Os12g0500700

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Revision as of 10:30, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0500700| Description = Similar to Vacuolar sorting protein-like| Version = NM_001073351.1 GI:115488663 GeneID:4352271| Length = 5230 bp| D...")
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Gene Name

Os12g0500700

Description

Similar to Vacuolar sorting protein-like

Version

NM_001073351.1 GI:115488663 GeneID:4352271

Length

5230 bp

Definition

Oryza sativa Japonica Group Os12g0500700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:19200478..19205707

Sequence Coding Region

19200578..19200580,19200686..19200760,19200904..19200978,19201092..19201164,19201403..19201447
,19202084..19202195,19202661..19202733,19203045..19203089,19204083..19204138
,19204237..19204412,19205156..19205343

Expression

GEO Profiles:Os12g0500700

Genome Context

<gbrowseImage1> name=NC_008405:19200478..19205707 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:19200478..19205707 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaactacatcgtcggagcgttcaagccgccctgcgacatctccatcgccttctccgacgccaggtcgcggaagcagatcgcggtcaagaatgacaatgggaggacggtgatggtgccggtcttccagagcctggagaccatatccggggaggtgtcggtagtgccggttccgggcaagaggatcgagcacttgggtgtcaagattgagttactgggtcagatagagctttatttggagcgaggcaaattctatgacttcacttcattggtgcgtgagctagatattcctggtgaaatttacgagaagaaaacatatccattcgagttttccactgttgaaatgccttatgaatcttacaatggaacaaatgtcagattaagatatattttgaaggttacgatcagccgaaacattatgggcatgggcagcattgtggagttccgtgagttctgtgtaagaaattactctcctgcccccacaatcaacaacagtatcaagatggaagttggaattgaggattgcttacatattgagttcgaatacagcaaaagcaagtaccatctcaaggatgtgattattgggaagatctactttcttcttgtcagaataaagataaaaaacatggaactagaagtacgtcgtagggaatcaacaggagcaggctctagtgcatatgttgagactgaaactcttgcaaagtttgagttgatggatggtgctcctgtcagaggagaatccatcccggtgaggctattcttgacgccttacgagctgaccccttcgtatcggaacataaacaacaagttcagcgtcaagtactacctgaatctggtccttgttgatgaggaagataggaggtacttcaagcagcaagagatcaccatgtatcgccttctagaaaccccccaggcttcctag</cdnaseq>

Protein Sequence

<aaseq>MNYIVGAFKPPCDISIAFSDARSRKQIAVKNDNGRTVMVPVFQS LETISGEVSVVPVPGKRIEHLGVKIELLGQIELYLERGKFYDFTSLVRELDIPGEIYE KKTYPFEFSTVEMPYESYNGTNVRLRYILKVTISRNIMGMGSIVEFREFCVRNYSPAP TINNSIKMEVGIEDCLHIEFEYSKSKYHLKDVIIGKIYFLLVRIKIKNMELEVRRRES TGAGSSAYVETETLAKFELMDGAPVRGESIPVRLFLTPYELTPSYRNINNKFSVKYYL NLVLVDEEDRRYFKQQEITMYRLLETPQAS</aaseq>

Gene Sequence

<dnaseqindica>101..103#209..283#427..501#615..687#926..970#1607..1718#2184..2256#2568..2612#3606..3661#3760..3935#4679..4866#aatttccatccgccgatcccctccgatctcgaattctcgacctcccttcctccttcgccgccgccgccgccgctcgtcgccggccacctccaccgccgccatggtaacctctccccaactgcatcaggagtagcggacacacccctgctccgccctaaccaaaaccctgacgacgagcttctctctgtctctgtgtgtgtgtggccagaactacatcgtcggagcgttcaagccgccctgcgacatctccatcgccttctccgacgccaggtcgcggaagcaggtaagctccttccccgccttccccgttcccctatcgcctccgcgcccgcacgacccgggtggattgggttcttgtaaggatcgttgcgagcagcgccgcccccaatattggttggttcactcgtgtgttttgctgttgtgcagatcgcggtcaagaatgacaatgggaggacggtgatggtgccggtcttccagagcctggagaccatatccggggaggtactgttgtttgttcagcttcatcctaccttctgtgattcttctggctggagatgggtgtgttggggaggatttgtgaaatgcagttgatgacatgatgtgtgtgtggtcaggtgtcggtagtgccggttccgggcaagaggatcgagcacttgggtgtcaagattgagttactgggtcagataggtatgctatgctaaattgcggatttcgcaagcctcaaagtgactcttcaatatatgtggtggcactttagagtatttttctattcacctctaaattactatacctttttttgttgtttttgttgtgcacaacctttgtgtataatcaattgtttagacaatctgtttagctgtcaatgttgtaagttgttctgattgtcccaacttcatctaatcttcctttgggtacaatgttgcagagctttatttggagcgaggcaaattctatgacttcacttcattgggtgagtgctgaatatatatctgatgatttttattgatcagggcacttcgataagtttatatggatggcattgctttggaatgcatgtgattctttcacctgtttgtttagtataactcttttcatcctgatactttcctgggattgtagaaatattagctggcattgttgggttttttacttttaatgccttcgatctgcgagagggagggagagagggagggagggagtttatttgatgtttaaaattctttttagtagtggtgagaactatatgtataaatgaataaggctgagagattagcagtacatatttgttctgaaattactcaggtatggaaagctattatgggcatttatcatatcatcatcaccgttcacccaaccgtctttcccaatggtcactatacctgatattatggctggtacatgctggtgttggataaaagcagctgctaggagtctggaaacagaactagaaccatcaagcatacagaagaatcttcagagatttctgttcagctgtttgtttgttttttcttggttgctgatgcttgcttgcaatcatgaagctatttcataaccaggcacctgcaagaagctaccatgatctgaggtgtcttctttgcccatgcagtgcgtgagctagatattcctggtgaaatttacgagaagaaaacatatccattcgagttttccactgttgaaatgccttatgaatcttacaatggaacaaatgtcagattaaggtatgcaaatggtatgttttaaagttcctttattaatttttagggaattttaacattgaccagtgctgtgtctctataagtcaaggacgcatggctcactctgcagttgtatcagagatgatttcttctgaatgatctgtctgtgtaatagtatacaacagtgtaatataaagaatatcccatttgatctacaatattgacttaactgaaaataattacatatttcttagacttgtgctgttgtgcatgctcatatctactcaatctgagtgggacacaactatatatgtttttgtttttaccctagtatatttactgtataagcaaattgtggttccggtttatattaatcattacaactttctggacacgcaatatgagttagtaatgggtttgtcatttggtgctgcataaatagctttagtgaaatatctataaaggtaaaactaacacttatgcttttagatatattttgaaggttacgatcagccgaaacattatgggcatgggcagcattgtggagttccgtgagttctgtgtaagtctcgagatgatcatgtgccagtgtgccaccagcattgatgaaaacaatgtgtttagttatttattaccttttttaaagacaagctttaaatttggtaatttcatggatttcattggattttatgtaggcttattatttattattgtgttgtgaattgtcacatgattcctgatattcttttcctgaaacttcagtagtattttcatatttcaaaaataaattcaacacattgcatttctggtgttgtagtatcatctgcataatatttttctataggagttttaatttttttatattatttacaggtaagaaattactctcctgcccccacaatcaacaacagtatcaaggtgagttgtcattgatgatgtaagatgcttttcatttcatacctttcagatgtgtctgtctatggcacgtcttcacaaaacaatacagctcctagtatttgtattgtgtaatgctagtagtttacctggagatcacaattcacgcatccatgcaaatacatttggtaatatttcaggagcgtgtagaggaagcgcacacgtgcgtgtgcatatggtagtgtgcgtgtgggctgtgtgcatccagttctgctttcttagagaagttctcaagtagcttatctggtggcttcaccaatgcttgcaggcttaacctatctggcttaactaggttgttcaacttccagtccagtcctctgcatggtgcaaagttatgcacatccactttaccaggattgtacagtcctaatgtatgccttaagtttatttttgttttggtctttttgggcaagtgacaattgtatttattctcagaaacaaagttgtctggcatgatattatgagttttgataatatttcctaaagtagcggaaaatttaaaacactacaaccctccaggatggaccctggaaatttgtgatttgtgcatctcacaaatggtggttcttcctacttttgatttttcatcagtcaagtattcaacaataggcaccactttgcaaatggtgtctgcatttgatggttaattgactaattcttatagttgattcccctgaaatatgctgattagatcgcttcgttaagatcgtaccttttaattgtgcttatcagctgctattgttttttctgatattcctgtagattgtagctgcataatattttattccgttgtggccaacagtattttttttcttgactaacatacactgttcggcacttctatttcttgactaacatgctattcgccatggtcacagtgatgctttatttagtgtgtgtgaaagacatgaagacatatttggttatgtaactcttgatcttgcatgttcctttcagatggaagttggaattgaggattgcttacatattgagttcgaatacagcaaaagcaagtaagaagataggcttagttggctgtctgttctgacatgttcctcaatgtggcatccacagcgtttgcttacattgaaacattcttattcttattcaggtaccatctcaaggatgtgattattgggaagatctactttcttcttgtcagaataaagataaaaaacatggaactagaagtacgtcgtagggaatcaacaggagcaggctctagtgcatatgttgagactgaaactcttgcaaagtttgagttgatggatggtgctcctgtcagaggtacgtttttgtaatttttttcatttttaatatatttttgaatgtacagttcctttacatgctgatccttgtcttgttgcttgatatttaaagtgacatgctttggagttataaataacttatttgtggaccacatggttgcatgcttttcatgaatcttttttgtggtatgatagttgcaacaatttgctgattaccttaaactcaaagcttggtagtaacgtttgcaaaacagcaaaacacatgaattttaatgaatttcaagcctatatgatactctggtagatctgtagatgcaagtctattttagttatttagtgatcctgcaggggtttcttctcaattatcacgatgcactgtggaagtgcactttccctgcttgaaacaattcctatatactttaattatgatttaggaaatatcagccccagtagagctaaacattcacttgagaactttccaacttgatcccatgtatacttgaagtaggactggctgcaaggatcctaattaatactaaagcaaattgtgtggtgcataaagtaatatcaacatttccttccgatgtttatagaggtaaaagttataaccgtcatattccgtttcgttcagcaccgccaacgttcaaagcttctcattctagtgagtagtgatattcggtatttagcttcttgcatgatctctctgcttgcaaggatattgctttgctgtgaacttgaggtaactgttttttttttttccaggagaatccatcccggtgaggctattcttgacgccttacgagctgaccccttcgtatcggaacataaacaacaagttcagcgtcaagtactacctgaatctggtccttgttgatgaggaagataggaggtacttcaagcagcaagagatcaccatgtatcgccttctagaaaccccccaggcttcctagattccaaactggagcagcaagatgtttttcgattctcaggttttgtacaagctagcatcgaggttagggcaatggcgtacttacatgtatataaactccagaagagctcggcagttcactagtgctgctctccaaatcacatttctttgtttctgtatcttcttgtcctctgtgtgcttatggtagaccctttgattcatgtggagtatatgtgcattacctccccctgtttatttctgtttcttgaaagtaatctgtccgaagaccttatgtgtattatctcacaaggatctttgttaattcacttgattgaagttttgcagtgatgattgaagttttgcagtgatgcataacatgcttcatt</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0500700, RefSeq:Os12g0500700