAAACAATGTGGTGGCACCGGGCCATGGAAATACGGGGGGAATTTGAAGCCGTCGGCTTCCGGCAAGTCGTTCGTGAGGAAGAACTCCGAGCCATTCCGGAGGTGCCAATCGATGAACGAGGGCGAGGTGCCTTACGAGGAGGCTGGATTCAGCGGTGATTATCATCTTGATTCCGGTGACATGTCGACGTCACGCCCTTTGAAAATGTTGGTTAGTGCAGTTTTGTCCGACAAGAGGCCCGACGAAGTTCCACAGCTCTTGGAGTCCATGCTGAGTAAACTCGTCGAGGAATTCGAGAATCGATTGACTAGCCAACATGAATTGGTGAAGGCGGCTCTGAAAAATGGTACAGATGGCACCAAATCCTTCTCGAAATCAAAGATGGATACGATAGAGGTTTACTCCAAACATAGACAAACCAAAAAGGAAGCATATGGAGAAGTTACACTGAAGCAATATTCAATGCTACAACTACAGTCAAAGCATGTTGAGGAACTCAAGGCGGATATTAGAGCTACAAAAGCTGGCATGGAGTTTATGCAAATGAAGTACTCCGAGGACATCAACATCTTAGGAAGGCATCTGTTTAGCCTTGCACATGCTGCCTCAGGTTATCATATAGTTCTTGAAGAAAATCGCAAGCTGTACAACCAAGTGCAAGATCTTAAAGGGAGTATCAGGGTATATTGTAGAGTACGACCCTTTTTACCTGGACAAGTAAGTTCTTGTGCTGTGGGTTCAATTGATGAGGGCAATATAACCATCATCACTCCTTCCAAGTCTGGAAAGGAAGGCCGAAAGACTTTTAGCTTCAACAAGGTGTTTGGCCCTTCAGCAACACAAGATGAGGTGTTCTTAGATACCCAGCCCCTTATTCGCTCAGTACTTGATGGATACAACGTTTGCATCTTTGCTTATGGCCAGACCGGTTCAGGGAAGACATATACAATGAGTGGGCCCAAGAACATGACTGAGCAAACCCAGGGTGTAAATTATCGGGCACTAAGTGATCTATTTAAGCTTGCCGAACAAAGGAAAGGAGCATTCATTTATGATATTGCTGTGCAAATGATAGAGATTTATAATGAGCAAGTCAGGACCTCCTTGTCAATGATGAATGGACTTAATGTGCCGGATGCAAGCCTTGTCCGTGTCGCATCAACAATGGACGTGATGGAATTGATGAATGTTGGGCAGAAGAACCGTGCAGTCGGCGCCACTGCACTAAATGACCGGAGCAGTCGTTCCCACAGTTGCTTAACTGTACATGTTCAAGGAAGAGATTTGACATCAGGGACCATTCTTCGTGGCTGCATGCACTTAGTTGATCTCGCAGGCAGTGAGCGGGTTGATAAGTCAGAGGTCACTGGAGAAAGGTTAAAAGAAGCACAACATATAAACAAATCATTGTCGGCTTTAGGGGATGTGATTGCTTCACTTGCCCAAAAGAGTGCGCATGTACCTTACAGGAATAGTAAATTAACACAACTCCTGCAAGATTCTCTTGGAGGTCAGGCCAAAACCTTGATGTTTGTTCATATAAGCCCAGAGAGTGATGCTTTAGGAGAAAGCATAAGCACATTGAAGTTTGCCGAGCGTGTATCCACTGTTGAACTTGGCGCTGCTCGGTTGAACAAAGAGTCTGGAGAAGTTAAAGAACTTAAGGAGCAGATTGCTCGACTCAAATCATCATTAGCAATGAAAGATTCAGGATCAGAGCAAAACATTAACCGTGACCCTGAGGCATTTAACATGAAGATGCCTTCACCTGGCTTTTCAAATAGGCGACAGGGTAGTTGTGAGTTGGTGTCTAGCCAAACTAACTTCAGACAACCAATGGAGGACGTTGGAAACATAGAGGTTAGAGCCAATCCAACATTAAGACAGAAGAAACCAAGCTTTGATCTCCAGGACTTATTAGCGTCAAATGATTCCCCATCATGGCCAGATAGCATTTCAAGGGCAAATTTTCAAATGGGAGAAGAAAGAGAGACTATTGGTGGGGAATGGATCGATAAGGTTGTAGTGAACAACAATAACTCAGTAGGTGATTGGGAAGGCGACAGTGCAGCTTTACCTGACTTCTTTTACCAAAGGTACCATTCAGGTACAAGAGATAAGCAATACCTGAGAAATAACTCAAGAAAAAAGGACGGAAATGAGTTTGAGCAGCAAAGACCAAGATTTTATTCCACAAATACTGATGATTCTGATGACATTGACATTGCAACAAGTGATTCCTCAGAATCAGATGCACTATGGCAGTTCAATGTCCAAAGCATCAATAGTTCAATTAGCGAGAATGGTTCAAAGATCAAGAAACCACAAACGAAGCTAAGAGAGAGCTCAGATACCAGGACACCACTCCATTCTCAAATACCATCTGCTTCGAGGAAAACCTCCAATGGAAATAGATCTGGACGGCAACCTTTAAGTGGTAGCGATAGCAGAAGGCTCTCATCAAATGGTAGACATGCTGGTACAAAGTAG</cdnaseq>

Protein Sequence

<aaseq>MAEAAALFSLSAAAVVEDVLRQHGCRLSDRDLASRRAEEAAARRNEAAGWLRRTVGAVAARDLPEEPSEEEFRLGLRNGQILCGALNRVHPGAVPKACAHVVFVNLIRSRCAVCHCSVMVVVNTAADSVLQPDGAALSAFQYFENVRNFLVAAQEIGLPCFEASDLEQGGKSARVVNCVLALKSYGDWKQCGGTGPWKYGGNLKPSASGKSFVRKNSEPFRRCQSMNEGEVPYEEAGFSGDYHLDSGDMSTSRPLKMLVSAVLSDKRPDEVPQLLESMLSKLVEEFENRLTSQHELVKAALKNGTDGTKSFSKSKMDTIEVYSKHRQTKKEAYGEVTLKQYSMLQLQSKHVEELKADIRATKAGMEFMQMKYSEDINILGRHLFSLAHAASGYHIVLEENRKLYNQVQDLKGSIRVYCRVRPFLPGQVSSCAVGSIDEGNITIITPSKSGKEGRKTFSFNKVFGPSATQDEVFLDTQPLIRSVLDGYNVCIFAYGQTGSGKTYTMSGPKNMTEQTQGVNYRALSDLFKLAEQRKGAFIYDIAVQMIEIYNEQVRTSLSMMNGLNVPDASLVRVASTMDVMELMNVGQKNRAVGATALNDRSSRSHSCLTVHVQGRDLTSGTILRGCMHLVDLAGSERVDKSEVTGERLKEAQHINKSLSALGDVIASLAQKSAHVPYRNSKLTQLLQDSLGGQAKTLMFVHISPESDALGESISTLKFAERVSTVELGAARLNKESGEVKELKEQIARLKSSLAMKDSGSEQNINRDPEAFNMKMPSPGFSNRRQGSCELVSSQTNFRQPMEDVGNIEVRANPTLRQKKPSFDLQDLLASNDSPSWPDSISRANFQMGEERETIGGEWIDKVVVNNNNSVGDWEGDSAALPDFFYQRYHSGTRDKQYLRNNSRKKDGNEFEQQRPRFYSTNTDDSDDIDIATSDSSESDALWQFNVQSINSSISENGSKIKKPQTKLRESSDTRTPLHSQIPSASRKTSNGNRSGRQPLSGSDSRRLSSNGRHAGTK</aaseq>

Gene Sequence

<dnaseqindica>1..121#250..485#525..671#829..1071#1161..1232#1363..1431#1561..1617#1812..1922#2007..2088#2180..2275#2391..2564#2642..2748#2874..3038#3197..3333#3422..3675#3769..3932#4017..4205#4379..4875#5491..5623#ATGGCGGAGGCGGCGGCGCTCTTCTCGCTCTCCGCGGCCGCCGTGGTGGAGGACGTGCTGCGGCAGCACGGGTGCCGCCTCAGCGACCGCGACCTCGCCTCCCGCAGGGCGGAGGAAGCCGGTGCGTGTGTCGTGTCGTGTCGTGTCGCTTCGCGTGTTCTGCGTGGAATCGTGGTGGTCTTTTGCCAATTTGCCACCCGCTATCGGCTGGCTTCGCTCGCTCACGCGACATTGTTTGGTTCCGTGCAGCGGCGAGGCGGAACGAGGCGGCGGGGTGGCTGCGCCGCACGGTGGGGGCGGTGGCCGCGCGCGACCTGCCGGAGGAGCCGTCGGAGGAGGAGTTCCGGCTCGGCCTCCGCAACGGCCAGATCCTCTGCGGCGCGCTCAACAGGGTCCACCCGGGCGCCGTCCCCAAGGCATGCGCACACGTTGTGTTCGTTAATTTGATTCGCTCCCGCTGCGCTGTTTGCCACTGTAGCGTGATGGTTGGTTGCTGTGATGTTGCGCGCGCGCGCGCCCCGCAGGTGGTGGTGAACACGGCGGCGGACTCCGTGCTGCAGCCGGACGGCGCGGCGCTGTCGGCGTTCCAGTACTTCGAGAACGTGCGCAACTTCCTCGTGGCGGCGCAGGAGATCGGCCTGCCGTGTTTCGAGGCCTCCGATTTGGAGCAGGTTCGTGTCGGAGCGCGCCACCCGGCCCCCATGCGCCGTTGCTTGCAGCTGCAGCAAAGCGGCCATCACCCTCATCGTCGATTGCTTTAGGCACACTCTCTTGTGGAGCCTGTGATTTTGACGCGCGCCTTTTTTTTTTTTGCCTTTCTGGGCGCAGGGAGGGAAGAGCGCCAGGGTGGTGAACTGCGTACTGGCATTGAAGTCGTACGGTGACTGGAAACAATGTGGTGGCACCGGGCCATGGAAATACGGGGGGAATTTGAAGCCGTCGGCTTCCGGCAAGTCGTTCGTGAGGAAGAACTCCGAGCCATTCCGGAGGTGCCAATCGATGAACGAGGGCGAGGTGCCTTACGAGGAGGCTGGATTCAGCGGTGATTATCATCTTGATTCCGGTGACATGGTTAGCTCCGTGCTTCAATTTTGAAGCTGCTTTGTATTTGTCTTGTTTTGCTAGACGATATGCGGCTAAACGGTTAATGCTTCGTGCAGTCGACGTCACGCCCTTTGAAAATGTTGGTTAGTGCAGTTTTGTCCGACAAGAGGCCCGACGAAGTTCCACAGGTAGGCCAATCAGGTTCCCCATTTTTTAGTAAGCTGTTTACTGGTTCAATGGGATACATGCAAGCAGCTTTCCCTTTCATGTGATGCTTTACCGGTTCCTTGGAGTTTTTATGCTATTGTTTGCCTGCAGCTCTTGGAGTCCATGCTGAGTAAACTCGTCGAGGAATTCGAGAATCGATTGACTAGCCAACATGAATTGGTAGATATCATCTTTGTACACTTCTTATCTGTTGTTTTTGAAATCGTTTTCTGCGTGACATATGGCAATATGTAGACTGGGCCGCCTGGAAATGATATAAACAATCAAATTTTTAATTCATTGGAACAGGTGAAGGCGGCTCTGAAAAATGGTACAGATGGCACCAAATCCTTCTCGAAATCAAAGGTTCTGGTTGAAGCCACCCCAAATTCTAATGAGAAAAAGGCAAGCTATAAATTTGCTCTTATTTAGTATGTTCAAAATATTTGTTTTCAACCGCTGTAGGAATCTCTGTTGCAATCACAAAAATAGATAGGTGTAGGTTGCTAGCAGCTACTATTTTTAGTTTCCAACCAACATTTATTTTGCTTCCTCTATAGATGGATACGATAGAGGTTTACTCCAAACATAGACAAACCAAAAAGGAAGCATATGGAGAAGTTACACTGAAGCAATATTCAATGCTACAACTACAGTCAAAGCATGTTGAGGTATTATTTTAATTATTCATTTTATTTTTCATTGTCTTGGTGGTGATTAAATATTTATTTACTGCTTGTGGTTCTTTTCTTTAGGAACTCAAGGCGGATATTAGAGCTACAAAAGCTGGCATGGAGTTTATGCAAATGAAGTACTCCGAGGACATCAACATCTTAGGTAAAATGGGCATGCCCGAGGTGCTTAATTAAACTAACTATTTTAATATAACGCTAATAAACAAAGTATGCATTTGCAAATTTTATTCCAGGAAGGCATCTGTTTAGCCTTGCACATGCTGCCTCAGGTTATCATATAGTTCTTGAAGAAAATCGCAAGCTGTACAACCAAGTGCAAGATCTTAAAGGTATGCTTGTTATATCGAATATTCATGCCAAGTGTTCCTGGACCAATTAAGGATAAAAATGTGCTGTGAGAAGCAGAAAGAAAACATGTATTTTGATTATTTTCCATGTTTATAGGGAGTATCAGGGTATATTGTAGAGTACGACCCTTTTTACCTGGACAAGTAAGTTCTTGTGCTGTGGGTTCAATTGATGAGGGCAATATAACCATCATCACTCCTTCCAAGTCTGGAAAGGAAGGCCGAAAGACTTTTAGCTTCAACAAGGTGTTTGGCCCTTCAGCAACACAAGGTTTTCTACCTGTCCATTTCTCAATTTTTTTTCGAGCTCTTGAATGGAAGAAGATCGAATAGTTTTTTGTCGTGCAGATGAGGTGTTCTTAGATACCCAGCCCCTTATTCGCTCAGTACTTGATGGATACAACGTTTGCATCTTTGCTTATGGCCAGACCGGTTCAGGGAAGACATATACAATGGTGAGTACAGTAACAATATTTGGTCAATATATATGACTGATATCAATTAATAGTGTTTCTAAAGCATATACTACCATGGATTCCTTTCATGTACCGTTAACATCTTCTCTATCTCTTTTATGTAGAGTGGGCCCAAGAACATGACTGAGCAAACCCAGGGTGTAAATTATCGGGCACTAAGTGATCTATTTAAGCTTGCCGAACAAAGGAAAGGAGCATTCATTTATGATATTGCTGTGCAAATGATAGAGATTTATAATGAGCAAGTCAGGACCTCCTTGTCAATGATGGTCTGAACAAAAGATATCCTCACAACAGCATGTTTCTATCAAATTGTGCCACTTTATTTGTGTTATAAATTGCTTTCACAAGTAAATTATTTTGTACTGCTGAAGTAAATAGTCTTCCTTAACAAGTATATACATTAGAGATTCGAAATAATTCTCAGAATGGACTTAATGTGCCGGATGCAAGCCTTGTCCGTGTCGCATCAACAATGGACGTGATGGAATTGATGAATGTTGGGCAGAAGAACCGTGCAGTCGGCGCCACTGCACTAAATGACCGGAGCAGTCGTTCCCACAGGTAACCCAACCTTTTCTGTGTAAAAAAATCACATGAAATAATTTGAATTGATAAATGAACATAATGAAATATTCTCTTAATCTTGCAGTTGCTTAACTGTACATGTTCAAGGAAGAGATTTGACATCAGGGACCATTCTTCGTGGCTGCATGCACTTAGTTGATCTCGCAGGCAGTGAGCGGGTTGATAAGTCAGAGGTCACTGGAGAAAGGTTAAAAGAAGCACAACATATAAACAAATCATTGTCGGCTTTAGGGGATGTGATTGCTTCACTTGCCCAAAAGAGTGCGCATGTACCTTACAGGAATAGTAAATTAACACAACTCCTGCAAGATTCTCTTGGTAAGATTTAACCTTCTTGCAATTTCTTAATGTGCTGTCACTGACTGCTGAGTATAATTTATATTTCCTCGAATTTTAACAATGCGTCTACAGGAGGTCAGGCCAAAACCTTGATGTTTGTTCATATAAGCCCAGAGAGTGATGCTTTAGGAGAAAGCATAAGCACATTGAAGTTTGCCGAGCGTGTATCCACTGTTGAACTTGGCGCTGCTCGGTTGAACAAAGAGTCTGGAGAAGTTAAAGAACTTAAGGAGCAGGTTTGTTTCTGCTACTATGCTTTGTATCATATTTTCTCACTGCATTTGTTGTTTAAGGTATGCATATATTCTATCTCTATCCAGATTGCTCGACTCAAATCATCATTAGCAATGAAAGATTCAGGATCAGAGCAAAACATTAACCGTGACCCTGAGGCATTTAACATGAAGATGCCTTCACCTGGCTTTTCAAATAGGCGACAGGGTAGTTGTGAGTTGGTGTCTAGCCAAACTAACTTCAGACAACCAATGGAGGACGTTGGAAACATAGAGGTACTAATGCCTTGCATTATTTCTTCTATAAACCTTTCTACGATTCATATTTGTTTGACATTTACAAGTTACACAAGTGATATTAGCAAATTATGATAATACAACTGTCCTTTCAGCGGCCATGCTGTTGTTAACATTTTTGTCCCATCATGTTTGATCTGGTTTTTATACAGGTTAGAGCCAATCCAACATTAAGACAGAAGAAACCAAGCTTTGATCTCCAGGACTTATTAGCGTCAAATGATTCCCCATCATGGCCAGATAGCATTTCAAGGGCAAATTTTCAAATGGGAGAAGAAAGAGAGACTATTGGTGGGGAATGGATCGATAAGGTTGTAGTGAACAACAATAACTCAGTAGGTGATTGGGAAGGCGACAGTGCAGCTTTACCTGACTTCTTTTACCAAAGGTACCATTCAGGTACAAGAGATAAGCAATACCTGAGAAATAACTCAAGAAAAAAGGACGGAAATGAGTTTGAGCAGCAAAGACCAAGATTTTATTCCACAAATACTGATGATTCTGATGACATTGACATTGCAACAAGTGATTCCTCAGAATCAGATGCACTATGGCAGTTCAATGTCCAAAGCATCAATAGTTCAATTAGCGAGAATGGTTCAAAGATCAAGAAACCACAAACGAAGCTAAGAGAGAGCTCAGATACCAGGTAACCATTTTTTTTTACATTAACAACTTTTTTTTACAACAAACATTATTTTTTAAGAATAACAGGGCTAATAACTCCCTTGTCCCGTTTTTGTTGAAGTAAAATCATCCTACACTGTTTTAGCACCCACAATACTCATGGTATAAAGCAGATATAAATAATTTAACTATGATGAACTGAACTTGAATAAACAGTCATATGGACTTGGATATTAGCGTATTACTTGGGACTACACTAATTGTGAATTGTGGGTTATGACTAATAGTGCATGGATGGAAAATTATCTTTATGTTGTTATTTAAAGATATAGTTCACCTCATGCATAATAGTGATTGCTGTGAATTTCAAGATTGTGGTCTGCTAAGGCTAGTCACAGAGTTGCTAATTCTCTGAAATTTAATTAGTATGAAAAATGTGTACTGGAAGTACATATCTATTAAATATTAATCCCATTAACTTTTGGTTCTTTTATATTTGGTTGATACTAATATTTATTTAAAAAGAAAAATATATAATCTAAACTATAACATACTAAACTATTCGCATAAGATATATCATTTTACTCCATGAAAGGCTGATTAAGATATTCCATGCTTCCATGTATTTACTCATCAGGACACCACTCCATTCTCAAATACCATCTGCTTCGAGGAAAACCTCCAATGGAAATAGATCTGGACGGCAACCTTTAAGTGGTAGCGATAGCAGAAGGCTCTCATCAAATGGTAGACATGCTGGTACAAAGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA010904