BGIOSGA012113

From RiceWiki
Revision as of 09:42, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA012113| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA012113, complete gene.| tag = OS-RPA1...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA012113

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA012113, complete gene.

LocusTag

OS-RPA1

Ensembl Transcript ID

BGIOSGA012113-TA

Ensembl Protein ID

BGIOSGA012113-PA

Length

3070

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:6480929..6483998

Sequence Coding Region

6480929..6481074,6481213..6481359,6481459..6481683,6481788..6481965,6482080..6482347
,6482436..6482538,6482634..6482758,6482843..6482921,6483002..6483146
,6483252..6483412,6483502..6483622,6483804..6483998

Genome Context

<gbrowseImage1> name=IndicaChromosome03:6480929..6483998 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:6480929..6483998 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATTCCGACGCGGCACCGTCAGTGACGCCGGGGGCGGTGGCGTTCGTCCTGGAGAACGCGTCGCCGGACGCGGCCACCGGCGTGCCGGTGCCGGAGATCGTCCTCCAGGTCGTCGACCTCAAGCCCATCGGCACCCGCTTCACTTTCTTGGCGAGCGATGGCAAGGACAAGATAAAGACGATGCTTCTCACCCAGCTCGCTCCGGAGGTGCGCTCCGGCAACATCCAGAATCTCGGCGTCATCCGCGTCCTCGACTACACCTGCAACACCATCGGCGAAAAGCAGGAAAAGGTCTTGATTATCACGAAGCTCGAGGTCGTGTTCAAGGCGCTGGATTCCGAGATCAAGTGCGAGGCCGAAAAGCAAGAGGAGAAGCCGGCGATTCTGTTGAGTCCCAAGGAGGAATCCGTGGTTCTCTCCAAGCCCACGAACGCGCCGCCACTTCCTCCGGTTGTGCTGAAGCCCAAGCAGGAGGTGAAGTCCGCGTCCCAGATCGTGAACGAGCAGCGCGGCAATGCTGCTCCTGCGGCGCGGTTGGCCATGACGAGAAGAGTTCATCCTTTGATCTCCCTGAACCCCTACCAGGGCAACTGGATCATCAAGGTGCGTGTCACAAGCAAGGGCAACCTGAGGACGTACAAGAATGCTCGTGGTGAAGGCTGCGTCTTCAATGTGGAGCTCACTGATGTGGATGGCACCCAGATCCAGGCAACCATGTTCAACGAGGCTGCCAAGAAGTTCTATCCGATGTTTGAGCTGGGGAAGGTGTACTACATCTCCAAAGGATCTCTCAGAGTCGCCAACAAGCAGTTCAAGACTGTCCATAATGACTACGAGATGACCCTGAATGAGAATGCTGTTGTTGAGGAAGCTGAGGGCGAAACTTTTATCCCACAGATTCAGTACAACTTTGTCAAGATTGATCAGCTAGGGCCATATGTTGGTGGCAGGGAGCTAGTAGATGTTATTGGGGTTGTTCAGAGCGTATCTCCTACTCTTAGTGTTAGGAGGAAGATTGACAACGAGACGATTCCAAAGCGTGACATCGTTGTAGCGGATGACTCGAGCAAAACTGTAACCATATCTCTTTGGAATGATCTTGCCACAACTACTGGTCAGGAGCTCTTGGACATGGTAGACTCTGCGCCTATCATTGCGATAAAGAGCCTAAAAGTATCTGACTTCCAAGGTTTGTCTCTGTCAACTGTGGGGAGAAGTACAATTGTAGTGAATCCTGACTTGCCTGAGGCAGAACAGCTCAGAGCTTGGTATGACTCTGAAGGCAAGGGTACTTCAATGGCATCAATTGGTTCAGATATGGGCGCATCAAGGGTTGGTGGCGCGAGATCCATGTACAGTGATAGAGTTTTTCTGTCTCACATCACAAGTGACCCCAACTTGGGTCAGGATAAGCCTGTGTTCTTCAGTCTGAATGCCTATATTAGCCTTATCAAGCCTGACCAAACCATGTGGTACCGAGCTTGCAAGACCTGCAACAAGAAGGTGACTGAGGCAATGGGATCAGGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCTCTGTTCAATGATCAGGCAGAGAGGATTGTTGGCTGCAGTGCAGACGAGCTTGATCGGATTAGGAAGGAGGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTCACCTGTTCCGCGTCAGCGTAACTCAGAATGAGTACATGAATGAGAAGAGGCAGAGGATCACTGTGAGGAGTGAAGCTCCGGTAGACCACGCAGCTGAAGCCAAGTACATGCTCGAGGAGATAGCCAAGCTGACAGGTTGCTAG</cdnaseq>

Protein Sequence

<aaseq>MDSDAAPSVTPGAVAFVLENASPDAATGVPVPEIVLQVVDLKPIGTRFTFLASDGKDKIKTMLLTQLAPEVRSGNIQNLGVIRVLDYTCNTIGEKQEKVLIITKLEVVFKALDSEIKCEAEKQEEKPAILLSPKEESVVLSKPTNAPPLPPVVLKPKQEVKSASQIVNEQRGNAAPAARLAMTRRVHPLISLNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLATTTGQELLDMVDSAPIIAIKSLKVSDFQGLSLSTVGRSTIVVNPDLPEAEQLRAWYDSEGKGTSMASIGSDMGASRVGGARSMYSDRVFLSHITSDPNLGQDKPVFFSLNAYISLIKPDQTMWYRACKTCNKKVTEAMGSGYWCEGCQKNDAECSLRYIMVIKVSDPTGEAWLSLFNDQAERIVGCSADELDRIRKEEGDDSYLLKLKEATWVPHLFRVSVTQNEYMNEKRQRITVRSEAPVDHAAEAKYMLEEIAKLTGC</aaseq>

Gene Sequence

<dnaseqindica>1..146#285..431#531..755#860..1037#1152..1419#1508..1610#1706..1830#1915..1993#2074..2218#2324..2484#2574..2694#2876..3070#ATGGATTCCGACGCGGCACCGTCAGTGACGCCGGGGGCGGTGGCGTTCGTCCTGGAGAACGCGTCGCCGGACGCGGCCACCGGCGTGCCGGTGCCGGAGATCGTCCTCCAGGTCGTCGACCTCAAGCCCATCGGCACCCGCTTCACGTGAGTGTTTCTTGTGTGCGATTCCTCTTTGATGAGCGTTCTTGCGATTCCGCGCCACGGAAAAACTCGCCCAGATCTGGGTGGGTTCTTGTTCTTCCTCAGCGACGAGTTCCTCACGATCTCTCTGTTGCGTTGCAGTTTCTTGGCGAGCGATGGCAAGGACAAGATAAAGACGATGCTTCTCACCCAGCTCGCTCCGGAGGTGCGCTCCGGCAACATCCAGAATCTCGGCGTCATCCGCGTCCTCGACTACACCTGCAACACCATCGGCGAAAAGCAGGAAAAGTACAGATCCGCGCGCTCCACCTGTCTGATTCTTCAGACCACTCGCGTTTCTTTGTCTTCTGAAATCTGAATCTCTGGTTTTGTTCATATGCGTCACAGGGTCTTGATTATCACGAAGCTCGAGGTCGTGTTCAAGGCGCTGGATTCCGAGATCAAGTGCGAGGCCGAAAAGCAAGAGGAGAAGCCGGCGATTCTGTTGAGTCCCAAGGAGGAATCCGTGGTTCTCTCCAAGCCCACGAACGCGCCGCCACTTCCTCCGGTTGTGCTGAAGCCCAAGCAGGAGGTGAAGTCCGCGTCCCAGATCGTGAACGAGCAGCGCGGCAAGTAAGCGATTCTTGCGAGATCCCCATCTCTCTTGTTCAGTTGTTTCTGATGCAGAATTGTTGGTGAGAGTAACCTGCCGATTCTTGATGCCTTCCTGTTTGCAGTGCTGCTCCTGCGGCGCGGTTGGCCATGACGAGAAGAGTTCATCCTTTGATCTCCCTGAACCCCTACCAGGGCAACTGGATCATCAAGGTGCGTGTCACAAGCAAGGGCAACCTGAGGACGTACAAGAATGCTCGTGGTGAAGGCTGCGTCTTCAATGTGGAGCTCACTGATGTGGATGTAAGTGCAACCTACCGTGAAATGTTTATTCCGTAGGATGTAATTGCAGTTCATGAGCAATTCTGAATTCTTGTATGTTGATTGATGAGTTAATTTTGTTGGATCTGTGTACAGGGCACCCAGATCCAGGCAACCATGTTCAACGAGGCTGCCAAGAAGTTCTATCCGATGTTTGAGCTGGGGAAGGTGTACTACATCTCCAAAGGATCTCTCAGAGTCGCCAACAAGCAGTTCAAGACTGTCCATAATGACTACGAGATGACCCTGAATGAGAATGCTGTTGTTGAGGAAGCTGAGGGCGAAACTTTTATCCCACAGATTCAGTACAACTTTGTCAAGATTGATCAGCTAGGGCCATATGTTGGTGGCAGGGAGCTAGTAGGTAAGGCAATAGTGCTTTCAGTTCAGTGATGTGTTCTTGTTCCTACTTTGTGAATGTAGTGTTCTGACTAGTTTTACCCTACTTGCAGATGTTATTGGGGTTGTTCAGAGCGTATCTCCTACTCTTAGTGTTAGGAGGAAGATTGACAACGAGACGATTCCAAAGCGTGACATCGTTGTAGCGGATGACTCGTAAGCATCATTTGGCTTGTTAACTCCTTTCTTTTGATGATGTGAATGCTCTTTATGTTTTATGTGCTGATAACTTACATTTAATCTGATGGCAGGAGCAAAACTGTAACCATATCTCTTTGGAATGATCTTGCCACAACTACTGGTCAGGAGCTCTTGGACATGGTAGACTCTGCGCCTATCATTGCGATAAAGAGCCTAAAAGTATCTGACTTCCAAGGTATGTTTGTGTTACCTTCCTGCATGTGGTAGGATCTGAATTGGCGATTATGTGCTAACAGCATTACTACTATAATGTCGACAGGTTTGTCTCTGTCAACTGTGGGGAGAAGTACAATTGTAGTGAATCCTGACTTGCCTGAGGCAGAACAGCTCAGAGCTTGGTATTGTCCTAATCTCAAACACTCCTTTTATTATCTTTCAAACTATCTACTTTGGTCCTTGACGTTATTTTGGCAAACAGGTATGACTCTGAAGGCAAGGGTACTTCAATGGCATCAATTGGTTCAGATATGGGCGCATCAAGGGTTGGTGGCGCGAGATCCATGTACAGTGATAGAGTTTTTCTGTCTCACATCACAAGTGACCCCAACTTGGGTCAGGATAAGGTAAAATCTTGGAATCTTTGAAAGAAAATGGAATTGTTCTTGATGTTTAGTTTATTAGCACTTTCTAGTTGTGATTGTCCTAAATTTACTTGTTATGTTTTGCAGCCTGTGTTCTTCAGTCTGAATGCCTATATTAGCCTTATCAAGCCTGACCAAACCATGTGGTACCGAGCTTGCAAGACCTGCAACAAGAAGGTGACTGAGGCAATGGGATCAGGATACTGGTGTGAAGGGTGCCAGAAGAATGATGCTGAGTGCTCACTGAGGTAAAACTTTGGGCTGAATTACACCGTGCATGCTTGAATTTGAGATGATACAAAGCCAAAGCTAATGCTACACTGGTTCCTTTCTTCAGGTACATCATGGTCATCAAGGTCTCCGACCCTACTGGTGAGGCCTGGCTTTCTCTGTTCAATGATCAGGCAGAGAGGATTGTTGGCTGCAGTGCAGACGAGCTTGATCGGATTAGGAAGGAGGTAATTTTGCCAATCCCACAGTAACTTTGATTCACCTTCGTGTAAATTCTAGGCTTTAGTTTAACTTTGTGCGAATTCTAGGCTTCAGTTCAACTTTGTGCAGATTCTAGGCTTTAGTTTTCTACATGCAACTTCTTGCTATTTAAGCTGTGCCTAAGATTGTTGGTCTCAATTGTTTCAGGAGGGTGATGACAGTTACCTTCTCAAGCTGAAGGAAGCTACTTGGGTTCCTCACCTGTTCCGCGTCAGCGTAACTCAGAATGAGTACATGAATGAGAAGAGGCAGAGGATCACTGTGAGGAGTGAAGCTCCGGTAGACCACGCAGCTGAAGCCAAGTACATGCTCGAGGAGATAGCCAAGCTGACAGGTTGCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA012113

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA012113&oldid=56936"