Os12g0496900

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Revision as of 10:30, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0496900| Description = SSXT family protein| Version = NM_001073337.1 GI:115488635 GeneID:4352256| Length = 4705 bp| Definition = Oryza sat...")
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Gene Name

Os12g0496900

Description

SSXT family protein

Version

NM_001073337.1 GI:115488635 GeneID:4352256

Length

4705 bp

Definition

Oryza sativa Japonica Group Os12g0496900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:19000607..19005311

Sequence Coding Region

19000799..19001119,19001190..19001274,19003411..19003487,19005135..19005209

Expression

GEO Profiles:Os12g0496900

Genome Context

<gbrowseImage1> name=NC_008405:19000607..19005311 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:19000607..19005311 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagcagcagccgatgccgatgcccgcgcaggcgccgccgacggccggaatcaccaccgagcagatccaaaagtatctggatgaaaacaagcagcttattttggctattttggaaaatcagaatctgggaaagttggcagaatgtgctcagtatcaagcgcagcttcagaagaatctcttgtacttggctgcaattgctgatactcaaccgcagaccactataagccgtccccagatggtgccgcatggtgcatcgccggggttaggggggcaatacatgtcgcaggtgccaatgttcccccccaggacccctctaacgccccagcagatgcaggagcagcagctgcagcaacagcaagcccagctgctctcgttcggcggtcagatggttatgaggcctggcgttgtgaatggcattcctcagcttctgcaaggcgaaatgcaccgcggagcagatcaccagaacgctggcggggccacctcggagccttccgagagccacaggagcaccggcaccgaaaatgacggtggaagcgacttcggcgatcaatcctaa</cdnaseq>

Protein Sequence

<aaseq>MQQQPMPMPAQAPPTAGITTEQIQKYLDENKQLILAILENQNLG KLAECAQYQAQLQKNLLYLAAIADTQPQTTISRPQMVPHGASPGLGGQYMSQVPMFPP RTPLTPQQMQEQQLQQQQAQLLSFGGQMVMRPGVVNGIPQLLQGEMHRGADHQNAGGA TSEPSESHRSTGTENDGGSDFGDQS</aaseq>

Gene Sequence

<dnaseqindica>4193..4513#4038..4122#1825..1901#103..177#aaaccctccaaagtccaaacccctctcctcctcctctccaacgccataaaccacagagagggggagaagaagtggaagcgtgagccgccgcagccgcacgcgatgcagcagcagccgatgccgatgcccgcgcaggcgccgccgacggccggaatcaccaccgagcagatccaaaaggtgcctcctttgtgcccaccccccccccccccccccccttttctcttccggttcttggccccggttcgggtgcgccgccctcgcttcttgggagggtttttttggggggcaaaagatttgatctctttttttatttttgcccggcctcctcgaatggtgctaggtttgccagcgttcgattcgattaggggtgggttagggtcttagggatattggattggtaaagattctggcttttttgattagtttcaacttagttgatgtgatttgaagagtatttgacgggcattggttgaagttggtgttgtgagcaccgcatggttggcgtgctcgtcatctgactcgataaagaacgactcgtttgggttatccgggcggtagagtgatctgtaattatatggtgatgatgttggtttgataggagatatgctgacttgttctcggtttattggagaagatgtatcatttgtgataaaaaaaaactaagttatgaacacctggagtacaacttttgactagattgggcttgaatctttgcttgtgtagcttatgtttattgattgcaatatttctactcgacatggaactatccatcatccatgaccactccagccggaactgaacttatgtttttttatgtgttctttagtattcacatcatgacagtcatcagtcattgtctataaagtattattctatgcctgaaacattttcctgcattaatatcaacttggcacttgtatggaaccatttctttgtcttagtgcgattgtcctgttcttttgtagagtatgctattctatagcagattttagttatgtttctgttcgtggatgactgggtttattgggatttgttgaagtacaggtatactccagtccttgtgggctttagatgtagtttaaaacttacaacggagaaaaaaaagttatgttaactgactttcaacaatatcaactttcacttaaattcttaaagaaaaaactcatcgctttgttagttgatttctgtctcgtttgttaattttccaatctttcaggcgttgctcttttcttttggagctaatagctgtgatcacctagcagttcatgtcttcatgtctaaatggcagatttgtattgtgtgctcccactagattcagacatgcatgcttttttcttcttaaggctggtgatgcatattctgcttaaattgggtcatggtttgctctcttgtactagaataagctaaaaatagcgcactaatgtctctctgctaagatgaataaaatagcagcttggggccgttttttgaaccactttactttgcaatccatattattagggtgctcatgcttatacaggtcatattctggcatacattttcactttgcatacttgtctgaatgatattttccttattatacttggattaatgccctgcacctactagcattgtaacttgactttcagatgactaaataatctcttgtgctgactttaatccttatgtttcctgcaaactgcataaattgtaatagtgcatttctaaaattactatcttgttccttatatatttcacatggttcgcccatttgcatttactgattctgtggtttcattgttgtaaataaccattttcccttacagtcttaattcatttttgcagtatctggatgaaaacaagcagcttattttggctattttggaaaatcagaatctgggaaagttggcagaatgtgctcagtatgtaaacggtcttttatgagattttacgttatgacatgatcctttttgtgtgttaatattaattcatcctgcttagtagtctcgtaattgcattgttgaataatttctcgttaacattaatatcttccttttttgttatctacactcagtccctcaccattagttaattgtatacaattattcatttattgtgctgccgtatataacaatgaaattgccactctgctgttgttatttcaaatttgtgtttatgcattgaataaacaagcaactgaaaactgctgcgatatccaatgatattttggcctggtttctttctcagccgttaggtttaatatttagaagatctatgtagctcttgtcactgatgaaagcataccatgcttggatggttcaacacagaataaacagtattgctaaacagcaaaacatggatcattcaagtatggctttttgtgcagtacgagttataaactgcagctgagttcttgttttgtaccatcttgaggcttgagccactatacaaaattaatcctagaagggtcctggcattgtggcatatgcaaagttcatatgaacactctatgaactgtagacagcaaatatgataacatctgttttttaaatgataatgtttgattaaatttctattttcaaacttttagatgatatgttaaattgttaattatctgactataatactgttttttggtatctaattatataagtcagggtttttttatgataattttacttagatttacatagagtatagaccttcatctcctgactcttcgggacgtgtactggtgtggattttgacacaatccatgcactacggtgaacgaagtattacagtgctatacactgaacacatattggcatacaatttcgaatataaactggttggttctcacatgactagtttatgtagcgttgcctatagtggttctttatattcaatgcaataaaagcatgtattcgaagaccgtgtatctttcaaagaatatgcaagatgtatcatcattagcaactatatgtacatcctcactcttcagccaatatattccatgtttgatttgcatcttgtgtcttctgctgcccaaaggatcaattgctttttttttgggtgcaaacgaagcaaattaccagcatgctaaatacctaggaatttccacttgcaatggctgagtgtcaagctggcaagcatcatgttaaaatttatgaaatcttatttcatctggtgtcacttgatatctccataaccaactgggaagtgggagggaactatcatgttatgccgtgatgataaagcccgaatcacccttcataatccgtcggaataaaattcaagttaaagcaacattctgaaatagctctaactgttagttctatgtggcagatgattattctccttggtaaacatcaatggaaaacaacacatttgatcttgctaggaacatggaaatacatgctttgtgcagcacctaacaattttgaactgtcaatatgcattttgtcattttaattccatgaagttaattgtgtaaaatgattcctagctatttggtcttacccgtttctttttttctttgactttagattgtaaccatgttggcttttgccctgtgactggcaagaacagtattgctgtcaacataacatgaacaatatttagtatgctattagtgccattagcatgcatgctattacctatgcaccatgcacgtcacctgtgcacccatggaatgtgtcgctaactagtcacctaccgacctcacatttgtgtttctttaggagtattggtggtaatatgtgataattaatccaatttactttccaagttcccattgcagtgcttgtattaatgaatttattttatatatgtgctcaccttgtttccatttatgaattattaggcggggcttaataagttaatatgtgataattaatccaatttactttcctttacacttcatgtagttatgaatttatttgatatatttactgaagatgctcttcatattgctaaacctatttgcctatatgaatgtgactatggacttccttctggaatagatggtgagaaaatcatttaatgatggtagttttatccccaatgatatttttcaggtatcaagcgcagcttcagaagaatctcttgtacttggctgcaattgctgatactcaaccgcagaccactataagccgtccccaggttcgtaatattccatacatctacacaacatcatttgttctgcatatactcattttatctccgcaaacagatggtgccgcatggtgcatcgccggggttaggggggcaatacatgtcgcaggtgccaatgttcccccccaggacccctctaacgccccagcagatgcaggagcagcagctgcagcaacagcaagcccagctgctctcgttcggcggtcagatggttatgaggcctggcgttgtgaatggcattcctcagcttctgcaaggcgaaatgcaccgcggagcagatcaccagaacgctggcggggccacctcggagccttccgagagccacaggagcaccggcaccgaaaatgacggtggaagcgacttcggcgatcaatcctaagggctaagttggcctttcaggtcgcgacgaaaaacaaaaaaaaaacatgtaggcaacgactgagtggagaggggatcattcctgtgcccttgaacggtgagtggccgtgatcttcgcctgatgatggtcagtggttgttacatttacctgtgtttttgagactttcagtctggtacaaacgtagattgctgc</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0496900, RefSeq:Os12g0496900