BGIOSGA012835

From RiceWiki
Revision as of 09:53, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA012835| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA012835, complete gene.| tag = OSJNBB0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA012835

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA012835, complete gene.

LocusTag

OSJNBB0074M06.9

Ensembl Transcript ID

BGIOSGA012835-TA

Ensembl Protein ID

BGIOSGA012835-PA

Length

5521

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:18461617..18467137

Sequence Coding Region

18461617..18461985,18462091..18462198,18465768..18465935,18466027..18466198,18466885..18466958
,18467057..18467137

Genome Context

<gbrowseImage1> name=IndicaChromosome03:18461617..18467137 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:18461617..18467137 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCCTCCTCGCTCGCCGCGCGCCGCCTCCTGTCCCGCTCCGCCGCCGCCGCGTCCCGCCGCCTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCGCCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCGTCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGCCGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTCCACGTGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGCGTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAATCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAAGCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCATGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGA</cdnaseq>

Protein Sequence

<aaseq>MASSLAARRLLSRSAAAASRRLVPCASSATPRAAPAALRRFFSAEASTPPPTPPTPPLPPPPLEPTVEPPKSEGASSSSASSSAGAGGAHRSAPGASAGARRAGGTGYEEEQEKVLRASLLHVPRMGWSESAMIAGARDVGVSPAIVGAFPRKEAALVEFFMDDCLQQLIDRIDAGEGELLKNLVLSERLSKLVRMRLEMQGPYISKWPQALSIQSQPANISTSLKQRAVLVDEIWHAAGDAGSDIDWYVKRTVLGGIYSTSEVYMLTDNSPDFRDTWTFVSRRIKDALDLQKTFQEAAYLAEAVGAGMGGSLQGVLNRLFKK</aaseq>

Gene Sequence

<dnaseqindica>1..369#475..582#4152..4319#4411..4582#5269..5342#5441..5521#ATGGCCTCCTCGCTCGCCGCGCGCCGCCTCCTGTCCCGCTCCGCCGCCGCCGCGTCCCGCCGCCTCGTCCCCTGCGCCTCGTCCGCGACCCCGCGCGCTGCCCCCGCTGCTCTGCGCCGCTTCTTCTCTGCGGAAGCCTCGACGCCGCCACCGACGCCGCCGACGCCACCACTCCCGCCGCCGCCTCTGGAGCCCACCGTCGAGCCGCCCAAGTCGGAGGGCGCCTCCTCCTCTTCCGCCTCGTCTTCCGCCGGCGCCGGAGGAGCCCATCGGTCGGCGCCGGGGGCCTCGGCGGGGGCTCGCCGCGCCGGCGGCACGGGCTACGAGGAGGAGCAGGAGAAAGTGCTCCGCGCGTCGCTGCTCCACGTGGTATCGTTTCGGGCTCCCTCGAGATCTGCTTCCATTTCCGCCTATCTAGCAGCGTAGTGAGTAATTTTCTGAACGTCTGGTTGATTGTTTGGTTGTGCGTTGTAGCCAAGGATGGGGTGGAGCGAGTCAGCCATGATCGCCGGGGCGAGGGACGTGGGCGTGTCGCCGGCCATCGTCGGTGCTTTCCCGAGGAAGGAGGCTGCGCTCGTTGAGGTAACTTTGCTTACGGTGGTGGGACTATCTTGTGTATCTTTTTCAATCGGTGGTGATTCGCAATGTTCTTGGCAAGAAAAGAATATTCTGGGATGCTAGTACATTGTACTGGAGAGGTAAGGAGGGGACATAGTGATAGTGTACTCGAGGTATGATGATTTGGATATGCATCTATTGAATTTGGATCAGAACCTATAGGTAGCTAACACAACGAATGCTGTCAGTCATTGCCTCATTGGTATGATAATTGTTGTGCACCTAATGGATGATGCTCGTGATGAACATGAGTGCTTCAAGTTTGTGATGTGATTCACGACTTCTACTTTGTGAACTGATATTAGCACTTGTAGTTGTAGAATGTAGATAAACCTTCCAGGCAAGCGTTGTTGTACTACATGGATAAAAGCATGAATAATTTGTACCTAGAAGCTACTAGAGTGTTATAACTGTGATATATGGATTATTTCACATTCATAATAGGGCTTGTGGTATCTGTTGAGAATATCTTAGATTATTCTTAAAGTTGGTTCATGACTGAAATGAATAGATTTTGGATTAAACTTAATTACGTTCATATCTTGATTCTGAAAATGCTAATCAATTGTAAATAAGGTGATCATAAAAGTCAGACCTGCTTGATATCCAGACCCACTTTAGGTTTGGGAATGTTGTGGTGTTGTTTTTGCTTGGAAGTATAGTGACATGTATTTCGGGAATACATAGACAAATCCCTATCTAAATTTGGTAGTAGGGGTCCTGTGCACTTAAATTGCACATTTTTATTGTTGAATATACATGCTTTGTGTTCTACAAAAGAAAACTGCATTTCCCCCAGTTTCTAGTTTCAACTTCTAATTGAAGCATTGATTTTTCTTTACACTTTTGGTATTGACTTAGTATCACTACAAATTAAATATTGGCCTCTCCTACTAAAGTGCTCATTTTATGTGAAGTTATGAACAGTTCAATGTTTTCTGAGTGACAATTTTATTGAATTGTTATAAATGCATGACCATCATAGCAGGTAAAATCTGGGGAAATATTGATGAAATACAAGCAATGTAACCCATTTCTCCATATGCACAAACCATGGATCTTTTTCGGCAATAGTGCTATTATATTGTGTTATGTTTCATATTTGGTTATTAGTGAGCATTGTTTCATGAAAGCATTGGCATGCAGATGTTTTCATTCTGTCTCATGCTGTAGCTGGGTCAGTATGGTGGATGCCAGTCCCATAGGGCAATATCTGTTAGTCAGCTATAATGAGGGAAGTGCGGGGTCCCATTAATGAGGGAAGTGAGGGATGGGTTAGTCAACTATGATGCCAGTCCCATAGGGCAATATCTGTTAGTCAACTATAATGAGGGATGGGTTACTTTATAGTAAGATGAGATTTGGTATGTCTTAGGATGAGGGAAGTGGAACTTATGGAACCAAGAGCTGGGAGCATACCAGATGCAACCCATCATTATGATGCTATCATTCAACCCTGTTTCAGTTGGGGGTACCAAATCAATCTGAAAAGCTCACATAAGAATCAATGATATAGGCTATGGAAATCTGGCACTTCAAAATTTCAGCTGCGAACTCAAAGTGCCTTTGAAGAAAACAAAAATACAGGAACAATAGGATTTACTTAATAACCTTGATTTATTTTACTTGTTACTCTTAATTCCACGAACTTGAAATTTATACATAGGTGACAGAGAGTATACTTGTCAGTACATTTTCCTGGACTATGACATGTTGATTGGGTACCTCAAAAAAACTGAGTTGCATGATTATACTATGCTAAGTTGTTTAATGGTCAGCAGCTCAGTTTTGAGAAACACTGTAGAGGAAAACATGTTTTTTTTTCCCAGAAGACTCCTTGATCCTTAAATAAACACTATTCCTCTGGCTCTGACACCTTTCCTGCTTCACCATGGAAAACATCACAAATTACATAGGGATGCCCCTTGCTCAGCCAATAGTGCTGCATCTTCCTTCAAGAATTCATCATTCTAGTTGTATATTTTCAATCACTATGAATGTAACTGTTTAATTTGAAAACCTGGTTGTTGTCACAGCTGGCCATGACAAACTTGCTACAATTCTTCTCATCCTCATCAATTGTGAATCGTCACCAGCTGCTATGCTTGAGCGAAACAGCCTAGATTGTTAATCTGACTTCTTAGATAAGAGTTCAGATTGTGAAATGTTTCTGTGAGAATTAAGTGCTTCCGTTTGTGCAGTAAGGTCGATGTTTATTTGTTAACTTTCTCTTAATCTTAACTAGGGGATATCCCCACGAAATTTTGCGTGGACTAGTTGAATTGAATTGGATTTAACTATATTTTGTACACACCAGATATTAGAAGTCGGATACTCAGATTGGACTTATACAACTCTTCTCTTCTCTTTCTATAGATACAATTGTACTTTCTGTACAGCTATTACTACCAATTTACACCGTTATAATTTGGTCCCACCACGATCTAATGGCATAGATTTTATACTTTTTCTCCGATTAATATGGTAATCTCTAGGCATACTTTGTATACAACTATTGCTACCAATCTACACTGTTATAACTTGGTCCCACCATGATCTAATGGCATAGATTTTTCTCTCTGATTAATGTGGTAATTTCTAGGCCTCCAGAGCAAATGTGGTGCCTCTTTTTAGAGTTATCTTCATAATATAATAGATAGATGGATGCCCTGCCAAGTCTTCTGCGCATTCCCGGAGAAAACATAGTTGTGCATCCTTTTCTGTATGTGCATGTCTGGGCAACATAGGGTGCTACTCATCAATTTTTTAAAAATAGATGCTCTTTGAAAGAGGGCAACAAAGAAGAGGGAAAAGGATAGACAATTTGTGGGAGTAGCCACAGAATATGAAGGAACTCAGCAAGAAGGAAAACGAATCACATGTTGCATTGTTAGTGGCTAATGGTTAATCCACTACCAAACGTTTCTAGAGTTGAAATACTTAAAAATAAATCTGAGGGTACATTACAAAGTCTCCTGTTTAAGAGTTGTGACAGTATTTGGCTGTAAATTTATTTATGCATTGTTTGTGACTCTCTAGTGAAGCCCTTGCTGTTATCTTGAAGAAACAAAGTAGACAGGTTTCCTATCAATACTAAGAATGTTCGAATTATATTTATCCTTATTTTTTCATTTTTATTACTATCAATGTTGCAAAATAGATGAAGTAATTTGAGTTCATCTAGTTTTTCTCTCCTTTTTTTGTAATGGTGATTTGGTGCCCAAAACAAATTTTCATGATTGCGCCTTCTATTATGGCTTCTTCCCACGTTCAAACATAGTATGACCTCTTAACTTAAACAGGTCTGCCAGGTAATTGAACTAAAATACTCGATAGGAATTCTAGGGAGATGTCTTAGTTTACTTAGCCTACAATATGTTTTGGGATGTTCCAAAACCTTCTGAAAAACAGTGACAGTGTAGCAGACTCATGACATAAAAATAGAAGTAGTAATCTTTTGCACGTTAACAGTGTATACTATGAAACAAAGCCTCAATGAGCCTACTCTGACCGTTCTGTTTACTTATGTGCAGTTTTTCATGGATGACTGCCTTCAACAACTCATTGATCGCATTGATGCTGGAGAGGGAGAGCTGTTGAAGAACTTGGTACTGAGTGAGAGACTTTCCAAACTTGTCCGAATGAGGCTGGAAATGCAGGGACCTTATATATCAAAGTGGCCTCAAGCTCTCAGTATCCAAGTACTCCATTATCACCACCTCTTATTTTCCTTTGCATTTAACTAAATCATCTGATCCTTGTATGTCTTAACTTTATTTTTCTGTTTGACAGTCCCAACCAGCAAACATTTCAACAAGTTTAAAGCAGAGAGCTGTCCTTGTTGATGAGATTTGGCATGCTGCTGGAGATGCTGGATCAGATATTGATTGGTATGTGAAGCGTACTGTGCTTGGTGGTATCTACTCTACCTCAGAGGTGTATATGTTAACTGACAATTCTCCAGGTTGGCTTTCCTAAGCTTGATAGTTCAATTCCGATTCCTTTTATGCTTAATGTTTAAAACCGATTTTAATAAAGCGTCCTTTTGGAATACTTAGACAGCGAGTATTACAACAGAAAATGTTCCATTGCCTGAATCTCAATTTAAACTGTAAATGGCTCTAAATGCAGATAATGTACCAGCTTTAGTTTTCTGTTTAAATAAATCATAGTGAACAGGGGTTGATATATATATTTTAAAAACCTTTTCTATTTGTTCCTTCCACCGTCTTAAAGATAGTTGTTTTGGAAGTTCAGAACTCAACATGGTAATGTGTACGCATAACGTAACAAAATGGAATCAGTAAATATCTGGGACCCTTATAGATCCTTATGTAGATATATATGTGGTTCTGTAAGGCATTTCATCCTTTTTGGTAGAAATATGGGCCTCTGTGCCCTTCAGTATCTAAAAGCTGAAAGCAGGATGAGAAACTTAAGGGCAATGATAAGGAAAGTGTATTATCTGTAACTAATGTGGTCTGTTACACGCATCCTCGTTCCTGATAGCATATACCTGTTGAGTGAACGTCTTCCTTTTTTCCTGCCTCTGAACATCATAGAGAACGATACCACGTTCACATTTTCTTCAAACGGCATTCGATATATACTTCTGTTGACCGTTTCCTCTTTCCTGTCAACGCTTGACAGATTTCCGCGATACATGGACATTTGTGAGCCGCCGTATCAAGGATGCTCTTGATCTTCAGAAAACTTTTCAGGAGGTATTAAGCACATCATGCTCAAGTCGTATGCTATTTTAGACCTCATCATCTCATTCTACGTTATCAACCTGCTGACCCGAAACGATCCTGTGTTGCAGGCCGCGTATCTAGCAGAAGCCGTCGGTGCAGGCATGGGGGGCTCCCTACAGGGTGTCCTGAACAGACTTTTCAAGAAATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA012835