Os12g0414900

From RiceWiki
Revision as of 10:28, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0414900| Description = Zinc finger, RanBP2-type domain containing protein| Version = NM_001073179.2 GI:297613064 GeneID:4352068| Length = 5...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0414900

Description

Zinc finger, RanBP2-type domain containing protein

Version

NM_001073179.2 GI:297613064 GeneID:4352068

Length

5926 bp

Definition

Oryza sativa Japonica Group Os12g0414900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:12928617..12934542

Sequence Coding Region

12928617..12929154,12930491..12930672,12931591..12932091,12934354..12934542

Expression

GEO Profiles:Os12g0414900

Genome Context

<gbrowseImage1> name=NC_008405:12928617..12934542 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:12928617..12934542 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggttccccggcgagggctcagccttcctcgtggcgcagcgcggggcggccgccgccgcagcagcagtggtcctgcgccacctgcacgctcgacaaccccggccactcccgcgcctgcgacgcctgcggcaactcgcgacccgtggaggtcgacggcgacgccgtcgccaaagcccagaccccaactctcccgaccatgtcgacccctccggcgagggcctcgacttcttcgggttgcggggcgggccggccgccgactgagcggaagtggtcctgcgccgcctgcacgctcgacaaccccggccactcccgcgcctgcgaggcgtgcggcaactctcgccccatggaggtagtcgccgtcgacgacgacgacgaggacgccctggacctgggcgccctcgccggcgcctcgttcctcccgctccagcggcgctccatgaagagggagcgcgcggcgtcgccggaggtcgtgggagtgtgcgccgacgagggagacggcgccaagggcggggaggataagcccgccaagaagaaaggtgcagattttgaaaacaaagtaattttccttatctcttctaaatggcacgactcatatgtggagctgcaggaggttacaccaaacatatatctgcttctacaaaaatctgactggtggcaagaataccgatgctcgctgtcgaatagcatggctatgcagcggaaatattactgcatgcagatgagcaaattgcctgttgagtcttttgactgcactccattttccaactcaataatgggaagagaactgtgtgtagcacatgtcaaaactggaggtgcagttaagctagtgctggccactagccaccttgagagtccaatgcctgggcctcctacttgggatcagatgtacagcacggaacgagttgctcaggcaaacaaatctctcaaaattttgggatccttccgcaatgtaatattttgtggcgatatgaactgggatgacaaaggagatgggcccttccccctaccagctggctggaccgatgcttggattgagttgaagccgggtgaagatggctggacttatgacacaaaagctaacagtatgctatcagccaaccgtaagttacagaagagattggaccgattcgtgtgcaagctggcagatttcaagattaacaacatccagatgatcgggaagaatgcgatacctggtctctcatatgtcaaggagaagaagttgcagagtgaggaggcgacggcggtgagcaggacctcgggggcactggcgttcacggccgcgatgcttggtagagttggcttgtggcaaaacaggggagcggtagagcagaggcagagaatggtggcgatgacggcgagctccggcgtgcaatcacagtgtaggattccgctgttctttccacggtga</cdnaseq>

Protein Sequence

<aaseq>MGSPARAQPSSWRSAGRPPPQQQWSCATCTLDNPGHSRACDACG NSRPVEVDGDAVAKAQTPTLPTMSTPPARASTSSGCGAGRPPTERKWSCAACTLDNPG HSRACEACGNSRPMEVVAVDDDDEDALDLGALAGASFLPLQRRSMKRERAASPEVVGV CADEGDGAKGGEDKPAKKKGADFENKVIFLISSKWHDSYVELQEVTPNIYLLLQKSDW WQEYRCSLSNSMAMQRKYYCMQMSKLPVESFDCTPFSNSIMGRELCVAHVKTGGAVKL VLATSHLESPMPGPPTWDQMYSTERVAQANKSLKILGSFRNVIFCGDMNWDDKGDGPF PLPAGWTDAWIELKPGEDGWTYDTKANSMLSANRKLQKRLDRFVCKLADFKINNIQMI GKNAIPGLSYVKEKKLQSEEATAVSRTSGALAFTAAMLGRVGLWQNRGAVEQRQRMVA MTASSGVQSQCRIPLFFPR</aaseq>

Gene Sequence

<dnaseqindica>1..538#1875..2056#2975..3475#5738..5926#atgggttccccggcgagggctcagccttcctcgtggcgcagcgcggggcggccgccgccgcagcagcagtggtcctgcgccacctgcacgctcgacaaccccggccactcccgcgcctgcgacgcctgcggcaactcgcgacccgtggaggtcgacggcgacgccgtcgccaaagcccagaccccaactctcccgaccatgtcgacccctccggcgagggcctcgacttcttcgggttgcggggcgggccggccgccgactgagcggaagtggtcctgcgccgcctgcacgctcgacaaccccggccactcccgcgcctgcgaggcgtgcggcaactctcgccccatggaggtagtcgccgtcgacgacgacgacgaggacgccctggacctgggcgccctcgccggcgcctcgttcctcccgctccagcggcgctccatgaagagggagcgcgcggcgtcgccggaggtcgtgggagtgtgcgccgacgagggagacggcgccaagggcggggaggataagcccgccaagaagaaaggtttcttttttttttttgttttgatcttgtatatttgcgaatcgttcgattggggactttgttcacgaatgtgcaaagaatcgcttctccattcattacgtttctaggggctttgttctttcatgttctgtgcgggtcgggttcagggagtagcagacaaattgccattgtttctgttgttgctgacttactgtgatttgctatagtatgtagcgggtaggaaaatgttgtggcgctgcatgtcattaccagagttattattagctagatttgatcagacaatgcaccaaggtgtatctgttccgttccctgatggactacaaaagaatgtggtataattagcaataggaagtcactgccttgggcctttcagtggtatctgctagaaaggagtagtaatggttttgcatgtcgtattgctatcatttcgaagttcgaattgagacttgagagtggcaaataacgaaatttctccatgggtttggattcactgcaaatcactaggaaaattgatatacaatggtataatttttactctactttgggttgtgtgaattgtgctaaagtattgatatggtcgacatttatacgacaaaccccttagttttatttacccgtgatgctagttgttactagtattggttaaaatttgtatgtcttgtttcaaccaactttacggagagtgcttcaatatatcataaactcaaagaatgttggctatcggttatactgcatagacatttatcctttttccttcatatacaagcatgtgcagttatttagttttattttctctgtctgcagttatttgttcccacatagcttatatactgacaacacattgctggtaattgtgttgatatttatcaatgacacactgctggtaattgtgatgctatactgttttcttgaactgaaaatttgatactgttattcccttatccctgaaatcatgaatatatgtcagcttttgctaatagttttttttttttggtcttaaataagttgatatcttgtagtcaatgtggcccacttttttgtttgtgtaaactagtctacaatatatattttgattatatctttgtaatagtgacataactagttaattatgccagttagtagttggttatggttttcaagttgttgctaatacattttttgcttctgatttgttattgtcactaacacagcatgtgctgagattattttggataagaagaccttcaaaatcatgacatacaatgtctggtttcatgaggatttggaattgtgtagaaggatggatgctcttggggatcttattaagaaccacaaccctgaccttatatgcttccaggtgcagattttgaaaacaaagtaattttccttatctcttctaaatggcacgactcatatgtggagctgcaggaggttacaccaaacatatatctgcttctacaaaaatctgactggtggcaagaataccgatgctcgctgtcgaatagcatggctatgcagcggaaatattactgcatgcaggtttgtttccactaatcccatggatacatatataaatataattgttcttattctatttattacaaatgtaatattttctttttaaatttttcattctccatgatgcatgtaaccatgggcttatgtggagatagtaaaattgatgaacaatgcaagattattaaagtactttacatgaaactagccaagtgtttgtgctctatgatgaaattaaaaaagaaaaaaaaacatgagaatggcattgttaaatcttgtattgggaacaaaggcttatagcagagaaatattatagtagaattggattatggacagaggatgatcaaacttgttcttgttccctatgtgctacttaaatctatcttgcctgaaaaggagtataactttctatttcagacatgtgatctgtaaaactccgcaagtatcgaactatacaagagctgtgaaacatattatgaaaaaaaaaacataaaatggtttggtttatcacagtttttgttagttccagtttatgaagctgatttttctactgtggataattagaacagaaataaactaaaaatcccatcagaaattcgctgtagaaatttgatagtctgttctatagatatttacatgcttttatgtatgtttgtgcacaaattttaagacttctactgcacattttatgtaatttgatgttatgtaatttgttatgttggcacctaagttagtagggtgttacctcgaattttggagttgctacctcaatgggtaacggtagcaacctctcatactatcttttgtgctttgaagtgttttgtgggaatccttgtgcttgtcttggtacctcagctttgctattatttctgaactgtgaatactttttcagtaagagtttattaattcctaataatgtgattcaatttcaaacatatgcagatgagcaaattgcctgttgagtcttttgactgcactccattttccaactcaataatgggaagagaactgtgtgtagcacatgtcaaaactggaggtgcagttaagctagtgctggccactagccaccttgagagtccaatgcctgggcctcctacttgggatcagatgtacagcacggaacgagttgctcaggcaaacaaatctctcaaaattttgggatccttccgcaatgtaatattttgtggcgatatgaactgggatgacaaaggagatgggcccttccccctaccagctggctggaccgatgcttggattgagttgaagccgggtgaagatggctggacttatgacacaaaagctaacagtatgctatcagccaaccgtaagttacagaagagattggaccgattcgtgtgcaagctggcagatttcaagattaacaacatccagatgatcgggaagaatgcgatacctggtctctcatatgtcaaggagaagaaggtccgcaaggaagttcgcaaactggaacttcctgtcttacccagtgaccactttggacttgttttgagcattactcttgaaagctgaaaaatatctgattacagtggtcctacatttctttgatgtaggtacatcttttgtgtaatagcacaactctttcagttgatcttaatatgactcaaaggtaaaatgtaggcctctgccaatttggatgcctctaattttgtgaagtttaagcagaggcgtccgttggctatatagaaatgccaactgaatttatacccatgttggcttgcttattgctgcttatcactgcataaatgttctttcgtgttcctgagttgagcccgtgcttgccatgcctttccatctgatctgttattgtttcgctgcttgtactggacattatgtcggttgaattatgtgatcgcattcgatctgggctggttgtcggacagcttatgtagaacgatgcggtcgagatacaattgatataaattgctgcctttgctctggaaaccagtcattttgaagaatggcaacgtttgtgaaatacaatcattaagtactactctctctttgtttcatattataaatcgttttgactttcgtcaaagtcaaactacttcaagtttgaccaagtccctgtttgattcagcttaggattattataatctgtattatttgaagtaagctaaaacaaataaatagattattatgatagattattataatttgtaagccagattattatagtctacaaatctcctttggaagagctttttctagattattgggtggctaaagacccactacccttagatgccttcaataatatagagaaacaaacaacttgcagcttattttatgctagcttattataatccaatttagagtaatctgatttaataatttagattataataatctttaagctgaaacaaacagggcctaagtttatagacaaatatagtaatatttataataccaaagtagtttcattgaatatattttcattataaatttatcttgggttgggaatgttaacatttttttctataaacttcgtcaaatttgaaacagtttgactttgactaaagtcaaaatgacttataacctaaaatcgatggagtaaattatattgtaatatatagttatataatctgatgagattacaatattataaagagtaaatttcaccggaaaacatatatttttataaaattatcgtagattacacatttaagttaaaatatcctacaattcatcgtataaacattaagggcccctttgatttgtaggaaaacatagaaattttcaaggatttcaatcttattaaaaaatttcctataaagacttgttaacaaatgattaaatctatcaaacccttttgaaataactatgggatgaacaatcctataaatattttgaagaaaatttaggaaatgctctaacatttggaaaatttcctttgagtctctcattcgacatttgtgtttttctgtggtcctattaaacggtaattcttttgtttttcctgcattttacaatcttctgctttacatttacattccaatcggactacggtaacttattgtgaattgataattcctctcaggaatgttgcttatacttgtagtacatttgtgcttcatgttatttctcttttactatatctaatgtaccaacataacaaagacaccaacagaccaacacaattcatgctacgtaagtgtaattaatctaaaaaattttttgtcaagacatgatcattggaaactgggaaactattttaatcccttaaggggatatcctctcgttctttacatatcacttaaatggttatgaaaaaaattgaaaacaattaagaaggtgtatcaacatgtcatttaatactccacaaatatacaagttcaaattcaacttctacatttcataacgacaaaaaaattaaaccgtagctagttaaggtatattcggagtcaaatttgttttttttattgccggatgtagaagttgaatttttacttgcatgtttgtgaagtgatatatcacatgttaatacatcttatcaatttttttcagattttttcataaccatttgagtgacatgcaaacaataagggatgtcccctcgaagtatcaaaatcctcttccttcgaaacttcatattattaacaaatggagtgttcaacgtgatgccagaaacaggtgtggataagttgctcaactggtccatttccatttttgtgctttgcacagttgcagagtgaggaggcgacggcggtgagcaggacctcgggggcactggcgttcacggccgcgatgcttggtagagttggcttgtggcaaaacaggggagcggtagagcagaggcagagaatggtggcgatgacggcgagctccggcgtgcaatcacagtgtaggattccgctgttctttccacggtga</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0414900, RefSeq:Os12g0414900