BGIOSGA013166

From RiceWiki
Revision as of 09:57, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA013166| Description = Zn ion binding protein| Definition = Oryza sativa Indica Group BGIOSGA013166, complete gene.| tag = OS03G0626600| ti...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA013166

Description

Zn ion binding protein

Definition

Oryza sativa Indica Group BGIOSGA013166, complete gene.

LocusTag

OS03G0626600

Ensembl Transcript ID

BGIOSGA013166-TA

Ensembl Protein ID

BGIOSGA013166-PA

Length

6094

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:27730505..27736598

Sequence Coding Region

27730505..27730560,27731648..27731714,27732566..27732650,27732852..27733023,27734522..27734642
,27734721..27734804,27734897..27735016,27735327..27735539,27735620..27735679
,27735772..27735890,27736075..27736133,27736264..27736598

Genome Context

<gbrowseImage1> name=IndicaChromosome03:27730505..27736598 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:27730505..27736598 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGACTTTTGTTTCTGTTAAAAAGTACAGGAGTTCAGGCTTGAAAGTGGTGGCCAGATCGTTTCCTCTACAAACCTATAGTGTAAGAATCCAGAAGGGAACTAGTGGCTCTAGGCTTGGAAAGGAGCATGACAGTGACCATGAAGACATAGATCGTGCTATTGCATTATCTTTATCAGAAGAAGATCAGCGGAAGGGGAAGGCTGTTGATGAGGTAGATATTGATCATCGTTTACATGAAGATGAACAACTTGCACGAGCTCTACAAGAGAGTCTGAATGATGAACCTCCTCGTCAGAATGTTCCAGTAAAAGATGTTCACTCGGAGAGTACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAGGGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTGCATGGATTCTGTTTGGCACCCCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAGTTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAGGAGCTTTTCCATCCAAAATGTGATGTCTGCAAGAACTTTATTCCAACAAACAAAGATGGCCACATTGAATATCGGGCCCATCCTTTCTGGATGCAGAAGTATTGTCCTGCCCATGAAACTGATCGTACTCCTAGGTGCTGCAGTTGTGAACGAATGGAGCCAAAGGATAGTAAGTACATAACATTAGATGATGGCCGGAAACTCTGTTTGGAATGCCTGAATACTTCAATAATGGACACAGACGAATGCCAACCACTATATATTGATATTCAAGAATTCTATGAGGGTTTGAACATGAAAGTGGAACAACAAATTCCCTTGCTGTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAGGCCGAGAAAACTGGACATCACCTTGCTGAAACCAGAGGTCTCTGCCTATCTGAAGAGCAAATTGTCCGAACTATACTAAGAAGACCAGTAATTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTATCCTATATGGCCTTCCAAGACTGTTAACTGGCTCCATTCTGGCTCATGAGATGATGCATGCTTACCTCCGACTTAAGGGATACCAAACTCTTGATCCAAAGGTCGAAGAAGGCATCTGTCAGGTTCTAGCTCATATGTGGCTCGAGTCAGAAATAACATCAGGATCTAGTAGCATCATTGCATCCATCGCAGCATCATCATCGTCATCGTCGTCATCTTCAGCACCCTCATCCAAAAAGGGTGTACAGACGGACTTCGAGAAGAAACTTGGAGAGTTCTTCAAGCACCAGATTGAAACAGACCCTTCTGATGTATATGGAGATGGTTTTCGAGATGGCATTAAGGCCGTTGAACGCTATGGCTTGAGAAAAACTCTTGATCATATGAAGCTTACAGGGGTTTTCCCGTGTTGA</cdnaseq>

Protein Sequence

<aaseq>MTFVSVKKYRSSGLKVVARSFPLQTYSVRIQKGTSGSRLGKEHDSDHEDIDRAIALSLSEEDQRKGKAVDEVDIDHRLHEDEQLARALQESLNDEPPRQNVPVKDVHSESTPATFMPPYIFPSTGLRVCAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEFAVHEGNPYHRSCYKELFHPKCDVCKNFIPTNKDGHIEYRAHPFWMQKYCPAHETDRTPRCCSCERMEPKDSKYITLDDGRKLCLECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLLVERQALNEAMEAEKTGHHLAETRGLCLSEEQIVRTILRRPVIGPGNKIVDMITGPYKLVRRCEVTAILILYGLPRLLTGSILAHEMMHAYLRLKGYQTLDPKVEEGICQVLAHMWLESEITSGSSSIIASIAASSSSSSSSSAPSSKKGVQTDFEKKLGEFFKHQIETDPSDVYGDGFRDGIKAVERYGLRKTLDHMKLTGVFPC</aaseq>

Gene Sequence

<dnaseqindica>1..56#1144..1210#2062..2146#2348..2519#4018..4138#4217..4300#4393..4512#4823..5035#5116..5175#5268..5386#5571..5629#5760..6094#ATGACTTTTGTTTCTGTTAAAAAGTACAGGAGTTCAGGCTTGAAAGTGGTGGCCAGGTGGGGTTGCCCTGATGCCTTCAATGATCTGATTGTTTCTATGCGGTCCCTGTGGTTCTGAACTCGAGGTATTTTTTTTTCCTCCAGTGATATTTGCTTTTCCTTTTTTTTTCCTTCGATACTGCTTGCATCTGTGTTGTTAAAAGTTCCATTTTTCATACTCTTTATTGTCCGTTTTGTCTTCGTTAGTATCTGCTCATTGGCATCATCTGTGTTCAATGATTGTTTGACTCATGACTCTTTTATGTGCTTTACCATGATTTCAAGATCCTCTCTAGCTTTTCGAGGCCTCCTCATGGAACAAATGTTTACATTGATCATTCAATTTATCTATTGTCTTTGCTAATTTGTTACTACTAACAAGAGCAATATTGACGCATCATACTGTAATGGCATCACAAAAATGTAAAATTGCTACCAGCGGGTACCACATAGCCTGAGCAACTGTTTTTTTGCAGGACCCGGGTCTGGATTTGTGGAATTGCTGTTGTAGAGGTTGTGTGTATTGCTTGTGTTGGTCCTTTTCCTTTATTGGCTCGGAGGAATACCAATCATAGGGAGATATGCCAAAGAGACTGGACATGTAATGTGATTGGTTGCTGGTCATTTTAGTTCATATAAGAGCATTCCACATTACATTTTCATTTCCATCTGTATTTTTCTGACTTCTCACATACCTGGCCTTTTCCAAGGCAAGAAAGCAATTTTATTTTTAACTGGATCCTGTCATGGATAATTTATTCCTTACCGCCAATGTCCACCAATTTATAGAGGTTTATATCTTACACTATGTGCTTGCATGCCAACAATTTTACCTTTTTACCAGTTTGGAGGCACACCAAGCCAATATCTAATCAGATAAATGAATATTTGATATCCTGTTCTGTATGTAGTTGATATTCTGTTTCAAAACAAAAGAGCACATGCTTGAAGCACCCAGTAAATTATACATGTGATGGGCAGATGGGGCAGACACTGTAGGGATTTTTATCTACATATTGTCTCTTACCAAATACATGCTATTGTAGTCTTCTTATTTATGAGTACTATATACATGTTATTGCACAATTTCAATATGTATTTACAGATCGTTTCCTCTACAAACCTATAGTGTAAGAATCCAGAAGGGAACTAGTGGCTCTAGGCTTGGAAAGGTATAGTAATGCGGTTATTAAATAAGATTAGATGCTGGAATCACATATATTTGATTATGTTGGTGGTACACTATTAGTTTTGTAGAACATCGGTTTCTACTACTGAAATATGTGTAATTGAATGTGGGGAAAATGTGTAGTGGAAGCCGTCCATTTTTGGATCCAACGGTAGTTTCCAGGTTTCCACTACATATGTGGTTTGCACTACATATTTTCCCTAGAATCTAGGCCTATAACCTTATATTGTCCTTCTGACTTCCTCTCACAATTGGCTTTGAATGCAAATAAAACCTCATATGTATGCGTTTCTTTTAGTTTGATTCTTAATAAATTTGTTATGCAGTGCAGGTACAAGGATTTTCGTCTGCCAATACTTGAAAACATGGGTTGGCTGAGCAAAATTTTTAAAGGTTCAGTAAATAGAGTATCAAGAGGGCACTACAATGGAAACACCCATGAAGGCCACTCAGCATGGCACACTAAAGCCTATGTACTGCCCAATTCTGCCTGTCTTTTCATCTTCCCACACTAGCCATCTTAAGTCATACATACTGTGTGAGACACAGAAGAAAATTTCGCTCCTGCCAATTGCATATAAAAAATTTTCTCACTGAGTATTGCCATTTTCTTGGACACTTCAGTTCTGAATTTCTCACCTTTCTTTTGTTCAGTCATGTGTATTTAAGATGACAGTTAGAAGCTTCATATTGTAAGCTATAGATAGTAAATGAATAAAATTCTGTGCTTGATTATTCAGGACCAAAAAAGCTTCTTCCTGATAAAAAAAAATGGATGGACTGGATGTTACTTTATGTACTTCACTATAGCTAACTTGGTTCTAATCACTATAGGAGCATGACAGTGACCATGAAGACATAGATCGTGCTATTGCATTATCTTTATCAGAAGAAGATCAGCGGAAGGGGAAGGCTGTTGGTCTGTATCATTGTCCCATCTTAACCTGTTTTGGTCATCTTTAGTTTAGAGATTATTGGATTTGGTTTTCCTGCAACATGATATTCACTTTAGGACTAGCATTTCTAGGTTGACTTGAATAAATGAGGACCTCCATATATGTTCTGTACTACTGTTGAGCAAAAGCATTCAATATTAATGCATTTTCTTTTGTTTTTACAGATGAGGTAGATATTGATCATCGTTTACATGAAGATGAACAACTTGCACGAGCTCTACAAGAGAGTCTGAATGATGAACCTCCTCGTCAGAATGTTCCAGTAAAAGATGTTCACTCGGAGAGTACTCCAGCAACTTTCATGCCCCCATATATATTCCCTTCAACTGGATTAAGGTATTTGTTATAATAGCACATTATCATGCTGGCCTCTCCTTCCAATTTAATAAACCTTTATATGCCAATTCAGAAGAAGGCCTCTTTTTTTTTTTTTAACAGACACTAGTCAGTTAAATGTGCATTGCATGCCACGTTAATGAGATTATGAGAGGTAGTAAAAGAAAGTTTGGTACAGAACATGTGGTATTTTTTTTAATGTGGAGCTAACTGTACAGTCAGTCAGTGTCATATGTGTTAAACTTCGATCTGTTGCTATATTCTGGTAATCGCTCAAGAAAAAAAAGAACAAGATGGCAAAATTATTTGCGGGTTGAATGTTCGATCCAGTATATTAACTTGGGAGAGGAAGTATACAGTAAGATTGACGGTTTCACTGCATGAGATGAGGTCTGTAGGTAGCAAGTCTGTGGGCTGTGAACAAATCCTACATTATATTAAAACAGCAGCAAGTGCTTTTCTAGATATTGGCTGCCAGGATTGATTAAACAAGGCCCGAACTCTCGTAGCAGCAGAAGATTGCTATGTCTGCTTCTCTATTTAGCTGTACCACTACTCCAAATGTAGCATTCCTTATCTTTTGTTCTTTTCCAGTACCACATTACTTCCCTTGAGTAATTTGTCCCTGGCACCTGAGCCCACTCTCTACCAAGATGCACAATAAAATAAAATATCAATATGTAGGGCCTGTTTGGTACAGCTCCAACTCCTAAATTTAACTCCAGGAGTTGAGTCTGGAGTGGAGTTGTGGAGCTGCCTAAACCCAGCTCCACAACTCTAGTACATTTTGTGAGAGAGCTCCACCCAACTCCATTCCCAGTTTTAGTGGAGCTGAAACTGTTTGGCTGAGCTCCAGCTCCACCCCTCCTGGAGCTGGAGCTGGAGTTGTGCCAAACAGGCCCGTAGTCCCTCATACAGAAGAACACTCGAGCAAGCGCATCGGTATATATATTTTCACATCCTTGAAAAAGTGATGTGGCTGAAAGCTTATCAGTGTTTCCGATATGTCTTTTTTTGCATATGTAGAAGATCATTGTGTGAGAGCCAACATTTGGTTGGGGTGATGAGCAGGGTTCACAATTTTGGTACGCAAAAACATTTTCAGTGGGCGCGAGGGGCTGAAATTTGGAAATTTTGAGTTAGCAATCTAGAATTTTGAACAATTTCTTGTTGAATATGATCGATTGTTTTTTCTAAATTCCCAACAAAATTCGAAATTCTCGACCGGAAAAATGTCCTACTGGAAGACCTGCTAGTAGACCTGAAATTCAAAAATTACGTTGTGGAATTGTGAACCCAAATTATTAGCACTGAATATATGTACTATCTTATAATCATCTTGATTGGGTAGGGTATGGGTATGAACAATATAAACGCATTCATAGTTTTAACTGGTATCTTCTTCATGTCTGTTCTACTTGGGTTCTCACCCTGTTCTAGTGCATGCGGTGGAACCCTTAGGGTTCTCTGATTCTCATGTACCACATTGACGGTGTAGGGTTTGTGCTGGATGTAAAACTCCAATCGGTCAAGGACGGTTTCTTAGTTGCATGGATTCTGTTTGGCACCCCCAGTGCTTCAGGTGTTTTGCTTGTGATAGGCCAATATCAGAATATGAGGTAAAGAGACCTAGCATATTTCAACATAACATGCTTTAAGTAAATGAGATAACTGACATTATCCATTCATTTGGGAAGTTTGCAGTTCATGAAGGTAACCCATACCATCGATCCTGCTATAAGGAGCTTTTCCATCCAAAATGTGATGTCTGCAAGAACTTTGTAAGAATTCATGTTGGATGAGCATGAGAATTTAGTAATAGCTACTTTTTAACTTTATCTGTTGAGTTGTGCTAATGACATTTGATGATCAGATTCCAACAAACAAAGATGGCCACATTGAATATCGGGCCCATCCTTTCTGGATGCAGAAGTATTGTCCTGCCCATGAAACTGATCGTACTCCTAGGTGCTGCAGTTGTGAACGAATGGAGGTTTGTGCTATCCTATAAAAAAGTTATACATGTAGTGATTCAAATGGAAGTGTCAGGATGTAACTAACACTTCGGCATGTTCCCTCAACAAAAAAAATAGAAGTTTGGCATGTAGCTTCTGTTACCACCCTTACAATTTTTTTTTCGAAATCACCCTTACAATTTAAATGTGTTTGTTTTCAATATGTGCGTATGCACATGCATTTGATGATTTCATAGCAATGTCCATTCGTAGTGAAAACGTATTTTAATTATGAATTGGTGAATCTAATGACTTCCCTTCTTTTCTTTTGTTTAATCTCAATGCTAGCCAAAGGATAGTAAGTACATAACATTAGATGATGGCCGGAAACTCTGTTTGGAATGCCTGAATACTTCAATAATGGACACAGACGAATGCCAACCACTATATATTGATATTCAAGAATTCTATGAGGGTTTGAACATGAAAGTGGAACAACAAATTCCCTTGCTGTTGGTTGAGCGACAAGCTTTAAATGAAGCCATGGAGGCCGAGAAAACTGTAAGTGAAATGATCATTTTATAATATTCTAACAGTAATGTACATTATTTAACTTATTGTTCCTTTGACCTCCTTAATAGGGACATCACCTTGCTGAAACCAGAGGTCTCTGCCTATCTGAAGAGCAAATTGTCCGAACTGTACGTTCTTAAAAATAATGCCTTGCTTTAGTTATCTATTGAATATGTGAACTTGATACCTGGCTTATGGCTAAATAACATAATATATGCAGATACTAAGAAGACCAGTAATTGGACCAGGAAACAAGATTGTAGACATGATTACAGGACCATACAAACTGGTTAGACGCTGTGAAGTGACTGCAATTCTTATCCTATATGGCCTTCCAAGGTATATTGAATTATTTTCATGTTTTATCGATCTAACTAATGAGTACTATTATACTGCATTTACTATTATTTTTCGTTTTTCCCCTTGTTATTGGCGTTGATTATGCAACTGGCCTACCAACTTAGGAGAAGTTATTTGTCCTGAATGCATAGATTTTCATTTCCATTATTTTGATTACATGCAGACTGTTAACTGGCTCCATTCTGGCTCATGAGATGATGCATGCTTACCTCCGACTTAAGGGTACTACAGTTACCCTTTTTTACCTTTTGCAGCTATATCTATTCATACCTCTGTGGATTAACGTAGGCTTTCATGTTAAATTTAGTTCTATTGAATGTTACATTTACATCTTAATAACAATTTTTGTCAGGATACCAAACTCTTGATCCAAAGGTCGAAGAAGGCATCTGTCAGGTTCTAGCTCATATGTGGCTCGAGTCAGAAATAACATCAGGATCTAGTAGCATCATTGCATCCATCGCAGCATCATCATCGTCATCGTCGTCATCTTCAGCACCCTCATCCAAAAAGGGTGTACAGACGGACTTCGAGAAGAAACTTGGAGAGTTCTTCAAGCACCAGATTGAAACAGACCCTTCTGATGTATATGGAGATGGTTTTCGAGATGGCATTAAGGCCGTTGAACGCTATGGCTTGAGAAAAACTCTTGATCATATGAAGCTTACAGGGGTTTTCCCGTGTTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA013166

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA013166&oldid=57989"