BGIOSGA013028

From RiceWiki
Revision as of 09:56, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA013028| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA013028, complete gene.| tag = OSJNBA0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA013028

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA013028, complete gene.

LocusTag

OSJNBA0010D22.27

Ensembl Transcript ID

BGIOSGA013028-TA

Ensembl Protein ID

BGIOSGA013028-PA

Length

6131

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:24571199..24577329

Sequence Coding Region

24571199..24571315,24571423..24571515,24571631..24571699,24572097..24572186,24572272..24572355
,24572632..24572796,24573539..24573726,24573907..24573979,24574312..24574365
,24574565..24574822,24575437..24575643,24575839..24575942,24576355..24576499
,24576654..24576788,24577156..24577329

Genome Context

<gbrowseImage1> name=IndicaChromosome03:24571199..24577329 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:24571199..24577329 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGGGCGGAGTGGCGGCGGCGGCGGCGGGAGCTCCGGGAAGAGCGGGACGGGGAGGATGGTGTCGCTGCAGGAGTTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGTTTGGAACACACGATGTGGTTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCTGCTGCTCTTGGGCAAGGTGTAGTTTATCGCTTGAAGGATTCTTCCATTACTGTTGCCTTTGATGACATTCCTGAAGATGGATTAAATAGCCCTCTCCGCCTTGAAAAGCTTGCAAATGAGGTGACATACCGCAGGATGAAGGATGCACTAGTTCAACTTAGTAAGGGCATTCAAACAGGCCCTTCAGCAAACCTTATTCCTGTTTTGTTTGGAGAAAACCCACCTATGAGTTCCAAGGATGTTGCGAAGTTCAGTCCATTTAACAAGAATTTGGATGAGTCACAGAAAGATGCTATCTCGAAGGCCCTCAGGTCAAGGGATGTTTTCTTGCTTCATGGACCTCCTGGCACTGGGAAGACAACAACTATCATTGAGATAATATTGCAGGAGGTGAAACGTGGATCAAAGATTCTTGCTTGTGCTGCTTCTAACATCGCCGTGGATAACATTGTTGAGCGACTCTCCCGATATAGAACCAAATTGGTGAGGTTAGGCCATCCTGCTCGATTACTACCCCAAGTGTTGGACAGTGCTCTTGACGCACAGGTATTGCGAGCAGATAACAGCAGCTTAGCAGGAGATATTCGCAAAGAAATGAAGGTGCTTAATAGCAAATTGCTGAAAGCTAAGGATAAGAATACAAAAAGGGACATCAGGAAAGAGCTCAGAACCCTTGCCAAAGAAGAGAGAAAACGACAACAGCTTGCTGTTGCTGATGTGATAAAAAATGCAGATGTTGTACTGTCGACTTTGACTGGTGCATCTTCCAAAAAGCTAGATGGTATTACATTTGATTTGGTCATTATTGATGAAGCTGCTCAGGCACTTGAGATGGCATGTTGGATAGCCTTATTGAAGGGTCCAAGATGTGTGCTTGCTGGAGACCATCTTCAACTTCCTCCGACTATCCAAAGTGCTGAGGCTGAGAAGAAGGGGATGGGAAAGACACTCTTTGAACGCCTTACTGAAGCTTATGGAGATCAAATTACATCCATGCTCACTATCCAGTACAGAATGCATGAGCTCATAATGAATTGGTCATCTAAAGAACTTTATAATAACAAGATCAAAGCTCATTCTAGTGTTGCTGATCATATGCTCTATGACATTGAAGAAGTGAAAAGATCTTCTTCCACAGAGCCGACTATCATACTAATTGACACTACTGGGTGTGACATGGAAGAAGTAAAAGATGAGGAGGAGAGCACTATGAATGAGGGTGAGGCTGCAGTATCCATTGCTCATGCCAAGCTGCTTGTTGAGAGTGGTGTCCGTGCATCTGATATTGGAATAATTACACCTTATGCTGCACAGGTAACCTGTCTGAAGATGATGAGAAACAAAGATACTAAACTGAAGGACTTGGAGATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCAAAGAAAGAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCCAGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGA</cdnaseq>

Protein Sequence

<aaseq>MAGRSGGGGGGSSGKSGTGRMVSLQEFVSSMAPLIDLEKAAEISAESATSSKTLERRGCVMANLKCTDAQTGLMGKTLLEFQPNKGDVLPPHKFGTHDVVALKPNKADAGSAALGQGVVYRLKDSSITVAFDDIPEDGLNSPLRLEKLANEVTYRRMKDALVQLSKGIQTGPSANLIPVLFGENPPMSSKDVAKFSPFNKNLDESQKDAISKALRSRDVFLLHGPPGTGKTTTIIEIILQEVKRGSKILACAASNIAVDNIVERLSRYRTKLVRLGHPARLLPQVLDSALDAQVLRADNSSLAGDIRKEMKVLNSKLLKAKDKNTKRDIRKELRTLAKEERKRQQLAVADVIKNADVVLSTLTGASSKKLDGITFDLVIIDEAAQALEMACWIALLKGPRCVLAGDHLQLPPTIQSAEAEKKGMGKTLFERLTEAYGDQITSMLTIQYRMHELIMNWSSKELYNNKIKAHSSVADHMLYDIEEVKRSSSTEPTIILIDTTGCDMEEVKDEEESTMNEGEAAVSIAHAKLLVESGVRASDIGIITPYAAQVTCLKMMRNKDTKLKDLEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDHRRMNVAVTRARRQCCLVCDVETVSNDKFLKRLVEYFEENGEYLSASEYQS</aaseq>

Gene Sequence

<dnaseqindica>1..117#225..317#433..501#899..988#1074..1157#1434..1598#2341..2528#2709..2781#3114..3167#3367..3624#4239..4445#4641..4744#5157..5301#5456..5590#5958..6131#ATGGCGGGGCGGAGTGGCGGCGGCGGCGGCGGGAGCTCCGGGAAGAGCGGGACGGGGAGGATGGTGTCGCTGCAGGAGTTCGTCTCGTCCATGGCGCCTCTCATAGACCTGGAGAAGGTTCCGTACTCCGATCCCCTATCGCTTTTCTTTCGCTGTTTGGTTCGGAAGGTGGAACGGATGGTAGTGGTGGTGGGTGGTGACGCGTCTGTGGTGTGGTTGCGCAGGCGGCGGAGATATCGGCGGAGTCGGCGACGAGCTCGAAGACCCTCGAGAGGAGGGGTTGCGTCATGGCCAACCTCAAGTGCACCGACGCCCAGGTTGATTTGCTTCCATTTTGCTGCTTGCTTGCTTGCCCATCGGTGCCAATGTGTCATCGAGGCGTGGTGCTAATCTTGTTCTGGCCTTGTTGGACCTGCTTGGTGCGTAGAGTAGACGGGGCTGATGGGGAAGACGCTCCTGGAGTTCCAACCCAACAAGGGCGACGTGCTTCCACCTCACAAGGTGAGGTTACCTTTGCCCTCCTGTCGTATTGTTGTTATTGCTCGCTGTGATAAAATTCTGGTTAGGAATTTATTTGTGGTATGTGAGAACGGTTTGTTTCAGAACAATTGTCGCTTCAGGTATTGCCGTCGAAACTCACACTTGCAGTATTTCTGCCATTTGTTTAGTAATTGTGAACAAGTAATGTTGTTGTTAACTGATAGTTTCAGTGAAATATTAGATTCGTTTGTAAAGTTCATTATGAATTGCATCACGTGTATTATTGATTTTGTTGAGATTGGCAGGAGTTGATACATGAAAAGCTCATGCATGTTTCTTAATTTACCGGACACTGATTCAAAGAAATTTGTATTTTACTTCACCATTGCTAATGCCCACTTATGTTTTTCTTCTCTAGTTTGGAACACACGATGTGGTTGCTCTGAAGCCAAATAAGGCAGATGCTGGATCTGCTGCTCTTGGGCAAGGTGTAGTTTATCGCTTGAAGGTACCTAACTATCATCTAAGGGCTGTTGACTATTTAAAGTCTTTGCTTCTGAATTAGGAGAGATGACTGTAATTTGAACAAACAGGATTCTTCCATTACTGTTGCCTTTGATGACATTCCTGAAGATGGATTAAATAGCCCTCTCCGCCTTGAAAAGCTTGCAAATGAGGTATATTTTCCATGCTGTTTTCATTACTATTTGCAAATGACATTCCATTACTGTTTTCTTCTCTACTATATTTTCCATGCTCTCTCTTACAACTTTCTGATTAGAAATTTTATAGCCTCCAAGTAACCATAATAGTATAATTGTATCATAATTCCTCTTTGCTTTTTTTTTATCTCCATGTATGTATTTCTATATATCTTCATTATTGCCCCTTGTCCTCCAGCATTGCCTTACAATTCATTGGACCCTAAATTTTGCATCTTAATGCTCTTCTAGGTGACATACCGCAGGATGAAGGATGCACTAGTTCAACTTAGTAAGGGCATTCAAACAGGCCCTTCAGCAAACCTTATTCCTGTTTTGTTTGGAGAAAACCCACCTATGAGTTCCAAGGATGTTGCGAAGTTCAGTCCATTTAACAAGAATTTGGATGAGTCACAGGTTACAATTTGATTTATTTTTTTCAACTGCTTTTTTTTGGCTTGTTGCATAATTATGTTTCAGTTAAGTTCTTATCTAAATAAGGAGAAGAGAAGCCATAAGTACTTGGGGCCTGGAGAAATTTATCAGAACAGTATGATCTACAATAGAATTTTCCAGTGCAATCACTTTGTTCTGCTGATACTATTTCAAGTATCAGTAGAATTTGTATTTTTAACTTATTAAGTACCAGAGGAAGATCTGAAATTTATTGAATGGCAGACACTCATGATTTTAAGAAAATAAAAGAACATATGGAACTAGGCAAATAACGCTAACACCAGCACCTGCAGTTTCAGACTGTGGACATTCCATCACTTTTGGCATTACAACTTACAACCAAATGTGTCAACACCGTCATCGATTACATATAATTCTTGCACCTGCTAATACTGGCTTTGGAAGACCTCATCCTGAGTAGTAGCATATATTTGCAATACTTCTGTTAATGGTGTTGCTTTTGCTTCGGTGAACTCCACAGCTAATTATGCTGGCACTGGTGTTTGGCCTCCACATTTTTTATTTTCTTTGCTAGAAATTGATTGTTTAATAAAAATAAAAAAATTACAATTGATGCCTTTTGTCTTTACCATGTATATCTACTTGTTATGTTCTTTTTTGTATCGCCTTCAAATACCAGTTTCAATATGTATTCAAATGAAATAAATTTCCTTTTTGTGGGGCCCATATCTTTGTTCTGCAGAAAGATGCTATCTCGAAGGCCCTCAGGTCAAGGGATGTTTTCTTGCTTCATGGACCTCCTGGCACTGGGAAGACAACAACTATCATTGAGATAATATTGCAGGAGGTGAAACGTGGATCAAAGATTCTTGCTTGTGCTGCTTCTAACATCGCCGTGGATAACATTGTTGAGCGACTCTCCCGATATAGGTTGCTAACAAAATTTTGAAATACCTTTTTAACTCGAACTTTCTATTCCCCCATCTATCTTGGTAATGTTGACCATTTACCTCATTCAACCAATAATAACTGAGAAAATTCTCCCTATCCTGTCAAAATAAAAGATGTGATATTGGTTAATGTGACATGTTGTTATTGACATTTTTCTAGAACCAAATTGGTGAGGTTAGGCCATCCTGCTCGATTACTACCCCAAGTGTTGGACAGTGCTCTTGACGCACAGGTATAGCTTACTCTGAGTGCTTCACCTTTTCTCCTCTACTGAGGATTATTAGGATAAATATTCATGAAGGTTATGTTCCATAATTATTTCATCAGAGTTGCTTTGTCTCTTTCAATTTTCAACTGTTATATTTATTCAAATACCTTGTTAAAGTGTACCCGCCTACGCCTTATGTGACATCTGTAACATCTGCATGACATTCTCTTTATGCCCAAGTTAAAATGGGATAGATTTTCTTATGAATTACAGTTCCACCTGTATTATCTATGATCCATTCATGCATTCACATAACTTAACTGTACTTAATCTGCTTACTATTTCTAATGAACCAGGTATTGCGAGCAGATAACAGCAGCTTAGCAGGAGATATTCGCAAAGAAATGAAGGTAATCATTTACTACATAATTCTTAGGTTCCTATTATTAAATGGCAAGACCCTGCTTTACATGGCATATTATTTTGGCATTTCAGGAACCATCTAATTAGAAGCTGTCATGTTTAGATGATAGTAATGAAACTGCAATTTCAATAATGTTTTCCATTGTAGTTAAATGTTTCTTGATTTGTTCTCTTTTCATCTTTTAGGTGCTTAATAGCAAATTGCTGAAAGCTAAGGATAAGAATACAAAAAGGGACATCAGGAAAGAGCTCAGAACCCTTGCCAAAGAAGAGAGAAAACGACAACAGCTTGCTGTTGCTGATGTGATAAAAAATGCAGATGTTGTACTGTCGACTTTGACTGGTGCATCTTCCAAAAAGCTAGATGGTATTACATTTGATTTGGTCATTATTGATGAAGCTGCTCAGGCACTTGAGATGGCATGTTGGATAGCCTTATTGAAGGTTAATACTAACTTATGACTAGTTTTTTTTTTCATGTTGCTGCACGTTTTGAGAATGATGATTGCTGTAAACAGTCATCAAAGGTTCTCGTATTATTTATGCTTTTTTGAGTAGCACAATAAAGATAGCATGTACTGTTTCACAAACTCCCACCTTTAACTTTAAGCTTAAAATATGTCTTAACCAAGCCAGCAGTTGAGCATGATCACACGGGTTCAATTTTAAAAGTGCATGGTATAATGAGAACGAGATGCTGCATTAGGTGTCCATTTTAGAGCAAAAGGAAGGAGTATGAGAGAAGTTGGGAAAACTAAATGATTTCCTTGGAAGATAGCTAACCTTAATTTCAATAGGTGGTTACACGTACTTGAATTCATTCTATCAATCTTGTATGGATGTATGTAAACTCTAACAAGTTCTCATGACCCCTGTGGGGCTCCTTCACACTCCACAAGTTGGCTTCTCTGATTATGCCAGTGAACAATTTCATCACCTATTTGATTGCTTGTGTTTGTCATGATTCAGCATGCACAGCGCGTCGGTTAAATGGTCATCATACTGTACTTATTGAGATCTGTCATAGGGCTCCTCAGTTCTTTTGTTTTTGTATGCAGGGTCCAAGATGTGTGCTTGCTGGAGACCATCTTCAACTTCCTCCGACTATCCAAAGTGCTGAGGCTGAGAAGAAGGGGATGGGAAAGACACTCTTTGAACGCCTTACTGAAGCTTATGGAGATCAAATTACATCCATGCTCACTATCCAGTACAGAATGCATGAGCTCATAATGAATTGGTCATCTAAAGAACTTTATAATAACAAGGTGCACTTCCCATTGGTGTTTTTACACTAGCCACCTATTACTAACTTGTTTTCACTAGCCACCTATTAGTAACTTGTTTTCAGCCTCTCTCTTTAGTCCATAACTTTCCTCATGTTGTTATTTCTTTGTTTCTTGTACTTAGATCAAAGCTCATAACTTTTCTCATGTTGTTATTTCTTTGTTTCTTGTACTTAGATCAAAGCTCATTCTAGTGTTGCTGATCATATGCTCTATGACATTGAAGAAGTGAAAAGATCTTCTTCCACAGAGCCGACTATCATACTAATTGACACTACTGGGTTAGTATTCTCCAATGCTTGGCCTATTCAATGTGTTCATTCTTTTAGTCATTTATGGGTTGAACTTGAACCTTGGCAATTTTGCTTCCCTCGTTGCTTTCTTTCCCTCACTCAATAGTGTTGGCTTCCTCTATAAAAGAGTGTCGGCTTCCTCTATATTTCCCTCACTCAATAGTGTTGGCTTCCTCTATAAAAGAGTGTTGGCTTCCTCTATAAAAGATAGGACTACCGAATTCACTTCAAAGGGTTATCTCATACTTGAAGACAATAATTGGGCAGAAGTAATACTTCAAATTTGTAGCCATCATTTGACTGATGAATAAAAGATATCTGTTTTTTTAAAAGAAATGATGTGATGACCAACATCAATGTTTGTTAGATACACTTCTAACAGTCTCAAGTAATCATTTAGGTGTGACATGGAAGAAGTAAAAGATGAGGAGGAGAGCACTATGAATGAGGGTGAGGCTGCAGTATCCATTGCTCATGCCAAGCTGCTTGTTGAGAGTGGTGTCCGTGCATCTGATATTGGAATAATTACACCTTATGCTGCACAGGTTTGCTCCTATATGCTCTGAATATTATCAAATCAATATACAGTGATGAGCTTAATAAAACAAAACAAAATAAACGTTTATAGGACTTATGGGTTGGCTCCTTCATGATGTTGAAGTTTATAGGACTGACTCATTGAATGGTGTAATCCCGTAGGTAACCTGTCTGAAGATGATGAGAAACAAAGATACTAAACTGAAGGACTTGGAGATATCGACAGTTGATGGGTTCCAGGGTAGGGAGAAAGAAGCCATCATCATTTCAATGGTCAGATCCAACTCAAAGAAAGAGGTAAGCTCCCTTCCATGATCCTCCTTGGTGAGTGGATATCCTATGTAAAATATTCAGCTTTACAAACATGAATATTATACATGGATGAGGATTTGATTGCTGCTGCACAGTTGATCCATCAAATTAGCATCTGGGGAGACTTCAACTTATTTTAGAAAAATGTTTAATAGAATAGAGCGAATCAGTATCGATATGATGTGAACGATCTGTAGATATATGTGCATGCCATGCAAAATATCTCATTATTGACATAAGGACGAAATATCATTTTTAAAATAAAAGGACTGTCTGATTGAACTACTGAAATAAGAATTCACAATTATATTACCTGGATACTAAGGAAACCTTATCTATTTGCAAATTTCAGGTCGGATTCTTAAGTGATCATAGACGAATGAATGTTGCTGTAACACGAGCCAGAAGGCAGTGCTGCCTAGTGTGCGATGTAGAGACCGTAAGCAACGACAAATTCTTGAAACGCTTGGTTGAGTACTTTGAGGAGAACGGGGAGTACTTGAGTGCATCAGAATACCAGAGCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA013028