Os12g0468600

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Revision as of 10:30, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0468600| Description = Metallo-dependent hydrolase, composite domain containing protein| Version = NM_001073283.1 GI:115488527 GeneID:435219...")
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Gene Name

Os12g0468600

Description

Metallo-dependent hydrolase, composite domain containing protein

Version

NM_001073283.1 GI:115488527 GeneID:4352197

Length

6350 bp

Definition

Oryza sativa Japonica Group Os12g0468600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:16851299..16857648

Sequence Coding Region

16851506..16851595,16851979..16852081,16852350..16852405,16852675..16852847,16853478..16853634
,16853989..16854132,16854669..16854818,16855597..16855755,16856969..16857141
,16857260..16857470

Expression

GEO Profiles:Os12g0468600

Genome Context

<gbrowseImage1> name=NC_008405:16851299..16857648 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:16851299..16857648 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcggcggcggcggtggctgacgaagtcaccgtgctccacggcggggtcgtcgtcagcatggacggcggcttccgcgtcttccaggacggcgccgtcgccgtcgccggggaccgcatcgccgccgtgggaccgtccgccgacgtcctctcgtccttccccggggccgcggcgacagtcgacctcgccggccgcatcctcctccccgggttcgtcaacacgcacgtgcacacgtcgcagcagctggcgcgggggatcgccgacgacgtcgacctgatggcgtggctgcacgggaggatctggccatacgagtcccacatgacggaggaggactcctacgcctccaccctcctctgcggcatcgagctcattcgatccggggtaacatgctttgcggaagcaggtgggcagtatgtttcagaaatggcacgtgcagtagagttgctgggattgcgtgcatgcttgacaaaatcaataatggattgtggtgatgggttacctccaaactggagctcttgttcaactgatgattgcattcagtcgcagaaagatctatacgaaaagcatcacaacacagctgatgggcgtatcaggatatggtttgggttgagacagatcatgaatgcaacggatcgtttactgcttgaaacaagagatgctgcacagaaactgaatactggaatccacatgcatattgcagaaataccctatgaaaatgagctggtaatgcagactaagggaattgatcatgggacagtgacatatttagagaaaattgattttctgaggagcaatttgctggctgctcattctgtttggttgaataagcctgagattgggcactttttaaaggctgatgttaaggtttctcactgccccgcatctgctatgaggatgttggggtttgctccaattagagaaatgctggattctggtgtttgtgtctctcttggtacagatggagcgccaagcaataacaggatgagcattgttgatgagatgtacctagcctgtcttattaacaaagggcgtgaggcgtacatcactggtacaacgaacccaactgctcttcctgcagagactgtattgaagatggctactattaatggtgcaaaagcagttctgtgggacgatgaaataggttcgctggaggttgggaagaaggcggacatggttgttgtgaatccacttatatggtccatggtcccagtgcatgactgcattgccaacatagtttactgcatgagaacagaaaatattgaatctgtaatgtgcaacggtcgatggattatgagggaaaagaagatcgtgaatttgaatgaggaggaggtaattgcttcagctgaaaaaatagcaagggaccttctagcgcgagctggcatcaacctacccaatcggatgaactacttgtga</cdnaseq>

Protein Sequence

<aaseq>MAAAAAVADEVTVLHGGVVVSMDGGFRVFQDGAVAVAGDRIAAV GPSADVLSSFPGAAATVDLAGRILLPGFVNTHVHTSQQLARGIADDVDLMAWLHGRIW PYESHMTEEDSYASTLLCGIELIRSGVTCFAEAGGQYVSEMARAVELLGLRACLTKSI MDCGDGLPPNWSSCSTDDCIQSQKDLYEKHHNTADGRIRIWFGLRQIMNATDRLLLET RDAAQKLNTGIHMHIAEIPYENELVMQTKGIDHGTVTYLEKIDFLRSNLLAAHSVWLN KPEIGHFLKADVKVSHCPASAMRMLGFAPIREMLDSGVCVSLGTDGAPSNNRMSIVDE MYLACLINKGREAYITGTTNPTALPAETVLKMATINGAKAVLWDDEIGSLEVGKKADM VVVNPLIWSMVPVHDCIANIVYCMRTENIESVMCNGRWIMREKKIVNLNEEEVIASAE KIARDLLARAGINLPNRMNYL</aaseq>

Gene Sequence

<dnaseqindica>6054..6143#5568..5670#5244..5299#4802..4974#4015..4171#3517..3660#2831..2980#1894..2052#508..680#179..389#agatctcatcctcatcatttggttagttggctgactccacacgcctcgccgtctcagtgtcgacagtgtcccctcccctcaatcatttcggtctccattccgagaaaaacaatccactagctcactagcttcgccggcgtacggacgcgcgccgcggggactggaggagcgcgcaaaaatggcggcggcggcggcggtggctgacgaagtcaccgtgctccacggcggggtcgtcgtcagcatggacggcggcttccgcgtcttccaggacggcgccgtcgccgtcgccggggaccgcatcgccgccgtgggaccgtccgccgacgtcctctcgtccttccccggggccgcggcgacagtcgacctcgccggccgcatcctcctccccggttggtttctagcattccccgcacacttccaccgattcgtcgattttaagctcttcccccaatcggaatttgtggctggatttttactgttttttgttgttcgattggggtttggtagggttcgtcaacacgcacgtgcacacgtcgcagcagctggcgcgggggatcgccgacgacgtcgacctgatggcgtggctgcacgggaggatctggccatacgagtcccacatgacggaggaggactcctacgcctccaccctcctctgcggcatcgagctcattcgatccggggtgagctaaccctcccctgactgacatcagttcagttcctctgatactacgatagtggaaattctcacgatagtgacactgtcaacgtgtttgctggaacctgtaacaaatttttcactgcttgattgcgattccatgactgaatttggcgcctagagcactttcagagaattgagcagtccatgcagtatatctgttgatgatgggtgtgcctgttagtgtttaaagggtgaccaaaatttcttgcatcttgatttagtttatattggacagtgttgggtatgatttgcattctcgttggagaaatttgcgaattgttagttttatgtccacgatgtggtggatgtggattgtcatgggaagtatgcacttatggtttctggggatgtcagagggagatgcagagctgtgaatgtactttggacaaacccagatagcatcttgcttgaatgtcctctgcatatttactgcattcgattgtttctttctgttatcgaacattgcattgtatagaaaggtggatttaacatgagcgaaatggtactatagtaatttcagaagtaaaatgtatggggtttctggcctcaaaagtatcaaatcctatgataacgctggttcacaatatctgaagatgttatttttcatttactactccaatggatcaaaacaatgtttagaaatcaacatctgaagttcttaatatcctttgtgctattaattgtattccattgtgctattaattgtattcatgattaaaggctcataggtttataatctggtagtatttgtgttatcatcatgctggacggatacagttatcttcttctgtagcctgtaggtttctttatatgaggtaaagttgattatatttgtgtttccttaaaacttctgtcacatctgtccagtcagtttattttctgtgaaagtccgaaggtcctgatattcttgaagataggggcatgaagaatccaaggattggataatcttaattttgtgttttgtttaactcaatctttcctacccttctgacccacactacatatgtttctcgtatatatgaaatgggctctgcaatataattgtgctgcacttgattcgtactttctcagtttgctgaataggatttatgttcaaactagtaaccacatgaagatctgtaactgcgaattagccagtgttcctaacatttttccctttaaaactcaaatgacaggtaacatgctttgcggaagcaggtgggcagtatgtttcagaaatggcacgtgcagtagagttgctgggattgcgtgcatgcttgacaaaatcaataatggattgtggtgatgggttacctccaaactggagctcttgttcaactgatgattgcattcaggttttcttctggcttggaacttatcctagttttgtttcacatcatttccttccatatgttgactacctgtaacgaatatccattttcttgaacattgtcacttgctgcttacccacttttttttttttgcttttaataaaatcatttactggatatctgaactcaagcatctttagtaaccacatgaggactatatgtcccattgttcccttatatataatgctaccatttagctctgtactaactgtcatacacatgcaaatggctttcaggacttatattatatatgatagaagttttttcctgaaataattcaaggcacaattgcagtaaaatctccgaagtcagacatgcaggatcttgaataggaagagttttttggggaaagaactcagtcttgcttatcagagaatcatattctttatctaggaacatgctgcatgcctgaaattcaacaatacctaactagtatctttgtccatataatgtccacaatgtaatgtaaagaagtccaaaacaacaaataaagagaaaatattcgtccacaatgtaatgtattcatttttgagccatttttccctttctttttttctccatgtcacagctgttaggaacttttgtttgatgttttgcaaattgagtctattcatatttggtagtttctgttttgcacaacttaagattcatgtaaatacagatatacatgtgtttgactgtttattcattgcatgcctgttttttattgatgcaagtgacaagttgcattgcgttgccacagtcgcagaaagatctatacgaaaagcatcacaacacagctgatgggcgtatcaggatatggtttgggttgagacagatcatgaatgcaacggatcgtttactgcttgaaacaagagatgctgcacagaaactgaatactggaatccacatggtacttatgtaaatcgatttattggtgcaaccaaatttatctgttttaagatagtgtgctgcgttatttgatccatacaattaaaaaaaaaactatttttcacatctttaatgttttaagtacaaagttaaaagtagccttcacattccattttgtgtggccaggaaggatcgtatttaccagagaaaaacagtccacaccacttatttttgcaaacatatattatacaaattgacattgatcatatatgttagggtcaatactacttacaattttttatgatctcattctcatatggatatatgtattttcagttatttactagaattttcttgcataggcagatataagcatatgtattgtgtatctagcctcacaattgcatgggggaattcagctaagttttcatattttcggtactgcattgagttcttttactgttttggtggtgctccctagaagttttgtacaataatagcttgttgcttaaatagcatcaataaatttcttactcgttcattttcacttctgtacagcatattgcagaaataccctatgaaaatgagctggtaatgcagactaagggaattgatcatgggacagtgacatatttagagaaaattgattttctgaggagcaatttgctggctgctcattctgtttggttgaataagcctgaggtgagtaaactttttcattatgaagtcttaccttttacattgtccgttgtctttgctacttactcctatgtaatatcaaaactatggtaaatactgtttctttctagttgtaagaagtcaccctaattttgcgcttgattacatcatgtagaagtcatcacttgacaaatcatgaatctgctgccacagctgtacaagaaatgtttcctttgtcacgtcagtctgttggattttgttaaattctatttggcattgtttggcatctctttcctgatagattgtctggatttttaaagatgtagcttctaataccattttttcaaagttttcaccttataaggttcttacatgcagattgggcactttttaaaggctgatgttaaggtttctcactgccccgcatctgctatgaggatgttggggtttgctccaattagagaaatgctggattctggtgtttgtgtctctcttggtacagatggagcgccaagcaataacaggatgagcattggtctgtttcagaaatccttaacacaaaacatattatgagctagaggcatgactaatgtcatgcaaaacaattcttatactatcaaatgtagattatatacatcttaattggatacaccttaacattttgcaactctctgtcaattaagtccacaaaaaaacaaattattgtttttaataagttgctatgtagtgttgagaccagagtgcttactctggtgtgcagtcatgcacagtagcattataccaactgaaaaaaacgaatagaacttgcggaaagcacgcatggttaaattaatcttgatattaaagttcaagtggaaaaaagattaaaaacaaaggtgtcacctttcctttttaattgctttttctgcattttttaatatatgtatcatttgccagctttgaccttcattgatgaatccgtttttccttctccctgaaaatttgaaactaaaatattttcgcacataaattgcatactctgctagattctaggtcatatccatcttttctttttaagtttccaggcagtttttttattacttcgttatccaccaccgtgtctgcactgatgcctcgatatatatcatagtatataaaacatttacatgtctacccgtttgtgcagttgatgagatgtacctagcctgtcttattaacaaagggcgtgaggcgtacatcactggtacaacgaacccaactgctcttcctgcagagactgtattgaagatggctactattaatggtgcaaaagcagttctgtgggacgatgaaataggttcgctggaggttgggaagaaggtgattccattagctgttattctgtcatgtgttgcattcgatagccttatgagtattaacactgcccacattttgtttccatattcatctcaaaatccatattaaataaattgcgatatgttgtttttgtatttctctgtcctacataagcatcgtatcatcatgcgagcctatgatttcctatggaattcaaatggtcttgacgtttgagttctagtatattaattcctaagttgacattacagtattcagtattctaatttgtgcaggcggacatggttgttgtgaatccacttatatggtccatggtcccagtgcatgactggtaagcactgctaccttgcagagttgatttaagtctttgaattgcggtactattgaaaataggctttacaaacgggtttcatttcacttctctcaagatttttagaacagcttttgtttgaatccatcaaccaaccaattaacagctttctatggccatgattactggatctgattgttcattgatgtatctagcttgtcgagtagtgacttgggacacacttttggtcatgccataatacttgactcaccttcttcccgttatgcagcattgccaacatagtttactgcatgagaacagaaaatattgaatctgtaatgtgcaacggtcgatggattatgagggaaaagaagatcgtgaatttgaatgaggtaatttactgctcaagtatttgcaccttacacatcgagatgagccaaatatgctagattaaacagtaaacacgatgaacataattgcatgccaacaattcacgaactggttaaactagaacaggtaatgtcaaaacattcatgaggaataaacacttctgaagttcagatttctaatggttagaaagtagaaacggtactccaacagtcctacccctagctgaccatatgctaaaaataggctttggtatataattgtctggttcaccaaccaataattttacaccctgcttaagtacctataatgcactgaaaactgattgtgtctctcacactctggcctctgtggctctgttttttacttttcctgtggtctattccaggaggaggtaattgcttcagctgaaaaaatagcaagggaccttctagcgcgagctggcatcaacctacccaatcggatgaactacttgtgaatttgtgatgatcgtcttgcattttgttcatgtgccactgcttgaatctgtccagtattctgcacggattgtatgataatctcctggccaggggtggtggtacctcaacatgtaaagtaaataagaaatttgctgcagcagtgttataattgcaaatccccccagcggtacagccagactgacaaaagtataattggtttcctctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0468600, RefSeq:Os12g0468600