BGIOSGA013521

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Revision as of 10:03, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA013521| Description = cDNA clone:001-126-A06, full insert sequence| Definition = Oryza sativa Indica Group BGIOSGA013521, complete gene.| t...")
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Gene Name

BGIOSGA013521

Description

cDNA clone:001-126-A06, full insert sequence

Definition

Oryza sativa Indica Group BGIOSGA013521, complete gene.

LocusTag

OsJ_12494

Ensembl Transcript ID

BGIOSGA013521-TA

Ensembl Protein ID

BGIOSGA013521-PA

Length

4274

Source

Oryza sativa Indica Group 

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:34448939..34453212

Sequence Coding Region

34448939..34448998,34449108..34449158,34449254..34449326,34449558..34449676,34449759..34449832
,34450025..34450145,34450226..34450294,34450459..34450500,34451319..34451396
,34452368..34452426,34452504..34452588,34452887..34452975,34453065..34453127
,34453203..34453212

Genome Context

<gbrowseImage1> name=IndicaChromosome03:34448939..34453212 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:34448939..34453212 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGGATTTCCGGACCTCCACGCATCGGGAGAGGTGGATCTTCCAGACGAACGATCTGATGGATAGATGGGGGGCGGCGAACCAGCGGGCCACGGAGACGCTCGTTCAGTATGGAACGACGCGGTTGAAGGTGGACCCTGTTGATGGGTCGCTGTCGTACCCGGAACCTGCGCCTGATCATGTTGTAGGGAGCTCAGGTGTAAAGCCTCTGTCTTGTGAAGAGGAGCGATTGATGCGGGTATTTTATGAGCAAAAGATTCAAGAAGTATGTTCAGCATTTAAGTTCCCTCACAAAATCCAGGCTACCGCAATAATATATTTCAAGAGATTTTATCTGCAATGGTCTGTAATGGAACATCACCCAAAGCATATTATGTTAACTTGTATTTATTCTTCTTGCAAAGTGGAAGAAAATCATGTTTCTGCTGAGGAACTTGGTAAAGGAATTCAACAGGACCACCAGATTATTCTAAATAACGAGATGATTGTTCTCAAATCTTTAGATTTTGATCTGATTGTTTATGCTCCGTATCGATCTATCGAAGGATTTGTTGATGACATGGAGGATTTCTGCAGAGCAGGTAATGGTGAGCACCAACGGTTGCAGGATTTACGTCAAACTGCGATATCTCAGGTTGACAAAATGATGTTGACTGACGCTCCTCTTCTCTACACTCCTGGACAGTTGGCTCTGGCTGCTTTGCACAAATCCAATGATATGCACAAGATCCTTAATTTTGAAAGGTACTTGGAAAGTGTTTTTTCAAGGCAACATTCTGATTGTCCAATCGAACAATTTGTTGGGTCAATCAATATGATCAATTATTTGGTTGAGCAGCTTAAAATACCTACTCCTAAGGACATGAGGCATATTGACCGCAAGCTTAAGCATTGTTTGGATCCAAGCTCACAGGATGAGCATAAGAAGAAAGAGAAGAAGTCGAAGCACAAATCAAAAAGGGCAGCTAATGAAGCCCAACTTGACAGCTAG</cdnaseq>

Protein Sequence

<aaseq>MADFRTSTHRERWIFQTNDLMDRWGAANQRATETLVQYGTTRLKVDPVDGSLSYPEPAPDHVVGSSGVKPLSCEEERLMRVFYEQKIQEVCSAFKFPHKIQATAIIYFKRFYLQWSVMEHHPKHIMLTCIYSSCKVEENHVSAEELGKGIQQDHQIILNNEMIVLKSLDFDLIVYAPYRSIEGFVDDMEDFCRAGNGEHQRLQDLRQTAISQVDKMMLTDAPLLYTPGQLALAALHKSNDMHKILNFERYLESVFSRQHSDCPIEQFVGSINMINYLVEQLKIPTPKDMRHIDRKLKHCLDPSSQDEHKKKEKKSKHKSKRAANEAQLDS</aaseq>

Gene Sequence

<dnaseqindica>1..60#170..220#316..388#620..738#821..894#1087..1207#1288..1356#1521..1562#2381..2458#3430..3488#3566..3650#3949..4037#4127..4189#4265..4274#ATGGCGGATTTCCGGACCTCCACGCATCGGGAGAGGTGGATCTTCCAGACGAACGATCTGGTGAGGCTTCCTCATCGGTTTGTTTGCCAGGGCTGCTTTCTTTGGGATGTGATATGATATGATATGCCGTGGGTGGGTTGTGATGCTGGTGATTCTCTCTGCTTTGCAGATGGATAGATGGGGGGCGGCGAACCAGCGGGCCACGGAGACGCTCGTTCAGGTTGGGTTATCCCGGCGCTCTGAACCTAACTCCCTTGTTGAGCTTATTAGATGATAGGTGCTCATATCTTTTTTTCCTTTTGTTTCTTGGTGAAGTATGGAACGACGCGGTTGAAGGTGGACCCTGTTGATGGGTCGCTGTCGTACCCGGAACCTGCGCCTGATCATGGTACATTTCATTTAATGATTCTGATTGATTATATGTCTAGATGCGCAATGTGTTACCATCCAAATTAGCATCCTCATGTGAAATTCACTTCAAAGTTTTCTGCTTTAGTAGTTTCTCGCATAATCTACTTTGGACGATATATGCATCGAGTTCTGTGTTTCCATGGGAGTTTGTTCAGTGGACAACTTGCATCTAAGCGTGCTAGTATTGAAGCATTTGTTTTTTATTCAGTTGTAGGGAGCTCAGGTGTAAAGCCTCTGTCTTGTGAAGAGGAGCGATTGATGCGGGTATTTTATGAGCAAAAGATTCAAGAAGTATGTTCAGCATTTAAGTTCCCTCACAAAATCCAGGTAAAGCACTCCTCTTCCGAGACTCTGTGCCTTTGCTATCCTCATGATCCTGCGCTAACAATCTCTTATTGCTGCACTGTAGGCTACCGCAATAATATATTTCAAGAGATTTTATCTGCAATGGTCTGTAATGGAACATCACCCAAAGCATATTATGTAAGCAACACTTTTATAAGAAATCTTCTATAGATTGGAACGTACAAAAGGAGATAACCTGATGAGTAAATTACCTTTTCTTGTGTCCTACTCGAAGAGATAATGTCCTCTGCAAGTCATGGTCTTTCATGATTCAGTTTGTATTTTTTTTTATCAGTTAGATATGAAGTTAATCAGTTTTTTACTTGACAGGTTAACTTGTATTTATTCTTCTTGCAAAGTGGAAGAAAATCATGTTTCTGCTGAGGAACTTGGTAAAGGAATTCAACAGGACCACCAGATTATTCTAAATAACGAGATGATTGTTCTCAAAGTATGCCATTTCCATTTTTTTGTCATTTTACCTCCTCCAAACCAGCAGAACATGACATTACATTTCTTACCTTATTCCAGTCTTTAGATTTTGATCTGATTGTTTATGCTCCGTATCGATCTATCGAAGGATTTGTTGATGACATGGAGGTAAGTTTCATATTTATATGTTTCTGCTAACAATGTTCACCTTGCCATTTCCCTTGTATGGCTAGTGAACTTTGAAATGCAGTACCATATATTTGTCATATATTGCTTATCCTAGTGTAGTGGTTTGGTCTCCATTGACTAATGGGGTTTCTTTTTGTATAAAGGATTTCTGCAGAGCAGGTAATGGTGAGCACCAACGGTTGCAGGTCATCCATTTCTTATACCCTTTTCACCAGAAATATAAATATCGCAGTAACAAAATGTTTGTGCATTTGCTTTTGCCAACATTTCAGATAGCACTGGTGTAGCTAAATCATGTTCATCTGTATGATATTTCCACAATATTTCTGAAAATTCCAGCCGCTTACATCCAGTTAGTATCCATTACTATACGCAATCCTTTGGAATCAGAATCACCATGAACTTTTTTTGTTTGTTTAACCTTGAACTCACAGATGAAGGTAGCTGCACAGGATTGACAATATTTTAGATGCTTAGCTAGTTGTTAATACTAATTTTGCCACGCAACAAGAAGGAAAAGAGCTAATTTTTTGGTAATTTTATTTAGACTTCATTGATGGCTGTCCAACCATTTGATAAAGAGTAATGGTGGATGAATCTAGTTCTGCAAATTCAATTGTATACCAGAAATGCTTTAGTTATGCTGTTTTGCATCAATCTAAGGATGTTGAAAGACAAAGTGTGTAGGTGATATATTTTAGCATGCATTCAATGTTTTGTGCTGAAATTCGCTTCTCACTTTATTTAGACAGCTGACACATGGTTGACTGCCAGATAAGCTTATGTAGGATAAAGTCTTGTTTTTAATTTCTTTCTTTAGCTTGCACAAACGGTAATTATGTGTACTGAATAAGGAACAGTCGTAAGCTCTTATTTGAGTACCGTGTTAGATATCATAAATGCTATTTCAGCTTATTCCCTGCATAGAAGGATACACTGGAATTATGACATTATAGAACATGCAAGTTTTATGCTACCTTGCTGATGCTTCAAATGCTTGTAGGATTTACGTCAAACTGCGATATCTCAGGTTGACAAAATGATGTTGACTGACGCTCCTCTTCTCTACACTCCTGGACAGGTAATCATGATCAACATGTTTAATCTTAAACTACATCATTTTCATTTTTAGAAGAGTTAATTGCACAATGGGCCATATATTATTACCAAAGATTCATTGGGACTACCCTTGAGACTATTTTCACTTTGGGCTAGATAATTTTTCCTTTACATTGCAATTTGGATCATCCCATCTTTCTCTCTGTTATACACCAAAGTCACTGAGTGCCATAGCAACATCCGTGTCATCATCCTCATCCCAATCTGCGCATGTCAAGCACCTGCACGAGCATCTGCACCAGCCTTGTCCAGCTAGCAGGTTGTCGATGATGGTCACATATGGGGCCTTTCTTCCTGCCACCGCTGGCAGTTGTGTCATTGAACCCTACGCTTGCCGAAGATGCTCTCTTGGCAGCACAATAACATTTGCATCCTCCAGTGCTGGCTGGGGGACCAGGACCACAGCCATCCTGTAGCAATGGCGGGAACACCGCTCACAAGATTTGCCATATTAACCCATGAAAAGAACGAGGAGACCATGCATGGGAAGATGTAACGCTTCCTCGTCCATCGATCGTGGTGGCATACCAAGCTTTGGCGCCCAGATATAACGCTAAAGTCAAATTGGAGCTCGGGCGCAGTGCTCCTGGAGGTGGAGCAACAGCTCGAGTATGGTTCTGCAAGGCGCTGATGCAGGGCAGACCAGGCTTCAGCTTCTTCCCAATGAGAAGGAATAGATGGTGGAGAGCAGGTCTAATGTGAAACTTTTGCAACTTCACATAGCCTAAAGTGAAAAGATGTGCTCATGCCTAGTCCAACATGCAACATTGGTAAAAATAAATGGCCTGAAGTGCAATTTACTCTTCTTTAAAATTATTAGTTTACCTAGTGTCTGATAAGAAAGCTTAGTCCAATGTGGTTAGCTTATGAGCCTTCAAGTTTGACCAAACTTTTTATGTTATCTGATTAGTCATTATATTCCAATTTTTACAGTTGGCTCTGGCTGCTTTGCACAAATCCAATGATATGCACAAGATCCTTAATTTTGAAAGGTATTCTTGCGTGATTCTTTTTCCTTTTCCATTTCTTTACTCAATTTTAACGTTTTTAACTTCACGATCGTTCACAGGTACTTGGAAAGTGTTTTTTCAAGGCAACATTCTGATTGTCCAATCGAACAATTTGTTGGGTCAATCAATATGATCAATTATTTGGTAAGAACTTTTTCCCCTTGGTTAAATACATCAGTATAGTCATGTAAACTCTGTTGCTTGACTGAACACAAGTAGATACTCAGAAGGGTTTTGCTACGAAATTGAATGGTTAAATTATGGTTTTGCTGATGTATAAAACCCTGTCAAAGTACAGTCATATCATTGCTGGCAAAGGATAGGGCTTTCATATGGCCAATGTTTTATACTGATGTGGCCACTGTTATGCTCTATTCAATAGTTATTATTATACCTTTGGGTTTTTGACATTCCGTTTATGTTATTTTCATATTTTTTGCAGGTTGAGCAGCTTAAAATACCTACTCCTAAGGACATGAGGCATATTGACCGCAAGCTTAAGCATTGTTTGGATCCAAGCTCACAGGATGAGTAAGCTTTATATCATTTATAAAAAGCCAGCATTTCATCCATGATTATCAGTAATTGTACTCATTTTTGTTATTGCTATATACCTGTAGGCATAAGAAGAAAGAGAAGAAGTCGAAGCACAAATCAAAAAGGGCAGCTAATGAAGCCCAACTGTAAGTCCTGTCACTACCAACTCAGATTGTACCCATGCTATTTCTAGTTCTTGTTTCTGAATTGCTTCTCTACAGTGACAGCTAG</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA013521

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=BGIOSGA013521&oldid=58344"