BGIOSGA011568

From RiceWiki
Revision as of 09:33, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA011568| Description = Phospholipase D| Definition = Oryza sativa Indica Group BGIOSGA011568, complete gene.| tag = OS03G0119100| tid = BGI...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA011568

Description

Phospholipase D

Definition

Oryza sativa Indica Group BGIOSGA011568, complete gene.

LocusTag

OS03G0119100

Ensembl Transcript ID

BGIOSGA011568-TA

Ensembl Protein ID

BGIOSGA011568-PA

Length

3675

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:1242610..1246284

Sequence Coding Region

1245382..1246284,1245046..1245162),complement(1244693..1244887,1244345..1244593),complement(1244192..1244260
,1243957..1244104),complement(1243582..1243730,1243280..1243450),complement(1242981..1243178
,1242610..1242903

Genome Context

<gbrowseImage1> name=IndicaChromosome03:1242610..1246284 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:1242610..1246284 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATGTGGTGTGGCCGCACGGGCACGGCGTCTGGGGCTCGTCGTCGGCGTCGCGGCGGTCGGCGATGCTCCACGGCAGCCTTGACATCTGGATCCACGAGGCGCGGAACCTCCCAAACATGGACATCGTCTCCAAGACCGTCGTCGACATCCTCGGGACGAAGAAGAAGAAGAAGGCGGCCAACGGCGCCATGACCAGCGACCCCTACGTCACTGTGCAGCTCGCGTCCGCCACCGTCGCGCGCACCTACGTCGTCAACGACGACGAGAACCCCGTGTGGGCGCAGCACTTCCTCGTCCCCGTCGCGCACGAGGCGCCCGCCGTCCACTTCCTCGTCAAGGACAGCGACGTCTTCGGCGCCGAGCTCATCGGCGAGGTCGTCGTCCCCGCCGAGCAGCTCGAGGCCGGGGAGCACGTCGAGGGCGTCTACCCGGTCCTCGATCCCGCCGCCGGCAAGCCGTGCGCCCCCGGCGCCGTGCTGCGGCTGTCGGTGCAGTACATCCCCGTGGCGAGGCTAACCATGTACCACCACGGCGTCACCCCGGGCCCGGACTTCGCCGGCGTCCCCAACACCTACTTCCCGCTGCGCCGCGGCGGCCGGGTGACGCTGTACCAGGACGCGCATGTGCCGGAGGGCTCGCTGCCGGAGATCAGGCTGGGCAATGGCGCGCTCTACCGGCAAGGCCAGTGCTGGCACGATGTCTACGACGCGATATCGCAGGCGAGGAGGCTCATCTATATCACCGGGTGGTCGGTGTTCCACACCATTCAGCTTGTGCGGGACGGCGGCGCCGGCGTCTCGCTGGGCGATCTGCTGAAGAGGAAGTCGCAGGAGGGGGTGAGGGTGCTGCTCCTCGTCTGGGACGATCCAACGTCAAGGAACGTCCTTGGTATCCAGATGGAAGGTTACATGGGCACACGGGATGAGGAGACCCGTAGATTTTTCAAGCATTCTTCAGTTCAGATACTGCTCTGCCCGCGTTCTGCTGGGAAAAGGCACAGCTGGGTTAAGCAGCAGGAGACCGGAACCATTTTTACACATCATCAGAAAACAGTGATTCTGGATGCTGATGCCGGCAACCATAAAAGGAAAATAGTTGCTTTTGTTGGAGGCCTTGATTTATGCGGTGGACGATATGATACACCTACTCATCCTCTTTTTCGGTCTCTCCAGACATTGCACAAGGACGACTATTATAACCCAAACTTTGCGGTACTTGATGCCCAAGGGCCCAGAGAACCATGGCATGATTTGCATTCTAAGATTGATGGCCCAGCGGCATATGATGTCTTGACAAACTTTGAGGAGCGCTGGTTAAAGGCATCCAAGCGCAGCGGGGTTAAAAAATTGTCAAAGGCAAATAATGACACATTGCTATGGATTGGAAGGATACCTGATATTGCAAGCATTGACGATGAAGTGTATTCAAGTGACAATGATCCAGAGCGATGGGATGTTCAGATATTCCGGTCAATTGATTCAAATTCTGTCAAGGGTTTTCCCAAAAATCCAAGAGAAGCAACCAGTAAGAATCTCGTTTGTGGGAAAAACGTACTAATTGATATGAGCGTACAAACCGCTTATGTGAATGCAATCCGAGGAGCTCAACACTTCATCTATATTGAAAATCAGTATTTCCTTGGTTCTTCATTTAATTGGGATTCACATAAAGATGTAGGTGCTAATAACTTAATACCGATTGAAATAGCTCTCAAAATTGCCAACAAGATTTATGCCAATGAGAGGTTTTCAGCGTACATAGTAATTCCAATGTGGCCTGAAGGTAATCCTACTGGTGCTCCTACACAGAGAATACTTTACTGGCAGAAAAAAACAATGCAAATGATGTATGAGGTAATTCACAAGGCATTGAAAGAAGTAGGGCTGGATAACACATATGAGCCACAGGATTACCTGAACTTCTTCTGTCTTGGCAATCGTGAAGCAGGCGGCAGTCCTAGCACTTGCAGTGGATCAAGTTCAGCCAACAATCCCCAGGATCAAGCTAAGAAGAACCGGAGGTTCATGGTGTATGTGCACTCGAAAGGGATGATCGTGGATGATGAATACGTGATAATTGGATCGGCTAACATTAACCAGAGATCCATGGAAGGAACCAGAGACACCGAGATCGCCATGGGAGCGTACCAGCCCCAGTACACATGGGCAAACATGCTTTCTGCTCCTCGTGGACAGATCTACGGGTACAGGATGTCACTGTGGGCAGAGCACATTGGAGCGGTGGAGGAAAGCTTCAGTTGCCCAGAGAGCCTGGAGTGCACGAGGCAGGTTCGGCACATCGGGGAGCAGAACTGGAGGCAGTTCGCCTCCAGCGAGGTGAGCGAGATGAGAGGGCACCTCATCAAGTACCCCGTCAGCGTCGCCCGCGACGGCAAGGTGAAGCCCCTGCCGGGATGCGCCGCGTTCCCGGACCTCGGCGGCAACATCTGCGGCACGTTCCTGCCCATCCAAGAAAACCTCACCATATGA</cdnaseq>

Protein Sequence

<aaseq>MDVVWPHGHGVWGSSSASRRSAMLHGSLDIWIHEARNLPNMDIVSKTVVDILGTKKKKKAANGAMTSDPYVTVQLASATVARTYVVNDDENPVWAQHFLVPVAHEAPAVHFLVKDSDVFGAELIGEVVVPAEQLEAGEHVEGVYPVLDPAAGKPCAPGAVLRLSVQYIPVARLTMYHHGVTPGPDFAGVPNTYFPLRRGGRVTLYQDAHVPEGSLPEIRLGNGALYRQGQCWHDVYDAISQARRLIYITGWSVFHTIQLVRDGGAGVSLGDLLKRKSQEGVRVLLLVWDDPTSRNVLGIQMEGYMGTRDEETRRFFKHSSVQILLCPRSAGKRHSWVKQQETGTIFTHHQKTVILDADAGNHKRKIVAFVGGLDLCGGRYDTPTHPLFRSLQTLHKDDYYNPNFAVLDAQGPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKRSGVKKLSKANNDTLLWIGRIPDIASIDDEVYSSDNDPERWDVQIFRSIDSNSVKGFPKNPREATSKNLVCGKNVLIDMSVQTAYVNAIRGAQHFIYIENQYFLGSSFNWDSHKDVGANNLIPIEIALKIANKIYANERFSAYIVIPMWPEGNPTGAPTQRILYWQKKTMQMMYEVIHKALKEVGLDNTYEPQDYLNFFCLGNREAGGSPSTCSGSSSANNPQDQAKKNRRFMVYVHSKGMIVDDEYVIIGSANINQRSMEGTRDTEIAMGAYQPQYTWANMLSAPRGQIYGYRMSLWAEHIGAVEESFSCPESLECTRQVRHIGEQNWRQFASSEVSEMRGHLIKYPVSVARDGKVKPLPGCAAFPDLGGNICGTFLPIQENLTI</aaseq>

Gene Sequence

<dnaseqindica>1..903#1123..1239#1398..1592#1692..1940#2025..2093#2181..2328#2555..2703#2835..3005#3107..3304#3382..3675#ATGGATGTGGTGTGGCCGCACGGGCACGGCGTCTGGGGCTCGTCGTCGGCGTCGCGGCGGTCGGCGATGCTCCACGGCAGCCTTGACATCTGGATCCACGAGGCGCGGAACCTCCCAAACATGGACATCGTCTCCAAGACCGTCGTCGACATCCTCGGGACGAAGAAGAAGAAGAAGGCGGCCAACGGCGCCATGACCAGCGACCCCTACGTCACTGTGCAGCTCGCGTCCGCCACCGTCGCGCGCACCTACGTCGTCAACGACGACGAGAACCCCGTGTGGGCGCAGCACTTCCTCGTCCCCGTCGCGCACGAGGCGCCCGCCGTCCACTTCCTCGTCAAGGACAGCGACGTCTTCGGCGCCGAGCTCATCGGCGAGGTCGTCGTCCCCGCCGAGCAGCTCGAGGCCGGGGAGCACGTCGAGGGCGTCTACCCGGTCCTCGATCCCGCCGCCGGCAAGCCGTGCGCCCCCGGCGCCGTGCTGCGGCTGTCGGTGCAGTACATCCCCGTGGCGAGGCTAACCATGTACCACCACGGCGTCACCCCGGGCCCGGACTTCGCCGGCGTCCCCAACACCTACTTCCCGCTGCGCCGCGGCGGCCGGGTGACGCTGTACCAGGACGCGCATGTGCCGGAGGGCTCGCTGCCGGAGATCAGGCTGGGCAATGGCGCGCTCTACCGGCAAGGCCAGTGCTGGCACGATGTCTACGACGCGATATCGCAGGCGAGGAGGCTCATCTATATCACCGGGTGGTCGGTGTTCCACACCATTCAGCTTGTGCGGGACGGCGGCGCCGGCGTCTCGCTGGGCGATCTGCTGAAGAGGAAGTCGCAGGAGGGGGTGAGGGTGCTGCTCCTCGTCTGGGACGATCCAACGTCAAGGAACGTCCTTGGTATCCAGATGGTATGCACAATGCAACATGCAATCACAAAATTAATTTTCGGCTATTTGTTTCTTGTATCAAACTGATGGTCACACCACTTATTTGGCTTCTGGTCCAAATTTCATTGCTTTGTCTAATGGTAGTTGGGGTTGATGGAGTGACTCATTGATCTCTGAAAACCTGTGAATAATATATTCATGCAAATACAGCTTGACTTGTTGTCAGAGTTTTCTCTATAGGAAGGTTACATGGGCACACGGGATGAGGAGACCCGTAGATTTTTCAAGCATTCTTCAGTTCAGATACTGCTCTGCCCGCGTTCTGCTGGGAAAAGGCACAGCTGGGTTAAGCAGCAGGTTGTTTATTTACAATTTGTTTTCTTCAGTAAGCTTTGTCTCCTCTGAATGCCATAATTTGCTTCATATAGACACATGTCACCAGCTAACATCTTTTTAGTCAAAATAGCTGTTCTTGTGGACCATGTAATGATGTTAACAGTTGAAAATTGAACCAGGAGACCGGAACCATTTTTACACATCATCAGAAAACAGTGATTCTGGATGCTGATGCCGGCAACCATAAAAGGAAAATAGTTGCTTTTGTTGGAGGCCTTGATTTATGCGGTGGACGATATGATACACCTACTCATCCTCTTTTTCGGTCTCTCCAGACATTGCACAAGGACGACTATTATAACCCAAACTTTGCGGTGAGATTACTTTGTCCTATTGTTCATGTGCCTGTATCACTGTATGTGGTTTATACACATGAAAATAGTTCCTGTAATTGACGCATCTTGTATTTGCAGGTACTTGATGCCCAAGGGCCCAGAGAACCATGGCATGATTTGCATTCTAAGATTGATGGCCCAGCGGCATATGATGTCTTGACAAACTTTGAGGAGCGCTGGTTAAAGGCATCCAAGCGCAGCGGGGTTAAAAAATTGTCAAAGGCAAATAATGACACATTGCTATGGATTGGAAGGATACCTGATATTGCAAGCATTGACGATGAAGTGTATTCAAGTGACAATGATCCAGAGCGATGGGATGTTCAGGTAAGATCCTTCAAAGGTTTTCACAGCTACAGATAAACAAAGTATGTGACCAAACAGCACTGAACAGTATTAACTTGGAAGCAGATATTCCGGTCAATTGATTCAAATTCTGTCAAGGGTTTTCCCAAAAATCCAAGAGAAGCAACCAGTAAGGTAACTAAGATATAAATTTCACCCAATTATGCTATGTTTGGTTATTCTTTGTATTTACCTGACACAGACTTTTCCTTTGGTTGACAGAATCTCGTTTGTGGGAAAAACGTACTAATTGATATGAGCGTACAAACCGCTTATGTGAATGCAATCCGAGGAGCTCAACACTTCATCTATATTGAAAATCAGTATTTCCTTGGTTCTTCATTTAATTGGGATTCACATAAAGATGTAGGTAAGCATGAGCTTTGTTTGCTTCAAATCTTGTTGTTCAACTCAATGTATTCTGGCCTTTTATGGCACGTTCCAATTGCGTTCTCTAATAGTAACTTCATTTAAAATTTGCTGCTTTATGTTGGAGAATAATTCAAAATTTCTTGACCCTTATCATGACGTAAATAAATACGACAAGTACTTATGGTTGCCCCTAATTTCAGGACTTAAAATTTGTTCTGCTGCAGGTGCTAATAACTTAATACCGATTGAAATAGCTCTCAAAATTGCCAACAAGATTTATGCCAATGAGAGGTTTTCAGCGTACATAGTAATTCCAATGTGGCCTGAAGGTAATCCTACTGGTGCTCCTACACAGAGAATACTTTACTGGCAGGTTAGAGCGTCTCTCTAGCATTGTCTTCTAGTCTGCTCAACTGTGTACTATCTGCTACTACATTCTACAGAGCTAACTTCTCTCAGTATAGCAATGTAACTTATTTGTTGTCATTGTTGTTGTCATTGTAGAAAAAAACAATGCAAATGATGTATGAGGTAATTCACAAGGCATTGAAAGAAGTAGGGCTGGATAACACATATGAGCCACAGGATTACCTGAACTTCTTCTGTCTTGGCAATCGTGAAGCAGGCGGCAGTCCTAGCACTTGCAGTGGATCAAGTTCAGCCAACAATCCCCAGGTGAGACTGCAGTACTTCTGCTTCTCTCGCAGCATACTCAAATTGTATGCCATCCGTACATTCAGAGTTCAGATTTGTCTTGCTGCGACCTGTACATTCAGGATCAAGCTAAGAAGAACCGGAGGTTCATGGTGTATGTGCACTCGAAAGGGATGATCGTGGATGATGAATACGTGATAATTGGATCGGCTAACATTAACCAGAGATCCATGGAAGGAACCAGAGACACCGAGATCGCCATGGGAGCGTACCAGCCCCAGTACACATGGGCAAACATGCTTTCTGCTCCTCGTGGACAGGTAAATGATCCCTTGATCACCCAAAATTCCACAGATTTCACAGTTGCGCTGATGGATTGGTTTTGGTGAGCTCGAAGATCTACGGGTACAGGATGTCACTGTGGGCAGAGCACATTGGAGCGGTGGAGGAAAGCTTCAGTTGCCCAGAGAGCCTGGAGTGCACGAGGCAGGTTCGGCACATCGGGGAGCAGAACTGGAGGCAGTTCGCCTCCAGCGAGGTGAGCGAGATGAGAGGGCACCTCATCAAGTACCCCGTCAGCGTCGCCCGCGACGGCAAGGTGAAGCCCCTGCCGGGATGCGCCGCGTTCCCGGACCTCGGCGGCAACATCTGCGGCACGTTCCTGCCCATCCAAGAAAACCTCACCATATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA011568