Os12g0428200

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Revision as of 10:29, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0428200| Description = Glycoside hydrolase, family 9 protein| Version = NM_001073200.2 GI:297613082 GeneID:4352105| Length = 3823 bp| Defi...")
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Gene Name

Os12g0428200

Description

Glycoside hydrolase, family 9 protein

Version

NM_001073200.2 GI:297613082 GeneID:4352105

Length

3823 bp

Definition

Oryza sativa Japonica Group Os12g0428200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:13810301..13814123

Sequence Coding Region

13810301..13810898,13811010..13811176,13811318..13811684,13812283..13812468,13812813..13812849
,13814063..13814123

Expression

GEO Profiles:Os12g0428200

Genome Context

<gbrowseImage1> name=NC_008405:13810301..13814123 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:13810301..13814123 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtacgaggcgtccaccaatgccggggacaccggcggcaaggtcggcaccgacaccttcgccgtcgggacggccaaggcgaacctcgcgttcgggtgtgtcgtggcgagcaacatcgacaccatggacgggtcttccgggatcgtcgggctagggaggacgccgtggtcgctcgtcacccagacgggtgtcgccgcattctcctactgcctggcgccacacgacgccgggaagaacaacgcgttgttcctcggctccaccgcgaagctcgccggcggcggcaagaccgcctcgacgccgttcgtcaacatctccggcaatgacctgagcaactactacaaggtccaactcgaagtgctgaaagccggcgacgcgatgatcccgctgccgccgagcggtgttttgtgggataattatgaagtgaaattttgtggtgttttgcttgaatttcaggttcttttgtcgagggtgagcttctttgcttcgcaaggatcagatgttgcacaagacgatgtccttgggatgtacaagcagactgctgatgccgtcatgtgcattctcctgccggattcagagaccgccgctttcacaacaaaaggtggtttgctgtatgttgctgagtggaactcactccagcacccggtggcatcggcgttcctcgccgccgtttacagcgactacatgcagagctccaggaagacggagctaacctgcagtgggcagggcttctcgccgagcgacctgcgcaaattcgccaagtcccaggcggattacttgctgggcagcaacccgatgaagattagttatctggtcgggtacggcgaccggtacccggagcgggtgcaccaccgcggcatatctatcccggagaacgtcgacaccggctgcgacagccacaagtggctggagacgtccaagcctaacccaaacgtcaccaccgacgcgctcgtcggcggtctgtacaagaacaacagcttcgttgacgagcgcgacaacgtgatgcacaacgaggccaccacctacaactgtgccctcgtcgccggcttgctctccgccctcgtctccaccacctccctccagcggcagcaccgtactgcaggcggcggtggcggcagtggcggtggcggtggtggccatggcccattcactgcatccagtcttcctctccaaatcggtagcgagcaacccaccacggcaccaccagcagctctcttccccagttcttctcctcgatacatctattcatccatccattgccggcgaggcgacacacacaccaacaactccgccgccgccgtcgtcaacctcgccagccccggaactggagcctcgggagatcaaggatgtgctacgatccttgatgttgttaacagtgagatgttatcacttactcctatcagaataggagctacatga</cdnaseq>

Protein Sequence

<aaseq>MYEASTNAGDTGGKVGTDTFAVGTAKANLAFGCVVASNIDTMDG SSGIVGLGRTPWSLVTQTGVAAFSYCLAPHDAGKNNALFLGSTAKLAGGGKTASTPFV NISGNDLSNYYKVQLEVLKAGDAMIPLPPSGVLWDNYEVKFCGVLLEFQVLLSRVSFF ASQGSDVAQDDVLGMYKQTADAVMCILLPDSETAAFTTKGGLLYVAEWNSLQHPVASA FLAAVYSDYMQSSRKTELTCSGQGFSPSDLRKFAKSQADYLLGSNPMKISYLVGYGDR YPERVHHRGISIPENVDTGCDSHKWLETSKPNPNVTTDALVGGLYKNNSFVDERDNVM HNEATTYNCALVAGLLSALVSTTSLQRQHRTAGGGGGSGGGGGGHGPFTASSLPLQIG SEQPTTAPPAALFPSSSPRYIYSSIHCRRGDTHTNNSAAAVVNLASPGTGASGDQGCA TILDVVNSEMLSLTPIRIGAT</aaseq>

Gene Sequence

<dnaseqindica>1..598#710..876#1018..1384#1983..2168#2513..2549#3763..3823#atgtacgaggcgtccaccaatgccggggacaccggcggcaaggtcggcaccgacaccttcgccgtcgggacggccaaggcgaacctcgcgttcgggtgtgtcgtggcgagcaacatcgacaccatggacgggtcttccgggatcgtcgggctagggaggacgccgtggtcgctcgtcacccagacgggtgtcgccgcattctcctactgcctggcgccacacgacgccgggaagaacaacgcgttgttcctcggctccaccgcgaagctcgccggcggcggcaagaccgcctcgacgccgttcgtcaacatctccggcaatgacctgagcaactactacaaggtccaactcgaagtgctgaaagccggcgacgcgatgatcccgctgccgccgagcggtgttttgtgggataattatgaagtgaaattttgtggtgttttgcttgaatttcaggttcttttgtcgagggtgagcttctttgcttcgcaaggatcagatgttgcacaagacgatgtccttgggatgtacaagcagactgctgatgccgtcatgtgcattctcctgccggattcagagaccgccgctttcacaacaaaaggtaagttccatgattcagaagcttaaaaaaaacaatctcaggttcaccatttgtgtagctggtaataacaatgcagtagtaattcagatggcttgcaaaattttatttcaggtggtttgctgtatgttgctgagtggaactcactccagcacccggtggcatcggcgttcctcgccgccgtttacagcgactacatgcagagctccaggaagacggagctaacctgcagtgggcagggcttctcgccgagcgacctgcgcaaattcgccaagtcccaggtagtaacaagattcagaattgtccatgatccagagttcacaattattcagactaacatatgttcagagagaacataaatgttaagaaatgcagtacgtaaatgtgatcacgcactgatcagtgatctttgttcttggcaggcggattacttgctgggcagcaacccgatgaagattagttatctggtcgggtacggcgaccggtacccggagcgggtgcaccaccgcggcatatctatcccggagaacgtcgacaccggctgcgacagccacaagtggctggagacgtccaagcctaacccaaacgtcaccaccgacgcgctcgtcggcggtctgtacaagaacaacagcttcgttgacgagcgcgacaacgtgatgcacaacgaggccaccacctacaactgtgccctcgtcgccggcttgctctccgccctcgtctccaccacctccctccagcggcagcaccgtactgcaggcggcggtggcggcagtggcggtggcggtggtggtaggcgacgccccacacagccacggcgccgtcatcagcagcccgcctcctcccgcgcaccgccccttctccccgccggtcgccttgtccccatcggctgccggcaccgccccttctcccttccccttgtcccagttggccagcgtgccgcccttctccccgccagtcgccgtccgtcgcgtcatcctcctcgccgtcagcttgcagagaagtgagagagagagagatgaggaagagagaagaggggaaagagggagaagaggctgacgtgaacatctgacatgtgggacccacatggatcccacgctgactcagccgccacgtagaccaaaaccagggtcaaaaccaccaaaggatcttaggtgaccagtttgcatagttaagggatcccacatatctagttttgcggttcgaggatgttttttatcccgatgataagttgagggaccttcggtgtactttttccttgatttaataggggtgaaaacgtataagggattctcaaaaaaaaaaaaaaacgtataagggagtaagtagacttattcgtttgctgaacaaaagaggaaccaccaatgggcctatctgctaacttcactaggccatggcccattcactgcatccagtcttcctctccaaatcggtagcgagcaacccaccacggcaccaccagcagctctcttccccagttcttctcctcgatacatctattcatccatccattgccggcgaggcgacacacacaccaacaactccgccgccgccgtcgtcaacctcgccagccccggtaagccccagaatcgagtcggtatgattcgagtttccacgagcatatgttctgctccagcggggccgttggctaccaaagccccgaatatttctgcgggaatccgaccggctttctgagtttatatataattcgtaatttcatatggcttaggttattgattagacgcttcggggtcgcggagatgaactgcgagacctgtcagctgaaggagctggtcagatccaaattccaccactttttattgttcttttcgttttcttttttttctttcatggaattattggtgtggtttttgtgtttacttttttttttttgttgtgctgctttgttttgggtcgcaggaactggagcctcgggagatcaaggatgtgctacgatgtgagtcttctcttccccatctatatctccttacttttcttaaggagtgcccctttgtttcgatctgcagtcccatgaaatcgttgttttgggttgaattgtttgtggactaaaatatttctgtaatgttgagaatttcaaatcatagttgggatgttgagtatgttgcatccgaacacttcttcctatttgcataatggaaaattattggatgaatgatgtatgagcaaatgaacaaagaattggatatttagttagtgttattgttaggttacttattacttgggaaaattgtaaccacattgggatttttttttgttttgcaacatatatatacatatttgtttactgttggatggcagtaccaagttcacagcttttttgcacctatggtttgtcatgaattttgcgataaggatttgtgaaactagtgtttatagttctgcacttctgctgttatacagtgtaattagattacgccatgatctgatttcattagatactgtttgatttcattagatcattccgtaaaacagatgataacctagttcaaattcctttatgctttgaggtttgagcggcatggaatcctgttatagtgttatgctgttgctggccaccgcataactcaatgaacttcgcttttgttcgggcttaatattccgttatcattgttccacctaaacaaacaaagtaatcttccattacacgagcaatacccatcccattttgattatttgttaagtaataaactgagaagtcgagagcagcttatccttcctagcatcatctaatctttgctgattgatatgctgcttttggctgtgctgcaggcattttgcataccatattcttccacagaaccttgagccttgttcggcccaaagactttgattgtgatttctttgagattacctatgtgagtatttatcctgtataaaggtcttgaactatttaatgtactgaatctatttgggttttctatctaatgtttgctggcactaagcacatttcatggctatcaaatgaagtatgaaatttattacctactgcaattgtctagcaaatgaagtatgaaatttatttcctactgcaattgtctagtacttgtagcagtgaaatatagcttagcaattcgaatatcctatctgtgctttatgtttgctgctgatttggtcttaattattgcgattgtccaccctgaactgtgtagccttgatgttgttaacagtgagatgttatcacttactcctatcagaataggagctacatga</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0428200, RefSeq:Os12g0428200