Os12g0489800

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Revision as of 10:30, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0489800| Description = Similar to NBS-LRR protein (Fragment)| Version = NM_001073329.1 GI:115488619 GeneID:4352246| Length = 4044 bp| Defi...")
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Gene Name

Os12g0489800

Description

Similar to NBS-LRR protein (Fragment)

Version

NM_001073329.1 GI:115488619 GeneID:4352246

Length

4044 bp

Definition

Oryza sativa Japonica Group Os12g0489800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:18514436..18518479

Sequence Coding Region

18515328..18516605

Expression

GEO Profiles:Os12g0489800

Genome Context

<gbrowseImage1> name=NC_008405:18514436..18518479 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:18514436..18518479 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcaaatgagattcactaaaatgagctggggagctgctgcccgagggatccagacagccacagggtttgttacaagcgtcaatacatgggctgaattcttcaattgtctgagctcagccatttcatctgcatgctcttggatcaacattcatcagaaaccacagaacgattttgtaaaggaagaaatccagcatctgcaaagcgatttatggcagctacagacaactctgccaaaaatgcgcaaccttgttgagatacttgagtggcaaatctataaaaaaccagctgcagaactcctcccacatatcaaggatgcattgctagatgctgaagacatcattgatgaatttaattactatgagctcaaggcaaagatagaggggagaatagaggaatgcctaacatcgtctggatgccaggaattctatatgagtgtcattcgaggaagctttaacagagtgaaagaaatccaagagaagctagaccatctacatcgtcagtctatggacttgggcttgcattgtgcagcacaaagatttgacaaaattgttaggccagaaacaagttcttttcttaacagtcagatttttggacggcaagaagaagagaaaatggtgttggagttgttaggagtacaattacaagctaatgctggctacaaacgcaagcgaagcagtagagtggaggtcttgccaattgttggactgggaggtgtaggaaagactactttggcccaacaaatttgcaagaatcaaatggtgaaagctcactttgatatgatcctttgggcatgtgtatcagatgactttaacgcaaagaggttaactaaagaggtaatccaatcttccaagaaagaaacatcatttgacaatttggattctcttcagtctattttaaaagatactgttgagttaaaaaggtttttacttgtactagatgacatttgggatgatgtcatggcagatggtgggcaagattggcaaaggttttgtgcaccgttgtcaaatgctcttcaaggaagcatgattttgatcaccacccggtcacagaaagttgctgataaggtgcggacaatggattgttttccattagaaggtctaactgaagatgttttctgggaatttttcattgtacaagcatttggaactgagagtttatccaaatacccagatctggaggacattggtagaagcataattctgaaattgaagggttctccgttggctgccaaaactattgggcgtcttttgaggactaatttgcatgcttcacactga</cdnaseq>

Protein Sequence

<aaseq>MQMRFTKMSWGAAARGIQTATGFVTSVNTWAEFFNCLSSAISSA CSWINIHQKPQNDFVKEEIQHLQSDLWQLQTTLPKMRNLVEILEWQIYKKPAAELLPH IKDALLDAEDIIDEFNYYELKAKIEGRIEECLTSSGCQEFYMSVIRGSFNRVKEIQEK LDHLHRQSMDLGLHCAAQRFDKIVRPETSSFLNSQIFGRQEEEKMVLELLGVQLQANA GYKRKRSSRVEVLPIVGLGGVGKTTLAQQICKNQMVKAHFDMILWACVSDDFNAKRLT KEVIQSSKKETSFDNLDSLQSILKDTVELKRFLLVLDDIWDDVMADGGQDWQRFCAPL SNALQGSMILITTRSQKVADKVRTMDCFPLEGLTEDVFWEFFIVQAFGTESLSKYPDL EDIGRSIILKLKGSPLAAKTIGRLLRTNLHASH</aaseq>

Gene Sequence

<dnaseqindica>893..2170#gtgtgtgtgtttgttgtttattttcagaaggagcctttattgctgttttttttctctcttccttgctccttattcacctgtaagaattgggagcggcagattgaaggcaaagcgcaagtgctttgctttttcttggagtgtttctcaggtaattggaggttatattcatcattttaccagttgagcctgtaatccgtaaaaccaacactgttattgtgtttgtttgtttttgtttttgtttttgtttttttttttgcggggggctgttattgtgtgttaccatatgttttactgaacaaatgtttgcttctaacatcaaatggctacaattctgtcagcatctatgggttcaggttaattataagctgccatctatccctattggtgatctgtattatgtactgtctttcgccctctaaaagtgttttcttgaaacaatttgctgatgttgcgattgagactctatgcaactacaagttgttcctgtttttttctggatctggctgagtttgaatattgaattgcgtggaatgtgtttcattgaaatgtaattcagcaaaactttcaagagcattatgttattacttagaacacatatataaaatttttattcaccaattatttttcgtttacaaatacgccgtttcgcttattccccgaataagtgaatcgatggggctggtagtctctgtggtttgcactccatatgtctccgtgacatttttctcttccttttgcttttgtgaagacataataaaaaattttcttgctcttgcaggaatatgtgtgagttaagctttcagtgagggtgcacccaacattttaaggaattttttttataacttctaccattccacattcccagttttatccctgttcttcacaccagtctatgcaaatgagattcactaaaatgagctggggagctgctgcccgagggatccagacagccacagggtttgttacaagcgtcaatacatgggctgaattcttcaattgtctgagctcagccatttcatctgcatgctcttggatcaacattcatcagaaaccacagaacgattttgtaaaggaagaaatccagcatctgcaaagcgatttatggcagctacagacaactctgccaaaaatgcgcaaccttgttgagatacttgagtggcaaatctataaaaaaccagctgcagaactcctcccacatatcaaggatgcattgctagatgctgaagacatcattgatgaatttaattactatgagctcaaggcaaagatagaggggagaatagaggaatgcctaacatcgtctggatgccaggaattctatatgagtgtcattcgaggaagctttaacagagtgaaagaaatccaagagaagctagaccatctacatcgtcagtctatggacttgggcttgcattgtgcagcacaaagatttgacaaaattgttaggccagaaacaagttcttttcttaacagtcagatttttggacggcaagaagaagagaaaatggtgttggagttgttaggagtacaattacaagctaatgctggctacaaacgcaagcgaagcagtagagtggaggtcttgccaattgttggactgggaggtgtaggaaagactactttggcccaacaaatttgcaagaatcaaatggtgaaagctcactttgatatgatcctttgggcatgtgtatcagatgactttaacgcaaagaggttaactaaagaggtaatccaatcttccaagaaagaaacatcatttgacaatttggattctcttcagtctattttaaaagatactgttgagttaaaaaggtttttacttgtactagatgacatttgggatgatgtcatggcagatggtgggcaagattggcaaaggttttgtgcaccgttgtcaaatgctcttcaaggaagcatgattttgatcaccacccggtcacagaaagttgctgataaggtgcggacaatggattgttttccattagaaggtctaactgaagatgttttctgggaatttttcattgtacaagcatttggaactgagagtttatccaaatacccagatctggaggacattggtagaagcataattctgaaattgaagggttctccgttggctgccaaaactattgggcgtcttttgaggactaatttgcatgcttcacactgaaataacatattgcagagtgaactatggaagttggagcaggacaggacagatattctacctgccctgcgtttgagttatatgtatttaccaccccatctaaagaggtgtttctcattttgtgctgtgtaccccaaagactacaggtttgaaaaggataccctagtcgacatatggctggcagaaggtttcgttgaacatgcaagtagctttccaactgtaactgttgtgcagcaatattttgaagagcttctaagccgatccttctttcagaaagtgacgcacggcaaatatgtgatacatgacttgatgcatgatatggcacagctagtttcgcaagatgaatgcttcatcataaggaatgcaaatgaccttcgaacaatcccttccaatgttcgccatctatcaattttcacaaaaagatatattggatgccatgatttaatgggactatgcaggtataagaaactgcgcacccttttgtgcagtaaagcttttatcaaaggtgagtttgcttctgtacttggcagctggtttaaggagcttcaacacatccgtgtgttgagttgttctcttcccatgatagaagatatacctgagggcatcagcaacttaaagcttgtcggctacatttacttctcaagccaacgtactttcagcatccttccttcgtcattttgttgtctatataacctgaaactctagatgcttcaacatgtgttttcagaagcctgccttgtgactttggaaacctgatcagcctaaggaaatttagagcgaaaaatttcagttatctcccaggagaggattcacgcatgcagtttctaagaggagagagaatcaaagtgttgaaatatgtaaatcaggtacagggaagtttgcttgtcaatttgcctggtctcaaaagtaaaaagaatattggccttactgtgttgaaaaaggagaataatctctactctctccatatatctcaatttgcagaggatgctagatatgaacaggaacaattggaagtctgtgaaaacctacatcctcatccggatcttcaacatttggaggtcactggttaccaaggagagaatttttgtcctagctggttcctgcctgacaacttaccaaacatgatatcgcttatatttgaggagtgccataatgctaagaagatatcattgcatagattaccatgcacaggattccagtatttgattaacctgtacatcatcgaatgcacaaatttatcaagcatcgaacaatttctgcaaccatgtcatataccggctatcaaaatgataagcataaagggatgccaggagttatcgttgatatcagctgaaagatttggaggttttcgtttcttagaagctttggtgatccgtgattgtccaagaatcagttgggaaaatgggctggcattgccgcccactctcacaagcctttcgttggtgaggtgtggggatatttctaagtggatacctgactgtctactgaacctatcctcccttgtccgcctgcagttggttgggctttcagggacaatgtttattcctgggagtatctggaggaataatcttccattgctagattacttggagatctgtaatttccaagagcttcgttttactggtgtaccagaagcaattgaagaaataaacaatgtgcttattgacaagtgcccaatgctgaaagaactaaagcagcctttctccagaggtgatgttaccttcttgtgggggattccgactagtaaatggtacttgtcttaactgattcctttcatcgaattaccgtgtgttatactaaagattggggtttgctaactttaagtcatgtaaaaagttgctaatttttcatcacctaaaattacagatttctaaccc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0489800, RefSeq:Os12g0489800