Os12g0454300

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Revision as of 10:29, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0454300| Description = Protein of unknown function DUF889, eukaryote family protein| Version = NM_001073254.2 GI:297613120 GeneID:4352165| ...")
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Gene Name

Os12g0454300

Description

Protein of unknown function DUF889, eukaryote family protein

Version

NM_001073254.2 GI:297613120 GeneID:4352165

Length

4891 bp

Definition

Oryza sativa Japonica Group Os12g0454300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:15877000..15881890

Sequence Coding Region

15877000..15877006,15877103..15877177,15877260..15877354,15877410..15877493,15877592..15878144
,15878700..15878778,15878864..15879000,15879151..15879253,15879341..15879614
,15879707..15879857,15880293..15881890

Expression

GEO Profiles:Os12g0454300

Genome Context

<gbrowseImage1> name=NC_008405:15877000..15881890 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:15877000..15881890 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacacatgatattcataatagactgaaaaaagcgctagataatcctcactgcataattccacaggatcacttgcttaaccttctattacatgagcttgctactgtatttgcaaaaagtggtggcgacataaaggattttaacttgccacacccaacctccattgcacatatcgctggtggtaacagattaattgatgaggaacttacaattgatccacttatgctaagcatgcatgcagattctttgataacacaattgaatactgagcaaaaacatatttttgatgttatatcttctcgtgttgctcataatcaacctggtttcttctttgtgtgtggccatgggggaaccggcaaaacatttctatggaatgctatcattgcaaaacttagatcacaaaataaacttgtgcttgctgtagcgtcatcaggggtggcatctttactgctacctagaggtaggacagctcactcacgatttaaaatacccattgatattgatgagacaagcatttgtaacattaaacgaggaagtatgcttgctgaacttttaattgaagcttcgcttattatatgggatgaggctccgatgacacataggcgatgttttgaagcgttggatcggactttacgtgatatcctttctcaaacgtgtgctacaaattctattataccttttggaggaaaacccgtcgttctaggtggtgatttcagacagatattgccagttgttcctaaaggttcccgccatgctatagtcaatgcatcaatcacaaattcagatctatggaaacatgtaacagtcttaacgatgaatataaatatgagactacttaacacaaacctagagcaaaagcaaaaagatgagctgcatgattttagtaagtgggttttagctattggtaatggcacactacctatgaccacgaaggaaggtgaaagctatccatcatggatcgaaattcctcatgacttacttattataactgatggtgataaaatatctgctattgtgaatgaagtgtattgtgattttcttgcatcatacatgaatcctgaatacttagcttctcgtgcaattgtttgtcctaacaatgctacagtagatgaaataaatgactatgttattggtttagtaccaagagaagcaaggatatacctaagctgcgatacaatatcaaagtgctctgaacaaattccagattttgacttgctatatccacctgagtttcttaattcaataaatgttgcaaacttccctacacatagacttatcctcaaagaaggtgttgttgtcatgttgctcagaaatctaaaccaatcaattggtctctgcaatggaacaagactattaattgttgctttaggtgatagaattcttcaatgcattatactcactggctcaaacattggtgatactgtttacatacctcgaataacactgagtactactaaaatgaaatggccttttacattgcaaaggagacaattccctattcgagtttgctatgcaatgaccatcaataaaagtcaaggacaaacactacaacgagttggtgtgtaccttagaaaacctgtttttacacatggccagttattccaaatggcgcacatactcatctcacagctgtcatgtggtgattcaaacatacgaattaaggcaagagtttctaggctatgggactttcatgatctcaatgatgacagaaaaattgtgcacactgatcttgtcttactggatgaaacggggaacagcatacatgctcaaatgtatcagcatgtaatagtgaacttgaaacctcttcttcaagaaggaaaagtttactacattgattcattcactgtcagatatgcaaataggacatataggccagttgcgcatagccaaatgatcctattcactaaatggacaactttagaagaatgtgtcgatgtgcctgctgatttccctgctataacattttcattgacaccttttggagatgttccctctcttgtggacaaaaacatcttttatgttgatattatgggtgttatcactgaaattggcacaacgtctactgtacgtcctcagtcaaggaacactgacagtttaaaaagaacactacaaatatgtgatgcaagcaattccacactacctctcacactttggggagagcgagcaactgctttcgatgctgagaatatctacaatgctggccaaagacaacctcaggtggttgtgtttgttggcacgcttgtcaagaactacaaaggcttagggcttacactgactggaagctccccatgcaaatggtacattaaccttgaaatacctgaagtagtggaactgaaagaaaggtacaaattagtgctaattgctggagatactactgcagatgcaacatttattctttttggaaaaactgcgcaacgcatcatacgaaggccagtggaatctctgatcgaagaaaatccaccggacagtgaattcattccaagggaaatcttagcacttgttgacaatggttttctatggaatctcagcttcacaaaggatattaacagaagcgaagaaactctccaggttaatagtgttatatcctctggtccagcaaatcaaccactgctgcttatgtcgccaagtccttcacagccaacatcagcaattgtatcggcaagctcaagtagttctctccagacagcaccaacaccaagtgaaacaagcaccgaatcgcaattagccatcataccaacacagggcacttcaacaccaacaaaatacactcctgctactgcaacagatgagacaccaactagcaaatcaagctccttagtatttaccaaaaaaagcattattgtctcaggctactctatgccatctcacactgcaaagacctctactgatactaaggcaaaaattggcactcatcatgaagagaagatctcacaaagtgcatctttaactacaattgttccccgtgatacttcggataagtgcttcttctacaaggcaaaggtcaccactgaatctccagatgagtctccacaggcagatccttcactggcgccaaagagcacacccaaaaaaagaggtagacctacagaaaccaccacaattgccaaaaaattgttcaaggatagtacccagaagaaacccactgacagtgaatga</cdnaseq>

Protein Sequence

<aaseq>MTHDIHNRLKKALDNPHCIIPQDHLLNLLLHELATVFAKSGGDI KDFNLPHPTSIAHIAGGNRLIDEELTIDPLMLSMHADSLITQLNTEQKHIFDVISSRV AHNQPGFFFVCGHGGTGKTFLWNAIIAKLRSQNKLVLAVASSGVASLLLPRGRTAHSR FKIPIDIDETSICNIKRGSMLAELLIEASLIIWDEAPMTHRRCFEALDRTLRDILSQT CATNSIIPFGGKPVVLGGDFRQILPVVPKGSRHAIVNASITNSDLWKHVTVLTMNINM RLLNTNLEQKQKDELHDFSKWVLAIGNGTLPMTTKEGESYPSWIEIPHDLLIITDGDK ISAIVNEVYCDFLASYMNPEYLASRAIVCPNNATVDEINDYVIGLVPREARIYLSCDT ISKCSEQIPDFDLLYPPEFLNSINVANFPTHRLILKEGVVVMLLRNLNQSIGLCNGTR LLIVALGDRILQCIILTGSNIGDTVYIPRITLSTTKMKWPFTLQRRQFPIRVCYAMTI NKSQGQTLQRVGVYLRKPVFTHGQLFQMAHILISQLSCGDSNIRIKARVSRLWDFHDL NDDRKIVHTDLVLLDETGNSIHAQMYQHVIVNLKPLLQEGKVYYIDSFTVRYANRTYR PVAHSQMILFTKWTTLEECVDVPADFPAITFSLTPFGDVPSLVDKNIFYVDIMGVITE IGTTSTVRPQSRNTDSLKRTLQICDASNSTLPLTLWGERATAFDAENIYNAGQRQPQV VVFVGTLVKNYKGLGLTLTGSSPCKWYINLEIPEVVELKERYKLVLIAGDTTADATFI LFGKTAQRIIRRPVESLIEENPPDSEFIPREILALVDNGFLWNLSFTKDINRSEETLQ VNSVISSGPANQPLLLMSPSPSQPTSAIVSASSSSSLQTAPTPSETSTESQLAIIPTQ GTSTPTKYTPATATDETPTSKSSSLVFTKKSIIVSGYSMPSHTAKTSTDTKAKIGTHH EEKISQSASLTTIVPRDTSDKCFFYKAKVTTESPDESPQADPSLAPKSTPKKRGRPTE TTTIAKKLFKDSTQKKPTDSE</aaseq>

Gene Sequence

<dnaseqindica>4885..4891#4714..4788#4537..4631#4398..4481#3747..4299#3113..3191#2891..3027#2638..2740#2277..2550#2034..2184#1..1598#atgacacatgatattcataatagactgaaaaaagcgctagataatcctcactgcataattccacaggatcacttgcttaaccttctattacatgagcttgctactgtatttgcaaaaagtggtggcgacataaaggattttaacttgccacacccaacctccattgcacatatcgctggtggtaacagattaattgatgaggaacttacaattgatccacttatgctaagcatgcatgcagattctttgataacacaattgaatactgagcaaaaacatatttttgatgttatatcttctcgtgttgctcataatcaacctggtttcttctttgtgtgtggccatgggggaaccggcaaaacatttctatggaatgctatcattgcaaaacttagatcacaaaataaacttgtgcttgctgtagcgtcatcaggggtggcatctttactgctacctagaggtaggacagctcactcacgatttaaaatacccattgatattgatgagacaagcatttgtaacattaaacgaggaagtatgcttgctgaacttttaattgaagcttcgcttattatatgggatgaggctccgatgacacataggcgatgttttgaagcgttggatcggactttacgtgatatcctttctcaaacgtgtgctacaaattctattataccttttggaggaaaacccgtcgttctaggtggtgatttcagacagatattgccagttgttcctaaaggttcccgccatgctatagtcaatgcatcaatcacaaattcagatctatggaaacatgtaacagtcttaacgatgaatataaatatgagactacttaacacaaacctagagcaaaagcaaaaagatgagctgcatgattttagtaagtgggttttagctattggtaatggcacactacctatgaccacgaaggaaggtgaaagctatccatcatggatcgaaattcctcatgacttacttattataactgatggtgataaaatatctgctattgtgaatgaagtgtattgtgattttcttgcatcatacatgaatcctgaatacttagcttctcgtgcaattgtttgtcctaacaatgctacagtagatgaaataaatgactatgttattggtttagtaccaagagaagcaaggatatacctaagctgcgatacaatatcaaagtgctctgaacaaattccagattttgacttgctatatccacctgagtttcttaattcaataaatgttgcaaacttccctacacatagacttatcctcaaagaaggtgttgttgtcatgttgctcagaaatctaaaccaatcaattggtctctgcaatggaacaagactattaattgttgctttaggtgatagaattcttcaatgcattatactcactggctcaaacattggtgatactgtttacatacctcgaataacactgagtactactaaaatgaaatggccttttacattgcaaaggagacaattccctattcgagtttgctatgcaatgaccatcaataaaagtcaaggacaaacactacaacgagttggtgtgtaccttagaaaacctgtttttacacatggccagttgtatgttgcaatttcaagagctacaagtcgatcaggtctaaaaatattaattgagaacgacgatggttcatgcggaaaccatacaaggaatattgtttacagtgaaatactcactgctacatttccagcggtgcttttcttaacactgccctatacattgtattcatctttttcttagcatcatttagtaatgcaaatccattccaattgcaggctccgccgttgcatacttagctattttggcctaaacagggacaaattttgtacaaacattttggaataaatatatgtcttcagcagctatcatgtgctatatacccgctgcaatattcccctcttaatattatatgtactgtctttgccatcactgttttctttcattagcagtaactatatagattaatatgtattaaaattgtttactacctattgcagattccaaatggcgcacatactcatctcacagctgtcatgtggtgattcaaacatacgaattaaggcaagagtttctaggctatgggactttcatgatctcaatgatgacagaaaaattgtgcacactgatcttgtcttactggatgaaacggtaacaatttacctactgcaattttataccagaattttctttattgtattaatcattttattgacaatattctctatatttaaaaaatataggggaacagcatacatgctcaaatgtatcagcatgtaatagtgaacttgaaacctcttcttcaagaaggaaaagtttactacattgattcattcactgtcagatatgcaaataggacatataggccagttgcgcatagccaaatgatcctattcactaaatggacaactttagaagaatgtgtcgatgtgcctgctgatttccctgctataacattttcattgacaccttttggagatgttccctctcttgtggacaaaaacatcttttatgttggtaataacctatccataccatcttactacatatacacatctttcgcttctttacaacatttattaaatttataccacatacaaacagatattatgggtgttatcactgaaattggcacaacgtctactgtacgtcctcagtcaaggaacactgacagtttaaaaagaacactacaaatatgtgatgcaaggttagttccatgaaactcagtccttaccattctactttccaaatatttgttttaacgaacattcatactcacttttacacatgctttgaatatctaataatttgttccaattataattacaccaatttttctattaatccacaacactagcaattccacactacctctcacactttggggagagcgagcaactgctttcgatgctgagaatatctacaatgctggccaaagacaacctcaggtggttgtgtttgttggcacgcttgtcaagaactacaaaggcttaggtacatttgtacctacattttcgcttactatgttatgtataatacaaaattaacaatatttcaaaattcctctattcttctacagggcttacactgactggaagctccccatgcaaatggtacattaaccttgaaatacctgaagtagtggaactgaaagaaaggtgatcttgttatcttccaagtattcctgcaatctatttacattgcacaatttgcaactattaggatgacatccattaattctagacacaatctgtttgcatagctttagcaccaactttcagccaatcaggtggaacgacgatcctcctgcaggattcaaccaaagcaacccacaagaaaagacacttaaagacattcttgaccttaatcctcataaacataaggtttgtcttacctcttaattaactatcaacaacattttcctggattttacagtcgtattatcaacagaattttttcactcttatcctttgcaggaagcagcttcatagtaaatgtggttgttaaaagaatatgcaacgaaaactcctggtggtacaattcatgtcacctatgctacaaaacctcaaaaccatatggctcagcctacaagtgcaccagttgttcctatataggaataccagatcaaaggtcaatagcgcagtttaattaattctacatgtctaactatttatcactcacaaatttctatattcatttaaatttacatgcaggtacaaattagtgctaattgctggagatactactgcagatgcaacatttattctttttggaaaaactgcgcaacgcatcatacgaaggccagtggaatctctgatcgaagaaaatccaccggacagtgaattcattccaagggaaatcttagcacttgttgacaatggttttctatggaatctcagcttcacaaaggatattaacagaagcgaagaaactctccaggttaatagtgttatatcctctggtccagcaaatcaaccactgctgcttatgtcgccaagtccttcacagccaacatcagcaattgtatcggcaagctcaagtagttctctccagacagcaccaacaccaagtgaaacaagcaccgaatcgcaattagccatcataccaacacagggcacttcaacaccaacaaaatacactcctgctactgcaacagatgagacaccaactagcaaatcaagctccttagtatttaccaaaaaaagcattattgtctcaggctactctatgccatctcacactgcaaagacctctactgatactaaggtatccttctcaatacctactcttgcacttcctctgctataaacaaattttcctaaatatttggagatacactctgacctattgaccaactatgcaaggcaaaaattggcactcatcatgaagagaagatctcacaaagtgcatctttaactacaattgttccccgtgatacttcggataaggtattcatgctctttcttttcataacctaatccatcaatttctgaaaaaaaaaagtgcttcttctacaaggcaaaggtcaccactgaatctccagatgagtctccacaggcagatccttcactggcgccaaagagcacacccaaaaaaaggtctgtaaagctttcagttcaaagttacagtaatagacatttcttgcacacattgtatttgacatgtccttataatgaacagaggtagacctacagaaaccaccacaattgccaaaaaattgttcaaggatagtacccagaagaaacccactgacaggttaattctgaataactcagctcacctctccacacatacacattaattctttagtaaacttcactaaatttctaaattcatcattcatttctgcagtgaatga</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0454300, RefSeq:Os12g0454300