Os12g0485400

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Revision as of 10:30, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0485400| Description = Similar to Cyclin T1 (Fragment)| Version = NM_001073313.2 GI:297613182 GeneID:4352229| Length = 8505 bp| Definition...")
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Gene Name

Os12g0485400

Description

Similar to Cyclin T1 (Fragment)

Version

NM_001073313.2 GI:297613182 GeneID:4352229

Length

8505 bp

Definition

Oryza sativa Japonica Group Os12g0485400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:18100511..18109015

Sequence Coding Region

18101959..18102194,18102726..18102807,18104449..18104583,18105244..18105419,18105503..18105654
,18107579..18108429

Expression

GEO Profiles:Os12g0485400

Genome Context

<gbrowseImage1> name=NC_008405:18100511..18109015 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:18100511..18109015 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccatacagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcagtagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaagagtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggcttaaagtgccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtcccatgcaaaaaatgatagacgaacaattgccacagtttgcatgttcttggctggaaaagttgaagagacgcctaggcctttgaaagatgttattctggtttcttatgagattattcataaaaaggatcctgctgctggtcagagaatcaagcagaaggaagtatatgatcaacaaaaagaacttattttacttgcggagcgagttgtacttgcaactcttgggtttgatttgaatgtgcatcatccatacaagcctttggttgaagcaataagaaaatttaaagttgctcaaaatgcgcttgctcaggttgcatggaattttgtcaatgatgggctgcgtacttcgctttgcctgcagttcaagcctcatcatattgcagcaggtgctatctttttggctgctaaatttctcaaagtgaagcttccatctgatggtgagaaggtttggtggcaggagtttgatgtgactccaagacagctggaagaagttagcaatcaaatgttggagctgtatgagcaaaactgtgcagcacaggcacaaccgtcccatggaaatgaagctgaagggagctctgctagtgttcctaatcagcgagtctctgtaaaatccgaggaaacacctcttcctcaccagtcgaaacagtcaagttcacagcattcaacaggtgctccaagtcatcatggtgtcgagcactcaaatctagaaaagcaaactgtggaccagaaaatgcttcaaaatgacaatggtgaccatgggagcaacaaaacaagaagcaatcagagtggaagtagagttgattttggtgccaacgatggtttacatcatgacaaacagtccatgacagaaaataagaatcttccatcacatggcaactccagtgaaatcagagatgtcaaccgcaatggcaatgatggtacgaatgtgacatccttgatggtaaataaaattgacaaggataaggtgaaagcacaaatggaaaagcaaaggaaactgaaaggtgatgttgctaggaaggtagaggtaatagatgatgatgatgatcttgagaggcaactagaacatgacattgaattggctgttgaggataataagataaagcaggagaggaagcagagttcccctcatgttatgcatcggggggatcatagaaatgctgatcaagttacaggcaatgggcaccttggcaagcagaatacaccagagactgctcaagatgccccaatggacgacattaaagaacagcgcaattcccatggctcaaagcaccatgacagtcatgatactgctcatgagcgaggtgaaagagactataaaaggcctcggcctgaaggttag</cdnaseq>

Protein Sequence

<aaseq>MAMMPSDSSHHGIVENSPYRTTQGRNEETGELGASWYFSRKEIE ENSPSRRDGIDLKKESYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAK NDRRTIATVCMFLAGKVEETPRPLKDVILVSYEIIHKKDPAAGQRIKQKEVYDQQKEL ILLAERVVLATLGFDLNVHHPYKPLVEAIRKFKVAQNALAQVAWNFVNDGLRTSLCLQ FKPHHIAAGAIFLAAKFLKVKLPSDGEKVWWQEFDVTPRQLEEVSNQMLELYEQNCAA QAQPSHGNEAEGSSASVPNQRVSVKSEETPLPHQSKQSSSQHSTGAPSHHGVEHSNLE KQTVDQKMLQNDNGDHGSNKTRSNQSGSRVDFGANDGLHHDKQSMTENKNLPSHGNSS EIRDVNRNGNDGTNVTSLMVNKIDKDKVKAQMEKQRKLKGDVARKVEVIDDDDDLERQ LEHDIELAVEDNKIKQERKQSSPHVMHRGDHRNADQVTGNGHLGKQNTPETAQDAPMD DIKEQRNSHGSKHHDSHDTAHERGERDYKRPRPEG</aaseq>

Gene Sequence

<dnaseqindica>1449..1684#2216..2297#3939..4073#4734..4909#4993..5144#7069..7919#atccgcgagaagcacccgaaccgccgccgccgcccctcctcctctcttcccccttccgccctctcagccctcgccgacgacgaggaggagaaggcggcggccgcacgcacgccgcgcgagaggggcaagcaaagctcggtggtggtggtggggggggggggggcggaccgcgtcgcgcccccggcgcctcggcgccatccgccccgccgcggggggcctcaggcggaggaggaggaggaggaggcgaaaccctagcgcggggggagacgaggtacgcgtcgatgcctctctgtttcgattctcgcgtctcgtgatggcgggtctcattcgcgggggggggaggggaatcgaaaccctaggtgcggcgtttttgccatttttcgaaagctgtgcggttcaatgaattccgaaaccctaggtgtcgcgattggtgccatttcggctcgatatatggtcttcgtgcgggggtatgggggattcaaggtgtgatcttgcgggatgtattgggctcaaaatcccctttttaggaaaaaagtagggtcgaatcgcggatctgcgtaaataggaaaaaacgtcaacaaaacgggtggacgacgtcacccacgctatgggggggttccccctacccaggctgcgggtcaaaataaatccatgattttttgccatgcccaaaaagttttttagggggtcatttttttgcaaaatcttgaatcccccctttgtgtatgttgtaagactgtaattaggtttcgtttaaaaaaccctaattggatgggcaattttaggagatgtatgatgcattttgtgggtgatgaagtatcactgaggatagggcttcgttagcctgcaaacataatataaatcaataatcgatataaatctttctgtttaaccaggcgaccacccttgattggtgtatcaggaccaatacgtacatagacattggaattgatctaaagtgatttatgcttttgaatgaggtttgcatcttagggaagtaacgagggttgctgattaaattttacttgtctagttctatgctttagaaactttagacagcataatcccgataatgttataaaccataatctgtattagttccctgcattcatagttcgacaacgtgtactactagacgtattcttggctttttgccattttctctggtagtggggtattaatgggtctagtgacttgtaaagcatgattatcatcctattgctctttctatttcgaacttacagattggaatgagcataaagccatatgttagtactttagaattaatcattacttgtactgtatcttattatcctgtcctttgtccttagtaaatttataaacacttactgtatctttttcgttcagtgctgctcaggccactttcaatagataaagaagtaatatcttcatcagtcctttctcaatatagttgagagcgagtttacatggctatgatgccaagtgattcatcacatcatggaattgtagaaaatagcccatacagaactacccagggcaggaatgaggagactggtgaacttggtgcttcatggtatttcagtagaaaggaaatagaagagaattctccatccaggagggatggcattgatttgaagaaagagtcttacctccgaaaatcatattgtacttttctacaagatttgggcatgaggcttaaagtgtaagatcatagttgatttaacttatatttttcattgttgatgttaacttgttcctttcaatcattattatgatcttcaattaccatgatgcatgcatttctactttattattttcaaaggatgctaaacttaactgaagtatatctattgtggttgtaatttgtaagccgttagcttatttttggtctgatttgttctaataagcttgatcaatctatttacccctttgtttggacatccatgtgagatccatttatgtgtatataatcaacatagaagcagaagatgtttttttatctctttcaaatttatgaggacctggtaattgtttggtttcgacttgttgaatgtgtatattatcaaaatatggaagcagaatgtgtgctttatatcattgattttagcccttgattgccatgcaaattgttctggtcatgtgaatactacatattgtttagtttttcttatttatggagtataatatcattctgtctacttccaatcaatgactgccttttgttctgtggtaggccacaagtcactattgctacagctattgtgttctgtcaccgtttttaccttcgtcagtcccatgcaaaaaatgatagacgagtaagtactttcaatgcttggttcgttcctccttttgtggttttatggatggctatttctcttttagttagtagcctttatattacaacgacatatttgcattttttatctagttctaaaacatgtttaacaagaaaatggtttccttctgtatggatagtaatgtaggagcgatgaaaactgcaatattttatagatatagaagttgtgtcgcggggaagtacatactttgacatttgcattttacgatcacaagagctatggggacttcattacttaatttatagggactgaagttgttgttattagtgcagttaaagcgaaaagtacactaagacgcaatagtattatattgcctcaggtacaaagcattaaaaagtgtgtgccttagacacatggagcacaatataaaaacataaatgtctacccctaagtaggaagctccatgcctgattctggcagctgaccaaaaacaaactaatagttaagaaatatataacggataaggtccgagactagcaaactgcaattcaagtagtttttggctgctataatatacatagcgtgccacattaataaagttctgctaagaagttaataacctaatccttcaacaaaagatgcccaaaatatgagtcctgaatcaagctggcagaaaaaaagaaggcagcaggcgtctgagcgccttgttcttaagcctaaagttggctcaccaacggcattgtgctttaagctactctaggtgctttagttgcgaccctgcgcttcgcttgcttttgcatctaggcgagcgccttttgtgcttttgactgcactgtttgttatgagataaaagtaccacatatatttgatagttgttggtggaggttacggattaatgatccagattaaagttgaccagtggttgccccattatcaatcttctatgtagttaggagttaggggagcattggtgagtggtgtgaaaaagttgtccctactgtaacattggaaaatttttacatttcccaaggttttgctataaaatgaacgagagaaccaatgtgaatggaaaccaagcaaggatatgataccgctaaggcggtaaagcatttataaagctaccacgggattctcaaacggaacacctcaatcttctgcgctatctgtgtgcagaccagctggcgaatcttgaatgcttttagccatcacatgtataatacaacactttcatatttgatttaagctaatacacatgaaagcattgaaaatcacatgaaaaagtgggagatgcttccggataatgccttaaatgttggaattaactggaacaaatataatgtagaacttgctatgtctatagtattgtagtgtcaaaagctcagagctataaccagaaagagaaatgaatacaaattcttactgccaatggaaagagacagtattgtagtgcatgtgagtttgttttacttgtcctgagattgtttagtattttgtaccatgtatcaaacgaaataattttctattctcattttccttgcattctcgtgtcgcaaacttttgattgcatgatcttaattttactcctatgttaagtgttgtcctatagatctgtacctgtttgaagagagaacttataatttgtactgaccgttcttacagacaattgccacagtttgcatgttcttggctggaaaagttgaagagacgcctaggcctttgaaagatgttattctggtttcttatgagattattcataaaaaggatcctgctgctggtcagagaatcaagcagaaggtaacaataaactagatgcttcttttgctatatactttaattttatgaatttgttttctttcttgcaaaaaaaaatccctctgatctgcatttggcagcaggaccatccgttttgcctgatatttagttttctttgatgttctaagtattttgactgttcaatttcctggtaaacattactggctatattggcaactattacccatcgcctttttgatttttttgcggcatttttgaatcctagaatttatctaatggaagaatcaagaatgtgaggttaaattacatgtaaacaaatttcaacatctgacagttattcattgtattatatcatgttggttgtgattaagttaaccatcaaggcatctgcctgtgataattacttccgtcctggttttactgcgtgcatatgtaaaaaaaaatggaagtaaatagtcaccattgtatgcttctattctcagctaatgcttcttgaaaacaatccaaggctagcatatagggttatagcgtttatgactcctgatagtagtataggctttttccctgcacgtgatatttcctgctttgggagattgtctggacggagttatttttcttcctgcaccaggcaatgatttccactgggatgctttaatgaatggtctgtaattgtctctgcaggaagtatatgatcaacaaaaagaacttattttacttgcggagcgagttgtacttgcaactcttgggtttgatttgaatgtgcatcatccatacaagcctttggttgaagcaataagaaaatttaaagttgctcaaaatgcgcttgctcaggttgcatggaattttgtcaatgatgggtatgctattgatacccttattatctttagagatatcactcaatcatgtatataacacgttaaaaagggcgtatattgtacaggctgcgtacttcgctttgcctgcagttcaagcctcatcatattgcagcaggtgctatctttttggctgctaaatttctcaaagtgaagcttccatctgatggtgagaaggtttggtggcaggagtttgatgtgactccaagacagctggaaggttggtgcctagataatgttgtgttctatacttctatctggtccatatgacggtttacaacaatctcctgagttttaaaccgcatattttttttaacgagcatgttgactaggttgctttggtaccttactgctggctgctgaagcagttaatgttgcgctgcagcttatttaaattttgtatactagttgaagcaatggagaatctgttctgatgcattagtttattactctattcatcaacagatttcattcctggattttgcacaaaaattaatatacatctagaaaagaacacattgttccttaggtttgttatggatttagaatggtctattttattagtccatgcctccatagtagtactaggaaatagaaattaatcatcagaagagcagggaatataagtctaaagtattcagcatcatcttgcaatcatcagatgctatgtttggtcatggtttgtagaaatacttttcacactacgcggcttcctttttgataatcctctgtttcagaaaagtacatatttgtattcaacttgtgcagattttcgattttaaatttcacatcgtcagctgtcctttttctaaaaggtttacaccccgttgttttctacattaactttctgcaacattctggggggatgggttaagactgacataccgtcatacacaaggtttttcaaagaaaggcaaggacaaaaaagttcacaagaatttggccaggtaccaaaaaatattaattttttctgggtaccaagtagtaataccacaacttgggctaaaacttcttacctataccatttcatcatttttgcccttctttcttctcccctcttcatcccctcactgattctgggaatgatgtacctggagcaaagcatgtggcctgctgaggctgatgctgtctgaggtctacactgtggcctgcagcactgaggtgctggtttccatcctgacctctggcacgaccatcttggcattgctctctgtgtgatgccatgctcagatcctcgcctctttactgatctgctatgccctgctttgaacagataattggttgcttgcgaaaggcttgatttacgtagtggattaattcgtagtgggtgttggtggaatagtaattgtgcctttcattagcatgttcttgttttcttattttctgctgtattgattgaaatttgggtcataatgtggagcttatgtagtagtctttctaatgaattactagcatacagattctcagatctttgttattactatttgtatgttctaccttctaaagggagctattaaaaatctctccatgggtatgtgtgatttcataaatagttcacgtggtttcataagcacacgctttcaattgcaatctgtctaatcaaagcatctggttggttaggatctgagggtttatgtgctaattgtgttcgatctgatggctagaatttttggggtcagttggcataagcactgcattaggggtcaattttagagttcacaagggtttatcttcataccttggcctgctgatgtgcaatggttaactgaactggctgaatgcacttatttttcttagtggggacctgccaaactatatattaagtataaacattacaatgaaagctgaccaggatacacagaaattctggaaaagcctaattgtggccagttttcgaaaatttgatagggtccagaaaccggtttcttttggtcgtgtcatcttgcgcaacctgatttgtgcttgctaagttgctatgagcaatccaaatttacattgactaggtgctgtatattttaagtctttttattcttgttgcactagttatacttatttaactttttgataatacaatttgatcatgacacattcctttctgggttcttgttaaatcagataataatgcatgtctcccttgattgcagaagttagcaatcaaatgttggagctgtatgagcaaaactgtgcagcacaggcacaaccgtcccatggaaatgaagctgaagggagctctgctagtgttcctaatcagcgagtctctgtaaaatccgaggaaacacctcttcctcaccagtcgaaacagtcaagttcacagcattcaacaggtgctccaagtcatcatggtgtcgagcactcaaatctagaaaagcaaactgtggaccagaaaatgcttcaaaatgacaatggtgaccatgggagcaacaaaacaagaagcaatcagagtggaagtagagttgattttggtgccaacgatggtttacatcatgacaaacagtccatgacagaaaataagaatcttccatcacatggcaactccagtgaaatcagagatgtcaaccgcaatggcaatgatggtacgaatgtgacatccttgatggtaaataaaattgacaaggataaggtgaaagcacaaatggaaaagcaaaggaaactgaaaggtgatgttgctaggaaggtagaggtaatagatgatgatgatgatcttgagaggcaactagaacatgacattgaattggctgttgaggataataagataaagcaggagaggaagcagagttcccctcatgttatgcatcggggggatcatagaaatgctgatcaagttacaggcaatgggcaccttggcaagcagaatacaccagagactgctcaagatgccccaatggacgacattaaagaacagcgcaattcccatggctcaaagcaccatgacagtcatgatactgctcatgagcgaggtgaaagagactataaaaggcctcggcctgaaggttagttttgatgacattgagagatcatttgtgattttgagcgatgtgctggaaagtgagcacttggcttggaacttaacatattaagatcagcatatgttactcgaacatatgcattttctgcctgagatcgctgccatgtgacatcaaagtgggcatatgctgtggagtgacaggcataaggatgctcatgtttttacccagctgtatacaacctcgcaactgactgcaacgggtgttttgccctcgatttgtactgggggacagtttgggaagaaactcatgatgataaaatctgtgtttcaacaagtattggagtaaatacactggagaaagcctctagttccatttgcgttgagttctttctttctttttttgtttttaggcgaattttcagcgacgttccgtagattagctagggttcaactttgtccactagatgaattgaatatgcttttgcaggctgtctgccccttaactagctcgagaagttggcattggttcataactttgaaatattttagcttgttcaggtggcggtttcttcccaacattgaacctggattctcgaatggaatggcgttcaaatgt</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0485400, RefSeq:Os12g0485400