BGIOSGA013344

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Revision as of 10:00, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA013344| Description = Japonica Group Os03g0684400 (Os03g0684400) mRNA,| Definition = Oryza sativa Indica Group BGIOSGA013344, complete gene....")
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Gene Name

BGIOSGA013344

Description

Japonica Group Os03g0684400 (Os03g0684400) mRNA,

Definition

Oryza sativa Indica Group BGIOSGA013344, complete gene.

LocusTag

NM_001057454.1

Ensembl Transcript ID

BGIOSGA013344-TA

Ensembl Protein ID

BGIOSGA013344-PA

Length

6007

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:31325689..31331695

Sequence Coding Region

31325689..31326126,31326874..31326946,31327148..31327218,31327754..31327839,31327940..31328030
,31328479..31328547,31329279..31329359,31329436..31329601,31329788..31329833
,31329911..31329991,31331261..31331343,31331460..31331503,31331600..31331695

Genome Context

<gbrowseImage1> name=IndicaChromosome03:31325689..31331695 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:31325689..31331695 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGTCCGTTTCGTCGTCCCCGTCGTACTCGTCGCAGGCCGCCGTCCTCCTCCTCCTCCACCAGCCGCCGCACCAGCACGGGCACGGCGGCGCGTGCCTCCGGTACCGCGGCTCGCAGTCGCAGGGGAGAGGGAATGCCGTAGCTACGTCGCTGGGGCTCTCCGCGGCGGGGCGGGGCGGAGCGGGGGGCCTCCTCCTGCTGCCGCCGCTGCCCGCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAGGCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAGCCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATCGCTGAAGAAGAAGAGGAAGAAATCGAAATGTTGTTGGAAAATTATCTTCAAAGATGTGAATCAATACATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTCTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAA</cdnaseq>

Protein Sequence

<aaseq>MASVSSSPSYSSQAAVLLLLHQPPHQHGHGGACLRYRGSQSQGRGNAVATSLGLSAAGRGGAGGLLLLPPLPALRAAEGKDGRAVTKDEEEEAAAAAVEEEGEVEVRREEDKPGDDGSREAAARGSGSGRFSADYISLGIREPVYEVIEVKSNGRMSTKKISRRQLLKSSGLRLRDTRSVDPSLWLMNSMPSLLVREQAILVNLGSLRAIAMHERVLIFNYNSPGGKAFLDSLLPRLNPRNINGGPAMPFQLEVVEAALLSRIQRLERRLMRIEPRVGALLEVLPNRLTADVLEQLRLSKQALVELGSRAGDLKQMLIDLLDDPHEIRRICIMGRNCTLDKLSDNMECSVPLEKQIAEEEEEEIEMLLENYLQRCESIHGQAERLLDSAREMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAIGALIAGIFGMNLKSYLETNAWAFWATTGGIVVGAVAGFFIMYSYLKTRKIL</aaseq>

Gene Sequence

<dnaseqindica>1..438#1186..1258#1460..1530#2066..2151#2252..2342#2791..2859#3591..3671#3748..3913#4100..4145#4223..4303#5573..5655#5772..5815#5912..6007#ATGGCGTCCGTTTCGTCGTCCCCGTCGTACTCGTCGCAGGCCGCCGTCCTCCTCCTCCTCCACCAGCCGCCGCACCAGCACGGGCACGGCGGCGCGTGCCTCCGGTACCGCGGCTCGCAGTCGCAGGGGAGAGGGAATGCCGTAGCTACGTCGCTGGGGCTCTCCGCGGCGGGGCGGGGCGGAGCGGGGGGCCTCCTCCTGCTGCCGCCGCTGCCCGCGCTGCGGGCGGCGGAGGGGAAGGATGGGCGGGCCGTGACCAAGGATGAGGAGGAGGAGGCGGCGGCGGCGGCGGTGGAGGAGGAGGGGGAGGTGGAGGTGAGGAGGGAGGAGGACAAGCCAGGGGACGATGGGTCAAGGGAGGCCGCAGCGAGGGGATCGGGGTCGGGGCGATTCTCCGCCGACTACATCTCGCTCGGCATCAGGGAGCCCGTCTACGAGGTAACCGATCGGCGATCGAACGCCTTGTAATGGTTAATGGTAAATTGGAGACAGCAAGGGACTCATTCTTATGATCATATAAGTCAAATTTTAAATTTTAGAACTTAATTTTGAATTTGATTTTTTTTCATTGTAGATTATTCGCCGCATTTGTTTTTTTAGTCACTAAGGACACGTATATAAAACCTTTACTCACAAATGATTTTTTATTTGCTAATAAGCGATTCGGATAAGGTTGCAAGGTCGTGCATCAGCTAACTTCTGTTCCTAGTCAGAATTATGGATTGCAATAGCTCATGTTCTCAAGGTCTTAAGTCCACTCAACAAGCCAAATGGAAATATTGCAATATGATCATTGTGAGTGTCCAAACGTAAATAAACAATACATTATATCCCGTTAATCCAAATGTGTAACTTTGGATGGAGGGCTACCAGTAGGCTTCATGCATAATAAATCTTTCTCTAGGTTCAGATTTTGCTCTCTCTTTTTTTCAAGTCATGGGGAGTTATGTCCCTCGTTGAGATCATTTTCTTTGCAAACTCAAATGGCCGTGTGCATCCTAGATGCAGAGGCTGGGGATGTAATCATCTCCCTTATCTAAAATAAATCTGCAATTGTCATGCTAATTTGATGCATGTTTCTGTAAGGGTAGGTTTGCTTTGGAATGAAATGCCTGTTACATATTCTGGGACTTCTGCAAATTGCAAGATGCAAATTAACTTTCCCGGATATCAAATTTTACTCAGGTGATAGAAGTAAAATCTAATGGGAGGATGTCTACCAAAAAAATAAGCCGGAGGCAGCTATTGAAATCAAGTGGTAGGTAGAAAGAATATGTTTCTCAAGGACTGTAAAAAACATGATTATGTAGTCTGTACCAAACTCTCATATAGTGCTTGATAATTTACTGGTAACAGTTTTAGAATTTGAAAATGCTGCCATTTCTTGTGGTTTTGTTCATTCTTGTGAATGTCAAGCTCATTGACAGTATTTATGTTGATCACCGACCTTTTCTTATAGGCCTCCGCCTACGAGATACCAGAAGCGTTGACCCATCGCTATGGCTAATGAATTCAATGCCATCCTTGCTGGTAATAAGATACTTTCAATAATTAATCATGTAGACTTTACTCTGTATATGTTTCCCATCTTTTCCTACAATTTTCAGTTACACAAACAATGGAATGAGTGATGCTAATAATTGTGTATGTACAAGAGTCTGAAGATAGTACAATTGCTCTGTTACAAGTATCTCAGGTTGCCTGTCAAAATTACCTATGTTATTATAGTCAATCACAGAGTCAGAGTTCAATTTTTTTTATTCAAAGATAGAAGTAAAGAAAAAGGTTTTAATTCTGCAATATTTTCCAGCTCACATTTCGTTTAGCTGTCTTTTTCAGTAACCTGCATTGTGATTGTAATCTTGACAACCACTGTTCATTACTATGAACTGATAACATACATAGAATATTTGTGTATAGCTTTTCATGTAAACTTCCATATCAATATATTTGAACTCTATGTTTGCATGGTTACTAGATTCTAGATTTATGTAGAAGTTAATTTTTTGCCTTATCAACCTGCTTCACAGTTCAACATATTGCTTCTATGTACCATTTCATATAGGTCCGTGAACAAGCCATATTAGTAAATCTTGGTTCCTTGCGAGCAATTGCTATGCATGAACGCGTTCTTATATTCAATTACAACAGGTCAGTTTGTACACTAGTCATTTTAATATAAATTGTATTTTACTTGGTGAACATCACTATTGTTATGAAACTTATCAATTATTTTATCTGACTTGAGTAGCCCAGGAGGAAAGGCCTTCTTAGATTCATTACTGCCACGGTTAAATCCAAGAAATATCAATGGTGGACCAGCAATGCCATTTCAACTTGAGGTATCAGGCATATGGATATTCTTATATTAATCCATATTTGTGGTCTGGAACAGTCTTAATATGATGATATTTTCCTTGTCAATTGTTTCATTTATATTTGCCTCCATGGAAGGTTTACTTTGTTTTCAACTCACATAGGAATAAGATTGTCATCCATGAGTTTTCCTAGTTTCTCTTAACGGTCGAATGGAATCTTGAACAAGAATAGGATTATCATCTTTGATTTTAAAAGTTCTTTTTGATTGTACAATATCTTTTTTGGTCTCATTAGTTATTATATTAAATCATTTAACATATATTGCTGACAAAAAACATTTTTATCGCCATCATGCATTTGCCAACATGTCATGCTATGCTTGCATTTTCACCCGATTATTGAGAGTACCATCCTCCTGCCAAATACTGGGCCAAGATGATCTGGTTATTTATTGCCTTCTCTTATATTCAGGTTGTCGAAGCTGCCCTGCTTTCTAGAATACAAAGGTTGGAGCGAAGGCTAATGCGTATCGAGCCTCGTGTGAGTGCCAGAAAAGTCCCTGCTAGCTCTACATCTTGTACAAGATTGTATATCCTGATGTTATTAGTTCTACTTTCTGGTGCATATTCAATTTATGGAGCAATCTGATATATTGTCAATAGGTGACTTAAGACACTTACGAATTCCTGTTCCTGTCCTCTATTTTCTTGATTTCAACCTTGAAAACTTCATTCAAAGCACATATATACAGAACTGAACCAATAATAATGCATGTTATTTCCATATCCTGCACCCTAACTCTTTCCTTTGGCATTTAGAAGTCCCTGACTGCAGATTTGCACGCCTTCCTCTATATTTTTATACATCTTTACCAAATGGACTAATTGAAGCACCTGATCTTCACACAAGTCAACTGCACAAATCATAAGCTACTGTCAATACCTAGCTTTTTGCTGAGCACTTACTAAGTTTAACACTAGGGAGTAAGGATCTTCTTGAAGTCCCTTGTAAATCACAGACAAGACATAGACCAGTACCATGTGTCCGTGCCACATGATCACTGCAGAATTCCTTCTTTTTTAAAAAAAATGGGAAACAGTCGGAAAGAGCCCTACCAAGCTGACCCTGCATTTTCATGTGGTATTTTAGGTGTTGTCGTATTCTTGTGTTTGTGTTTCAGTCATGTATGGATCAAGAACATGTCAGTGTTCAAATTGACTCTATTTATAATGGAAAAAATAATAATTTGGGTATCTGGGCTTATATCTCAGGTGGGTGCTTTGCTTGAAGTTCTACCAAATCGGTTGACAGCTGATGTGTTGGAGCAGCTTCGTCTAAGCAAACAAGCATTGGTATTAAAGCTGCGCTTTAGAATCATTTCCTGGACTTGTTTGTCAAGTTTAATTTTGTCTCTATTCATGTGTCAAGGTTGAGCTGGGTTCACGAGCAGGTGATCTCAAACAAATGCTTATTGATCTCCTAGATGATCCTCATGAAATCCGTCGAATATGCATAATGGGAAGAAATTGCACGCTCGACAAATTAAGTGATAACATGGAGTGCTCCGTTCCTTTAGAGAAGCAGATCGCTGAAGGTATGGATTGAGAGCATCATTGGACTTTTTATATTTTGGAGACATATTACTGCCTTCATGGATTTTTTTGTTTCCAAGCATGGCATGTGCGGAATTCACAAGGAGTGTTGCAATCACTTATTTGTCAGTAGTTAACTGTTTGATTCTGTTTTACTTGTTTCATCTGTATTTTTTTTGTTTTAACAGAAGAAGAGGAAGAAATCGAAATGTTGTTGGAAAATTATCTTCAAAGGTATTCATCTGCAATACAATCTTTTCAGATGTCTTGTTTCTTTCTTGCAGACCTTCATTGTGTATTCTTACTGTCAGATGTGAATCAATACATGGTCAAGCAGAGAGACTTCTTGATTCTGCAAGAGAAATGGAAGATTCAATTGCGGTCAACTTAAGGTCTGTCTACTCTCACAGACCACATGATCTCACAAAGTTTAGCTTCATCAATGCATGTGTTCTTATAATTTATAACAATGCTCACTTTTGTGATTTTTTTGCTCTTGAATATAATTGGACAGTAAAAATATATGTGTAAATGTATGAATTTTAATAAAAACTATATTTTGAATTTAATAAACGATCTAAGGTGACAACCGAACATAAATTACTAGTTCAACCAGACAATCAACCATTGTTTTCTACTCTTCTCTCTACATTTATATTCCAAATCATGTGCATGGTCCATAATTTGTTTAACACCCTGAAGTCACTCCAACTTGGACTAAAATGGTCTTTGATTTGCAAGCCCTGCATCTAAACAGACATCGCATTTTATTTGCTGCCTCTAAACTGTTTTTAGCAGCTACTATTTCTTTGTGAACCCTTCATCCAAGCGACTGAGTCCAACTGTACTTATCATAAAGCTAGGCTGTGTGCATCTAGAAGATCATGTAGCATGGTAGCTTTTCAGCAAAAAGAAAGAGAAACACGTTCTCCAATATGGAAATAGAATTTATATCCATCAGATAACTGTAAAATGATCTTTCACATATTTGCAGTACAACCAAACTACAATTAGCATCACTACAAATGGACATTTCAGATTCTTAAATTTTATAGCTATATTGTGGCGACTAGCGAGAAAATACCAATTAAGAGCAAACAATACACTCCAAGTCTCCAACATAGATGAAATTAAGAAAGCAAATGCAAGAATTACTTGGAAATGGAGGACGCACCAATTATGTACTGGATACGTACATAGTACTAGTCTCAAAATTTTGCAAATGTTCTTTTGTGGGTTGGGGCCTTGGGGGCATGACTTCATTATCCTCCATCCTTTACTCTCTGTGGTGTGCGGGTGTCCACAGGCCATGGCGGTGTGTACTTTGCAACATAAAATGCCAGCATTATGTTTCAGGTTTCAATTATCAAAGCATAACCAGATAAAAGAAAGGGGGACTGCTTGAGTGCTTCAAATTGCATTCCCATAATTTTATTTTTTTAGAACTGATTTAAGATGAAATTATGAGAGTGGGTCTTGGTATAAGGTGGTGTGTTCCTGCACCTCTGTTTGTGTAGCATACAATCACAATAAACTATTTGAGAATTGTGGGATCTTGTTCTTTTTGGCGGATGTGAAATTTATGTGAACTAGCTCAACATCACAAACATTTCATAAATTATGGGTTTTCTTAATTCTTACCACATTGGGCATCCTTACAGCTCCCGGAGACTTGAAGTAAGCAGAGTTGAGTTGCTTCTTCAGGTTGGAACATTCTGCGTCGCCATAGGAGCATTAATTGCAGGTACAAAAATCTGTCAGCGCTTTTGTATCTAGTGATTTTCAAATTTCAGTTCCTATCTATCACTCTTTATTCTTGAAGTAATGCTATAATTGAACCGTTGTATTTGTTTCCTGTAGGAATATTTGGCATGAACCTTAAATCGTACCTCGAGACAAACGCGGTATAGCATTGCACTCTTGAGTTCAATTCTGCTTTCTGCCACGTACTGGCACTACTTGATATAGCATGAGTTGATGACGAGTTTATTTTGGAGCAGTGGGCATTTTGGGCGACAACTGGTGGAATAGTAGTTGGAGCAGTGGCTGGATTTTTCATCATGTACTCATACCTAAAGACTAGAAAGATATTGTAA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA013344

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA013344&oldid=58167"