BGIOSGA012524

From RiceWiki
Revision as of 09:48, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA012524| Description = tRNA-specific adenosine deaminase| Definition = Oryza sativa Indica Group BGIOSGA012524, complete gene.| tag = OS03G0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA012524

Description

tRNA-specific adenosine deaminase

Definition

Oryza sativa Indica Group BGIOSGA012524, complete gene.

LocusTag

OS03G0321900

Ensembl Transcript ID

BGIOSGA012524-TA

Ensembl Protein ID

BGIOSGA012524-PA

Length

1858

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:13023336..13025193

Sequence Coding Region

13023336..13023380,13023474..13023511,13023628..13023694,13023935..13024094,13024180..13024276
,13024569..13024672,13025153..13025193

Genome Context

<gbrowseImage1> name=IndicaChromosome03:13023336..13025193 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:13023336..13025193 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGCGGCGGCGGCGGAGTTTATGGAGCTCGCGCTCGAGCAGGCCAAGTTTGCGTTGGACAACCTTGAGGTCCCTGTAGGATGTGTGATTGTGGAGGATGGGAAGGTGATTTCATCCGGTAGCAACAAGACAAATGCCACCCGGAATGCTACAAGGCATGCTGAGATGGAAGCAATTGATATCCTGCTTAGGGAGTGGCAGGGCATGGGACTTGATCAGCCACAGGTCGCGGAGAAGTTTGCAAGATGCGATCTTTATGTCACATGTGAGCCTTGCATAATGTGCGCAATGGCGTTGTCGATACTTGGAATAAGGGAGGTGTACTTTGGTTGTGCTAACGATAAATTTGGAGGATGTGGATCAATCATGTCATTGCATCAGAGTTCTTCTGCTGAACTGTCAGGGGAGGAAATTCCCGGGCCAAAAGGTTACAAATGTACTGGTGGGATCATGGCGGAGGAGGCAGTGGCTCTTTTTAGAAATTTCTACGAGCAAGGGAATCCAAATGCGCCAAAGCCTCACAGACCTGTCCGTATAGCTCCCCAGTGA</cdnaseq>

Protein Sequence

<aaseq>MAAAAAEFMELALEQAKFALDNLEVPVGCVIVEDGKVISSGSNKTNATRNATRHAEMEAIDILLREWQGMGLDQPQVAEKFARCDLYVTCEPCIMCAMALSILGIREVYFGCANDKFGGCGSIMSLHQSSSAELSGEEIPGPKGYKCTGGIMAEEAVALFRNFYEQGNPNAPKPHRPVRIAPQ</aaseq>

Gene Sequence

<dnaseqindica>1..45#139..176#293..359#600..759#845..941#1234..1337#1818..1858#ATGGCGGCGGCGGCGGCGGAGTTTATGGAGCTCGCGCTCGAGCAGGTATGGCTGAAATCTCCAGCTTGATTTGCTGGGAAGAACACGTTTTACGCTGCTACGGTGTTTCTGGCGCTGAATTCTGGATCGTTTTTGCAGGCCAAGTTTGCGTTGGACAACCTTGAGGTCCCTGTAGGGTATACCCCTGCTTCGTTTCATACATAGGAGTTCATCCTTGGTTCTTGCTGTGCTAACTGCTAGTAACTCCTAACTGCTGCTGGCTCTACTTTTTTTTGTTATTCTGTCTTGGTAGATGTGTGATTGTGGAGGATGGGAAGGTGATTTCATCCGGTAGCAACAAGACAAATGCCACCCGGAATGTATGCATGCTCTTACATCTTCGGTTAGGAATATTTTTGCTCTTAGATTATTATTATTATTATTTCTTTTGAACGAACCAGCATTAAACATGCCAATTTCATTAAATAGAGCAGGAGTAAAAATTTTGTACAGGTGTAAAAGAAAACCTGTAATTGATACCAACTGCATTTACATGTAAAAGATTTTTTTTTGCTCTTAGATTAAAGCTGTAATTTGATTGTGCCTGTACCGATTCTAAGGCTACAAGGCATGCTGAGATGGAAGCAATTGATATCCTGCTTAGGGAGTGGCAGGGCATGGGACTTGATCAGCCACAGGTCGCGGAGAAGTTTGCAAGATGCGATCTTTATGTCACATGTGAGCCTTGCATAATGTGCGCAATGGCGTTGTCGATACTTGGTCTGAGATGTTTTATCTTTATTGTGTTAAAAGTATGTAAGAGCATATGGATTTATGCTTTTTAACATGTTCATTCTTTTGACAGGAATAAGGGAGGTGTACTTTGGTTGTGCTAACGATAAATTTGGAGGATGTGGATCAATCATGTCATTGCATCAGAGTTCTTCTGCTGAACTGTCAGGGTGAGGGAGCAATGCAACAAGCAGCAGAAAGCTGTTTACTCATGATAACATGTTGCTTTTAGTGCTTCATTAGTTGCCCATTACCCTAACATTTCAATTCAATATCATGATTTTTGCAAACTTGCACATGCTTAATATTTTCATTTTCTTGCACGTACAACATAGTTATTGAGTTCTTTACATCATTAATCCTGAACTCTGTTAGTTGTTTATTGAGTTCTTTACATCATTAATTCTGAACTCTGTTAGTTGTTTATGGCACTCCAACTTCAAACTGTTTGTCTCTTGCTAGGGAGGAAATTCCCGGGCCAAAAGGTTACAAATGTACTGGTGGGATCATGGCGGAGGAGGCAGTGGCTCTTTTTAGAAATTTCTACGAGCAAGGGAATCCAAATGGTATGTTCTTTTCCCTGTATTTCTTCTTCTCCATTGTCTAGAATTATTGCTTCTGCATAGAATTCTCATGTAGGTTCTATGGTAGAATATGCTCTCTTTTTTTCTGGTCCATGAGATATTTGCAAGTACATGCACCCAAAGTGTTAATCAAGAGTTAGAATACCTCTATCTCCCAATTAGCACTTAAAATAACTCCTCTCTCCTAAGGACCAGAGGAAAAACTCTGTTCTTCACACTGCATTTACATGTGAAGAACAGTTGGTATCTTAAGATATTTGCTTGGAATACTTGTGCAATCAATATGATATCATTTTAAAGTCACCCCGTTGTTACCACAAATTATAGTGTAAGATTGAGAATCATTTACTGATCTTGTGGGATCAATAAAGTGGATTGGCCTCGGATCATTGGTCCAATCATTCATTTTAATCCTCTGCGTTGTGAAGAAATTTGACATTTTCTCGCTTGCACACATTTCAGCGCCAAAGCCTCACAGACCTGTCCGTATAGCTCCCCAGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA012524