BGIOSGA011693

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Revision as of 09:35, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA011693| Description = Putative DNA cytosine methyltransferase Zmet3| Definition = Oryza sativa Indica Group BGIOSGA011693, complete gene.| ...")
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Gene Name

BGIOSGA011693

Description

Putative DNA cytosine methyltransferase Zmet3

Definition

Oryza sativa Indica Group BGIOSGA011693, complete gene.

LocusTag

OS03G0110800

Ensembl Transcript ID

BGIOSGA011693-TA

Ensembl Protein ID

BGIOSGA011693-PA

Length

6487

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:868166..874652

Sequence Coding Region

868166..868411,868972..869094,869210..869309,869394..869440,869519..869677
,870260..870359,870436..870527,870617..871759,872635..872720
,872973..873100,873192..873331,873429..873497,873607..873745
,873851..873913,874114..874157,874566..874652

Genome Context

<gbrowseImage1> name=IndicaChromosome03:868166..874652 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:868166..874652 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGTCGCAGGCGCGCCTGTGGGTTTCGTCTACACTAGTCGTCGTCGAGAGGCGCGGAGGCAACGCCGTGTGGTCGCCATCGCCATCGCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCGCGCTTCCTCGCCGCCGCGCGCCCAGGGCCATCGGCGGCGGACGCCCTCGCCCACGCGCGCGAGAGAGGGGGGCGAGAGATTATCGGACGAGTCGCTTTGCGGAGCTTTCTAGAATGGTGGACTGGGCTTCAGATAGCGACAATGATAAGTTCGAGTGGGACACAGACGGTGAGGCTGAGACCTCATCTGCCCCGGCCCTAAGGAACATAGATGCTCCTGGTCCGTCCACGAGGCTGCCGCAGGATGCAAATGGGAAGGCCAACGGGTCAGGTGCTTTGGTTGCTGAATTTATGGGAATGGGATTCCCAAAAGAAATGATCTTGAAAGCGATTAAGGAGATTGGGGATACAGATACAGAGCAATTGCTTGAGTTACTTCTGACTTATCAGGCAATAGGCGGTGACGCTTCAGTGGGTAACTGCTCTGCTTCGGCCTGTGCCCCCCAGACTCTTGAAGTCGACGAGGAGGAGGATGATACTAATTGGGATGAATATGATACTGCTGGCAATTGTGACAGGACTCCTCACTCTGATGGTTCTGGTGACGAGGATTTCTTTCAAGAAATGTCAGAGAAGGATGAAAAAATGAAGTCCTTAGTCAACATGGGTTTTCCTGAAGATGAAGCAAAGATGGCTATCGATAGATGTGGTCTCGATGCGCCTGTAGCAGTGTTGGTTGATTCAATCTATGCATCACAGGAAGCAGGAAATGGTTACTCTGCAAACTTATCTGACTATGAGGATACAGAGTTCAGTTCCTTTGGAGGAAGAAAGAAAACAAGATTTGTGGATGGAAGCAAGAAGAGAAAGCGGTATGGAAGTGGGCCATCTGGGAATCAAGTGCCGTTTGATGGCAGCCACGAAGAGCCCATGCCTCTTCCAAATCCAATGGTGGGATTCAGCTTGCCCAATGAGAGGTTAAGGTCAGTCCACAGAAATCTTCCTGACCAAGCTCTTGGGCCACCATTCTTTTACTATGAAAACGTGGCCCTAGCTCCAAAAGGTGTATGGACAACCATCTCAAGGTTTTTATATGACATTCAGCCTGAGTTTGTGGACTCCAAGTACTTTTGTGCTGCTGCCAGGAAGAGGGGTTATATTCATAACCTGCCGATTGAGAACAGGTCACCTGTTCTCCCAATGCCTCCCAAAACAATATCTGAAGCCTTTCCTAATACCAAGAGGTGGTGGCCTTCCTGGGATCCAAGGAGGCAGTTCAACTGCTTGCAAACTTGTATGGCAAGCGCAAAGCTTACAGAGCGAATTCGTTGTGCTTTGGGTAGATTCAGTGATGTACCAACTCCACAAGTTCAGAAGTATGTCTTGGACGAATGTAGGAAATGGAACCTAGTTTGGGTCGGAAAGAATAAGGTCGCTCCTCTAGAGCCTGATGAGATGGAGTTCCTGTTAGGGTACCCTAGAAACCACACTAGGGGAGTTAGCAGGACGGAGAGGTACAGGGCTCTCGGGAATTCATTCCAAGTTGATACAGTAGCATACCATCTCTCTGTGCTGAGGGACCTGTTTCCCAATGGAATGAATGTCTTATCCCTGTTTTCTGGTATTGGAGGAGCAGAGGTAGCTCTCCACAGACTGGGGATACGTATGAAAACAGTGATATCTGTTGAGAAATCAGAAGTGAACAGAACGATTCTGAAGAGCTGGTGGGATCAGACACAAACTGGAACGCTGATTGAAATCGCCGACGTGCGGCATCTTACTACTGAAAGAATTGAAACATTCATCAGAAGGTTTGGCGGTTTTGACCTGGTGATTGGTGGCAGCCCGTGCAACAACCTTGCTGGCAGCAACCGCCATCACCGAGATGGTCTGGAGGGCGAGCACTCCGCGCTCTTCTACGATTACATTAGAATATTAGAACATGGTCCTACGAGGAGGGTGGTCTTTTGCACTCGCAGTGTGCTAGGTTCCAGCAATGGCGCGCCATCTGGTGGCCTTGTCAAGAAAAGAAAGATTGTGGAGCACATCATTCTGCTTAGAGCCAAGCCAAATATCTCGGACGCTGAAGAAAAGGACATGCTAGATTACTTGTATACTTCTCAGTATCAGATGAGAGGGATTCTAGCTGTGTCATTAGGGCGCATAGAGGATCCCAACACAGAGAACTTTACGCATGCTGTTTTGATGCGTTTTCAGCAGAAAGACGACATTGCAAAGTTCCACAGTAGTCCCTACTACTACAAAATTCTCGATGAGCACGTAAAACCCGTTTCATATGGCTCGGTTTCTGTAGATTTTGAATCTGAAGTTGAAGATGACATTATCCCTCTCTTCCGTCGGGGAGAGGATTTTAACTATGGAGTGGAGTTCATGCTACTGATATCTTTCTTGGAAAGTGCATCTGGAGATTCAGTGGAGGATGCATTAGCTTCTCTTCAGAGGTTCATCAGTCAATGCAGTTCTTTCATTGTTCAGGCAACCTTAGGCTGCTGTCTGAATCATATGGACAGTGGTTACAGTCATGCTGCAGTTATCCGTTTTCCGTCATTTGATGACTTCAAGATATTCAGGGAGGGGATGGAATACAAGGATATGTGGGCATCAACATTTCAACCGATTGTGGAGAAATCTCTTGAGCTACACTTCACAGTTGATCCCGTGGGTAACCAGCTGATGTAG</cdnaseq>

Protein Sequence

<aaseq>MVAGAPVGFVYTSRRREARRQRRVVAIAIAFLLLLLLLLRRRALPRRRAPRAIGGGRPRPRARERGARDYRTSRFAELSRMVDWASDSDNDKFEWDTDGEAETSSAPALRNIDAPGPSTRLPQDANGKANGSGALVAEFMGMGFPKEMILKAIKEIGDTDTEQLLELLLTYQAIGGDASVGNCSASACAPQTLEVDEEEDDTNWDEYDTAGNCDRTPHSDGSGDEDFFQEMSEKDEKMKSLVNMGFPEDEAKMAIDRCGLDAPVAVLVDSIYASQEAGNGYSANLSDYEDTEFSSFGGRKKTRFVDGSKKRKRYGSGPSGNQVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHRNLPDQALGPPFFYYENVALAPKGVWTTISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPIENRSPVLPMPPKTISEAFPNTKRWWPSWDPRRQFNCLQTCMASAKLTERIRCALGRFSDVPTPQVQKYVLDECRKWNLVWVGKNKVAPLEPDEMEFLLGYPRNHTRGVSRTERYRALGNSFQVDTVAYHLSVLRDLFPNGMNVLSLFSGIGGAEVALHRLGIRMKTVISVEKSEVNRTILKSWWDQTQTGTLIEIADVRHLTTERIETFIRRFGGFDLVIGGSPCNNLAGSNRHHRDGLEGEHSALFYDYIRILEHGPTRRVVFCTRSVLGSSNGAPSGGLVKKRKIVEHIILLRAKPNISDAEEKDMLDYLYTSQYQMRGILAVSLGRIEDPNTENFTHAVLMRFQQKDDIAKFHSSPYYYKILDEHVKPVSYGSVSVDFESEVEDDIIPLFRRGEDFNYGVEFMLLISFLESASGDSVEDALASLQRFISQCSSFIVQATLGCCLNHMDSGYSHAAVIRFPSFDDFKIFREGMEYKDMWASTFQPIVEKSLELHFTVDPVGNQLM</aaseq>

Gene Sequence

<dnaseqindica>1..246#807..929#1045..1144#1229..1275#1354..1512#2095..2194#2271..2362#2452..3594#4470..4555#4808..4935#5027..5166#5264..5332#5442..5580#5686..5748#5949..5992#6401..6487#ATGGTCGCAGGCGCGCCTGTGGGTTTCGTCTACACTAGTCGTCGTCGAGAGGCGCGGAGGCAACGCCGTGTGGTCGCCATCGCCATCGCCTTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCGCCGCGCGCTTCCTCGCCGCCGCGCGCCCAGGGCCATCGGCGGCGGACGCCCTCGCCCACGCGCGCGAGAGAGGGGGGCGAGAGATTATCGGACGAGTCGCTTTGCGGAGCTTTCTAGAATGGTGGTAAGGGCTCCCGCTCCCCCCCTCCGAAGCCTCCTCTTCCTCTCTCCTCCAATCTCCATCCTGCTGCTGCTGCATGATGTTAGTTTGGCCGTGCCGCGGTGGACGACCCTCCTCGTCGTTGTTCGTGGATTGCTCCGTGCACGATTAGGTTGTGGGTTTCCGTTTGGGATTGGGATGGAGGGGCTCCTCTGGTCTGTTTAGTCGCGAAAGAATGATACTTTCTTGTATGTTTTGCTGCATTTTGGATCCTAAAATTATCTGATACTGTATTGATGTCGCGCTTGAGAATTCGATTTTGCGATGTCGCGTGAACAGTTCGGGCTTGCGGAGCGTGGAGGAGCAGAATATTTCCCCCCTTTTGATTTGGATTTAGGGTTTAACTGTTTGGCTATCCCCTTGAAATTTGATGAGGGCTACGTGATATAGGGGTGGCAGTATGCCTCATACAAGATGCTACATTCAACCCGATTCAGTACTTGCGTTAATTTTTCTCCTCTGAATCGCCTTGTTTTCACTGTTAGTCGGGATATTTCAGACGTGTTGCTTAATTTATGTCACAGGACTGGGCTTCAGATAGCGACAATGATAAGTTCGAGTGGGACACAGACGGTGAGGCTGAGACCTCATCTGCCCCGGCCCTAAGGAACATAGATGCTCCTGGTCCGTCCACGAGGCTGCCGCAGGTAGGAGATAGAGGTCTATCTTTGAACACACGTGCTAGTCATTTGTTCAAACCATGTTGTTACTTTGCTGTAATTATAATCAAAATGTGGTGTTTGTTTGTGGAACTGTCTGAAGGATGCAAATGGGAAGGCCAACGGGTCAGGTGCTTTGGTTGCTGAATTTATGGGAATGGGATTCCCAAAAGAAATGATCTTGAAAGCGATTAAGGAGATTGGTAACGATAACAATAATCTAGTTCTCTTATTTGCTTCTGGTTGCATTTTGAATTTTCTGTTTCAACTGCTGTCTTTTCTTTCAGGGGATACAGATACAGAGCAATTGCTTGAGTTACTTCTGACTTATCAGGTATTTGCCCACATGGTTGCATCACTCTGTTTATTATTATCTAATGCTCTACTGTACAAGTGATGCCGTGTAATGCAGGCAATAGGCGGTGACGCTTCAGTGGGTAACTGCTCTGCTTCGGCCTGTGCCCCCCAGACTCTTGAAGTCGACGAGGAGGAGGATGATACTAATTGGGATGAATATGATACTGCTGGCAATTGTGACAGGACTCCTCACTCTGATGGTTCTGGTGACGAGGTATTTACATGACCCCCTCCTTGGTCATTATATATTTATATGCACTTGCTGTGTCTATTTCTTGACCAGTTTCCCTGATCATGGCTGCACCATTTTTTGCACTTGCTTCATGCTAAGAACACATTCCCTTATTAATACCTATGTAGGTGAACTACTGGTCGTATAATAAATTAGAAAGTTTCATACCTGTGTTCTATTTCACTCTTAGTAAACAAGTATAGATATGGTTAGCTATACTGCAGTGCTGTAGTCTTTTGTATCTATAAAACCATACATGTCCCTGTAGGGTTGTTAAAGGAGCTTTGTTGATCCAGCCCTTCCTTCCATCATTCTATGCATCTCCAGTTAGCATTTTCTTTATGGTGCCTTTGTAGTGAGAGTTAGCAGAACTACTGTAGAACCATCAGAGAGAGGATCATATATTTGGTAGCAGTAAATTGTAGGCTTTGCAAATGGTATATGTGTATAACTGTATATGTGATGCCTGCATTAGTTGCTTTATTAATAGGTTATTCTGGACTGCAAGTCATTAGAGAGATGTAACAAGTGTTTTCAATTTGCCTTTAATGTGCTTTTATGCAGGATTTCTTTCAAGAAATGTCAGAGAAGGATGAAAAAATGAAGTCCTTAGTCAACATGGGTTTTCCTGAAGATGAAGCAAAGATGGCTATCGATAGATGTGGTATGCCTCTATTGAATTTGATGCTTTGACAGGAAGGAACCTTATTCTGCTGCCTTTGTTGGCTTAAATTTCCCAGGTCTCGATGCGCCTGTAGCAGTGTTGGTTGATTCAATCTATGCATCACAGGAAGCAGGAAATGGTTACTCTGCAAACTTATCTGACTATGAGGTACCTTGTGATTATAATGCATCTGAATCAATAGGTTGTTTCATTTCATTAAATATAACGGCATTGGCATCATCTTTATAATTGTGCAGGATACAGAGTTCAGTTCCTTTGGAGGAAGAAAGAAAACAAGATTTGTGGATGGAAGCAAGAAGAGAAAGCGGTATGGAAGTGGGCCATCTGGGAATCAAGTGCCGTTTGATGGCAGCCACGAAGAGCCCATGCCTCTTCCAAATCCAATGGTGGGATTCAGCTTGCCCAATGAGAGGTTAAGGTCAGTCCACAGAAATCTTCCTGACCAAGCTCTTGGGCCACCATTCTTTTACTATGAAAACGTGGCCCTAGCTCCAAAAGGTGTATGGACAACCATCTCAAGGTTTTTATATGACATTCAGCCTGAGTTTGTGGACTCCAAGTACTTTTGTGCTGCTGCCAGGAAGAGGGGTTATATTCATAACCTGCCGATTGAGAACAGGTCACCTGTTCTCCCAATGCCTCCCAAAACAATATCTGAAGCCTTTCCTAATACCAAGAGGTGGTGGCCTTCCTGGGATCCAAGGAGGCAGTTCAACTGCTTGCAAACTTGTATGGCAAGCGCAAAGCTTACAGAGCGAATTCGTTGTGCTTTGGGTAGATTCAGTGATGTACCAACTCCACAAGTTCAGAAGTATGTCTTGGACGAATGTAGGAAATGGAACCTAGTTTGGGTCGGAAAGAATAAGGTCGCTCCTCTAGAGCCTGATGAGATGGAGTTCCTGTTAGGGTACCCTAGAAACCACACTAGGGGAGTTAGCAGGACGGAGAGGTACAGGGCTCTCGGGAATTCATTCCAAGTTGATACAGTAGCATACCATCTCTCTGTGCTGAGGGACCTGTTTCCCAATGGAATGAATGTCTTATCCCTGTTTTCTGGTATTGGAGGAGCAGAGGTAGCTCTCCACAGACTGGGGATACGTATGAAAACAGTGATATCTGTTGAGAAATCAGAAGTGAACAGAACGATTCTGAAGAGCTGGTGGGATCAGACACAAACTGGAACGCTGATTGAAATCGCCGACGTGCGGCATCTTACTACTGAAAGAATTGAAACATTCATCAGAAGGTTTGGCGGTTTTGACCTGGTGATTGGTGGCAGCCCGTGCAACAACCTTGCTGGCAGCAACCGCCATCACCGAGATGGTCTGGAGGGCGAGCACTCCGCGCTCTTCTACGATTACATTAGAATATTAGAACATGTAAAGGCTACCATGTCAGCAGTCTAGTTTAAGCTATCACATTAACTAACTCTGTGATTTATTGTTGTTAACGAAGTTAGAACCTGTTGATTGATATTGCTGAACCTGATGTGATGTTATTGCACTCAAACAGGAGTGTTTTTTCCCCTTCATGTCATGATTATATGTTTCGGTTTTTACGGCGGTACGTGATGCTTTGCAATGTTCCCCCAATTTTAGTAGTACTTGCAGTTCTGGTGCTAAAGATATGAAGATTGTTGATTGCTGAAGTTTATGAAAGTATTTATGATTCGATGGTGCAATCTGCCGTGATATTATTGCCCTCAAATAAGGGTATTTCTTTCTTCATTTCATGATTGTATATTCTGGTGTTTTTGTGGCAACCCTGTTGTAAATTGGTTTGTGCACAAAAACAGAGTTCAAAAACAACTGTTGGCCCCAACAAATATCAGAATCTGGGAAGCAGAACAGAAAAGGACAGTGCTGTACGCTTCAGCCACTCCCTTCCGGTGAAGAGTTGCTCACCACATTATGTTCACCTAACAAAAATATCCCACTTCTACTGGCAGATATCCCACCACAGCTCTTCCAAGGCTCCAACCCCAAATCCAAGCCATAAAACCTTTGCAACAACCATGAGAGCTAAGCTTCCAAGCTCTGAATTTTCAGGATGTTGATGCCAGCTTCTGCTCAGATCCCTCATCACACAATACGTCCTGTTGCAAGTTACTTAGTTCTGCATCGACGGCGCCGGCACAAGTCTGACCGGCGTGAGTTCTTGATCTCATCTTGGGGTTCAATCCTAATGCATTTTCAGTTTAGCATATGGCCAAAGTTGAGTTAACCATATTCCTCATGCAGGTTTTAGATTGCAGGGTCCTACGAGGAGGGTGGTCTTTTGCACTCGCAGTGTGCTAGGTTCCAGCAATGGCGCGCCATCTGGTGGCCTTGTCAAGAAAAGGTGTGCGACTACGTATTTTGCACTGCTAGGTCAGCATGAGATCATGAAAAGAGAAATGTCCATCCTTAAATTTACATTGTGAAAGAACAATACTTTCATCCAATTAACCTCTAAAGTTCTGCATACTATCATTTTACTTTTCCTGATTCCTGAATATATATATATAGCACCTACTTCAGAAGACCTTAGTATAATAGTACATGATAGTCTGGAGTATATAGATGGACAGTCTGACTTGGTGAACTATGGCAGAAAGATTGTGGAGCACATCATTCTGCTTAGAGCCAAGCCAAATATCTCGGACGCTGAAGAAAAGGACATGCTAGATTACTTGTATACTTCTCAGTATCAGATGAGAGGGATTCTAGCTGTGTCATTAGGTGAGAAGTTTATATATATATGTATTTATTGATGAAGAATTCTCCAAAGTAATGTGTTGTGTTTTGATATCCGTCTATCTCTTGGATGCAGGGCGCATAGAGGATCCCAACACAGAGAACTTTACGCATGCTGTTTTGATGCGTTTTCAGCAGAAAGACGACATTGCAAAGTTCCACAGTAGTCCCTACTACTACAAAATTCTCGATGAGCACGTAAAACCCGTTTCATATGTACGCCTCAGCATGTAATCTTCTTTCTGGTTCTTACAAAATTCTGACTATTTGTTGTCCATTGCATTGTGAGAGTCACTGGTTGGATAACTTACAGGGCTCGGTTTCTGTAGATTTTGAATCTGAAGTTGAAGATGACATTATCCCTCTCTTCCGTCGGGGAGAGGTAATTCAAGATGGCATCAAGCTGGAGCTCAAATTGTTATTCTTTGGTTTGGTCTTGTAAGATATTCCACAAACTTTGTTTGTGAGCCTAAGTTTGCTTCTTCCAACAGGATTTTAACTATGGAGTGGAGTTCATGCTACTGATATCTTTCTTGGAAAGTGCATCTGGAGATTCAGTGGAGGATGCATTAGCTTCTCTTCAGAGGTTCATCAGTCAATGCAGTTCTTTCATTGTTCAGGCAACCTTAGGTATGACAAAATGGTATCTGTGTCATTTCTTCCGACACATTTTCACAAAACTTTCCATTTTTCCTCAATCTCAGATAATAAAGTGTGATGTTTTACATGTACCAGGCTGCTGTCTGAATCATATGGACAGTGGTTACAGTCATGCTGCAGTTATCCGTTTTCCGTCATGTAAGTGATCAATAATTCTAATTTGTCCTTGAAATTAAAAATCCATATAAATGCAGAACAAAGCTGGATAATTTTCTTTTTTAGAAAATGGGATAAACCTGGCCTCTACATCCAATTGGATGTACGCAGCCAACAAAGCTGGATTATGGACAGATTGTGTATCAAAAAGGCTCCTTAGTGAATTTATTTGTTTCCTGCAGTTGATGACTTCAAGATATTCAGGGAGGGGATGGAATACAAGGATGTAAGGCTTCTCTACTTGCATGAATTCACATTTGATATCTGGACAAAAAAAATGATAGAAGCAAATAACTGTGAAAATTGGTCTTGCTTCCTGTTCAATTCCTTTCTGGCAAATTTCAGAACCTGCTGTTGTATACAGAAACAATGGGCTGGTTGACAGTTTTGTGGGAGGGGGTCTCTTACCCTAACCTATTGCATTGGAAATAATAAACATGAATCGAACTAGATTTACATAATTATGATACACTTGTAACTAGTAGAGGAATGCTTGAACACTGAATTATTGCACCAAAATATAGCCCTTAGTTGAGTTGTTTACAGGGAGCAAATATGTACATGCATGCACTCACTCTGTTAACAGCTACATGATGTGAAGTACTGAAAATTGACAATGCCTTGTGAAATACAGATGTGGGCATCAACATTTCAACCGATTGTGGAGAAATCTCTTGAGCTACACTTCACAGTTGATCCCGTGGGTAACCAGCTGATGTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA011693