BGIOSGA013798

From RiceWiki
Revision as of 10:08, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA013798| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA013798, complete gene.| tag = OSJNBA0...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA013798

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA013798, complete gene.

LocusTag

OSJNBA0028F23.2

Ensembl Transcript ID

BGIOSGA013798-TA

Ensembl Protein ID

BGIOSGA013798-PA

Length

6365

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:38292075..38298439

Sequence Coding Region

38292075..38292335,38293161..38293339,38293513..38293597,38293677..38293993,38294154..38294277
,38294981..38295073,38295467..38295562,38295876..38296025,38296099..38296296
,38296584..38296739,38296889..38296996,38297163..38297297,38297380..38297535
,38297715..38297835,38298354..38298439

Genome Context

<gbrowseImage1> name=IndicaChromosome03:38292075..38298439 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:38292075..38298439 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCGATGGCCACCACCGCGCTCTCCGCCTCCCTCCCGCGCCTACTCCCGCCTCGCCGCCGCCGCTTCCCGACGCCCTCCTCCTCCTCCCCCTCCGCCGCATCCACCTCCACCTCCCGCGTCGTCCGCCTGCGGGCCGCCGCGGCCTCGGCGCCATCCGAGGTCCTCGACTCCACCAACGGGGCCATCCCCTCGGGGAAGGGCGGCGGCGGGCAGCAGTACGGGAGGGAGTATTTCCCCTTGGCCGCTGTCGTCGGGCAGGATGCAATTAAAACTGCTCTGCTGCTTGGGGCAATTGACCGTGAAATTGGAGGCATCGCCATCTCAGGGAAGCGTGGGACAGCAAAGACAGTGATGGCTCGTGGCTTGCACGCTATGCTTCCACCTATTGAAGTGGTTGTAGGCTCGATTGCAAATGCTGACCCTAACTACCCAGAAGAATGGGAGGAGGGTTTGGCTAACCAAGTTCAATATGATGCTGATGGTAACTTGAAGACCGAGATTATCAAAACACCTTTTGTGCAGATCCCGCTTGGTATCACTGAGGATAGGTTAATCGGATCAGTCGATGTTGAAGCATCTGTGAAATCAGGAACTACTGTGTTTCAACCTGGCCTTCTTGCTGAAGCTCACAGAGGTGTTCTTTATGTTGATGAGATAAATCTATTGGATGAGGGCGTAAGCAATCTACTTCTGAATGTCTTGACTGAGGGAGTCAATATTGTGGAAAGAGAGGGCATTAGCTTTCGTCATCCATGCAAACCACTTCTAATTGCTACTTACAACCCAGAGGAAGGATCTGTACGTGAACACTTACTTGATCGTATTGCAATTAATTTAAGCGCTGATCTGCCAATGAGTTTTGATGATCGTGTGGCAGCTGTGGATATTGCAACACAATTTCAAGAGTCCAGCAAAGAGGTTTTTAAAATGGTGGAAGAAGAAACTGAGGTTGCAAAAACCCAGATAATTTTGGCAAGAGAATATCTGAAAGATGTTGCAATCAGCACAGAGCAGCTCAAATATCTTGTCATGGAAGCTATACGCGGTGGCTGTCAGGGGCACCGGGCTGAGCTGTATGCTGCTCGAGTGGCAAAATGTCTTGCTGCTATGGAAGGGCGTGAAAAAGTATATGTGGATGACCTTAAGAAAGCTGTAGAGCTAGTTATTCTACCTCGATCAATCCTATCTGATAACCCACAGGAGCAGCAAGACCAACAACCTCCTCCACCCCCACCGCCACCCCCTCCACAAGATCAAGATTCTCAAGAAGATCAAGATGAAGACGAGGAAGAGGACCAAGAGGACGATGATGAAGAAAATGAACAGCAGGACCAGCAGATACCTGAGGAGTTCATTTTTGATGCTGAAGGTGGTATAGTAGATGAGAAGCTCCTTTTCTTTGCTCAGCAAGCTCAAAGACGGCGAGGGAAAGCTGGACGAGCAAAGAATCTCATATTCTCATCTGATAGGGGACGATACATAGGTTCTATGCTTCCCAAGGGTCCAATAAGGAGGTTAGCTGTTGATGCCACACTTCGAGCAGCTGCACCATACCAGAAACTGAGGAGAGAGAAAGATCGTGACAAGACAAGAAAGGTTTTTGTTGAAAAAACTGACATGAGAGCCAAAAGAATGGCTCGAAAAGCAGGCGCACTGGTCATATTTGTTGTGGATGCTAGCGGTAGCATGGCTCTGAATCGCATGCAGAATGCGAAAGGTGCAGCATTAAAGTTGCTTGCAGAAAGCTACACAAGCAGAGATCAGGTTTCAATCATTCCATTTCGTGGAGATTTTGCTGAGGTTCTTCTTCCACCTTCAAGATCCATAGCAATGGCCCGCAATCGTCTTGAGAAGCTACCATGTGGTGGCGGTTCTCCTTTAGCTCACGGCCTTAGCACAGCTGTCAGAGTGGGTTTGAATGCTGAAAAGAGCGGTGATGTTGGACGTATCATGATTGTTGCAATCACCGATGGAAGAGCTAATGTGTCACTGAAGAAATCGACTGACCCAGAAGCCACTTCAGATGCTCCAAGACCTTCTTCTCAAGAATTAAAGGATGAGATACTTGAGGTGGCTGGCAAAATATACAAGGCTGGAATTTCACTTCTTGTTATTGATACCGAGAACAAGTTTGTATCCACAGGATTTGCCAAGGAAATTGCAAGGGTCGCCCAAGGTAAATACTATTACCTGCCGAATGCTTCAGACGCTGTTATTTCCGCCGCCACCAAGACTGCACTCTCGGACCTGAAGAGCTCGTGA</cdnaseq>

Protein Sequence

<aaseq>MAMATTALSASLPRLLPPRRRRFPTPSSSSPSAASTSTSRVVRLRAAAASAPSEVLDSTNGAIPSGKGGGGQQYGREYFPLAAVVGQDAIKTALLLGAIDREIGGIAISGKRGTAKTVMARGLHAMLPPIEVVVGSIANADPNYPEEWEEGLANQVQYDADGNLKTEIIKTPFVQIPLGITEDRLIGSVDVEASVKSGTTVFQPGLLAEAHRGVLYVDEINLLDEGVSNLLLNVLTEGVNIVEREGISFRHPCKPLLIATYNPEEGSVREHLLDRIAINLSADLPMSFDDRVAAVDIATQFQESSKEVFKMVEEETEVAKTQIILAREYLKDVAISTEQLKYLVMEAIRGGCQGHRAELYAARVAKCLAAMEGREKVYVDDLKKAVELVILPRSILSDNPQEQQDQQPPPPPPPPPPQDQDSQEDQDEDEEEDQEDDDEENEQQDQQIPEEFIFDAEGGIVDEKLLFFAQQAQRRRGKAGRAKNLIFSSDRGRYIGSMLPKGPIRRLAVDATLRAAAPYQKLRREKDRDKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDFAEVLLPPSRSIAMARNRLEKLPCGGGSPLAHGLSTAVRVGLNAEKSGDVGRIMIVAITDGRANVSLKKSTDPEATSDAPRPSSQELKDEILEVAGKIYKAGISLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISAATKTALSDLKSS</aaseq>

Gene Sequence

<dnaseqindica>1..261#1087..1265#1439..1523#1603..1919#2080..2203#2907..2999#3393..3488#3802..3951#4025..4222#4510..4665#4815..4922#5089..5223#5306..5461#5641..5761#6280..6365#ATGGCGATGGCCACCACCGCGCTCTCCGCCTCCCTCCCGCGCCTACTCCCGCCTCGCCGCCGCCGCTTCCCGACGCCCTCCTCCTCCTCCCCCTCCGCCGCATCCACCTCCACCTCCCGCGTCGTCCGCCTGCGGGCCGCCGCGGCCTCGGCGCCATCCGAGGTCCTCGACTCCACCAACGGGGCCATCCCCTCGGGGAAGGGCGGCGGCGGGCAGCAGTACGGGAGGGAGTATTTCCCCTTGGCCGCTGTCGTCGGGCAGGTGAGTGAGCGAGCAACTCTCTGCATAGCTTCTCCTGCATTGGTGTTGCTGAAGACACAAGTACCAACTACCAAGTAGTGTGGAGTGGTACAAGTAATTTGATTCCCCAGTTGAGTTGATCTGATGCATTTCGTTGCGCGGTATCGCGAATGCTGTTACAATAGAGATTCGAAATCCAACAGATGCATTTCGGTTTTTGTCGTGTTTTATGCTAATGCTATTGTAAGCGAATCAATCAGTGGACAAATAGTGATCACCGATCAGTACACAATGTGCCAATGTACATCTCTGAAAAAATGCCTTTGCTATGAGTTATTTTGCTGTCATACTCTCTCTGAAGATGAAACAAACGAGCTGGAATGACTTTCAAGCTTTAGTTTTCCTCCCATTGTTCCCTGCATCGAGTTATTTTTAGATAATGGAAGCTTTATTAATATACTCAGTCAATTACACAAAGACAATACAACCGCATCGGGCCCACCCCGGCCTCTGCATATGATGCACACAGCCAAAAGAACCAAAAACATCCTTCCCAAGCACAAAAGAATAACCAAAACATAGAGATTAGTGGCTATCAATCCGTAGACTAGATCGCCACCCATGCTCCTGGATAAAAAACTCCGTGTCACCTGGTCCAACTATCGTGATACTACCGCAATAGTATCCCGAAGTCCCGGTTTGTGGAGGACAGCCTAGGTACGTAGCCACCAGGTGACTAATGTAATAACCTGCAAAGGAGAAGACACCATCTTGTTATCAAACCATTGATTTATGGTCTCAACTTTGTATATGTTACAATTTTAACTTACCTTATTGTGCGTCCAGGATGCAATTAAAACTGCTCTGCTGCTTGGGGCAATTGACCGTGAAATTGGAGGCATCGCCATCTCAGGGAAGCGTGGGACAGCAAAGACAGTGATGGCTCGTGGCTTGCACGCTATGCTTCCACCTATTGAAGTGGTTGTAGGCTCGATTGCAAATGCTGACCCTAACTACCCAGAAGAGTAATGTCCCCAAATGCATGTCTAATAATGCTTCTAGAACTTCTGTTTAAGCATCCAAATTCTTCTTTTCACCCCCACAAAGTTTTACATACCAACTACAATTTGAATATGTTTACTTTCATTTCTGAAATGATTGTCAGGTAACTCACTTGATTGTTCTCCTCTTATGGCAGATGGGAGGAGGGTTTGGCTAACCAAGTTCAATATGATGCTGATGGTAACTTGAAGACCGAGATTATCAAAACACCTTTTGTGCAGGTATGCTGCATGGACTTTTTGTTTAAAAAATAATTTCGACATACCATTGTTAGTTCAATTTCAGGTTTCCCCTTGACAGATCCCGCTTGGTATCACTGAGGATAGGTTAATCGGATCAGTCGATGTTGAAGCATCTGTGAAATCAGGAACTACTGTGTTTCAACCTGGCCTTCTTGCTGAAGCTCACAGAGGTGTTCTTTATGTTGATGAGATAAATCTATTGGATGAGGGCGTAAGCAATCTACTTCTGAATGTCTTGACTGAGGGAGTCAATATTGTGGAAAGAGAGGGCATTAGCTTTCGTCATCCATGCAAACCACTTCTAATTGCTACTTACAACCCAGAGGAAGGATCTGTACGTGAACACTTACTTGATCGTATTGCAATTAATTTAAGGTACTTTAGACTATGGATCACTCACTTACTCACTTCTTTTAACCAAGTTCAGGTTGTATTATCTTATACACCCTCTGTTGGTGTGGAGAACATAAGAAAACTCTCAATGCATTTATGAAATACCACAGATTGCTCATTCCATATTGTTGTTTTGTTGCAGCGCTGATCTGCCAATGAGTTTTGATGATCGTGTGGCAGCTGTGGATATTGCAACACAATTTCAAGAGTCCAGCAAAGAGGTTTTTAAAATGGTGGAAGAAGAAACTGAGGTTGCAAAAACCCAGGTACCACCGATACTGTTAAACTAGGGATGTAAACCTGTAAGATAGAGTACCTCCTTTATTGAACTAGAATAGGGTGTAGAAACTATTTAGCTTTTGCTTTTTTTTTTGTATTGCACACAAATAGCTTTCTTCAGAACAGCGATATCTAATCAATCAGTATCACAAAATATGTGGATTCATTAATATGCTTCATAAACAAATGGTCACATCAGACAAGTTGATACATTGATTTTTGGATCTTTCTCACCTAATTACAACCTGTGCCATTTACATATGATTTTTCCCTTGCCTTCATAGTTGAAAGTATATACGCTATTCATGGTTCTGTATTTTGAGATCCCAACGTCATCCACTCATGCTGAATTAACTGCATGTACCCACATTTACATTATATTCCCTGTGTTGTTCTGCCACTTAACATATTTTATCTGGTCCAACATTCAAAACATCAATCTTTAATACGTATAAAAGGTATATGATGGCACACAAAATAATGCCATTCTATTTTTGTTGGACAATACTTTCACAGTTTATAACTTCTATTATTTTACTAGTATGTAGTATTGAAAAAATAACGTGGCCAAAGTCCCACATTGAAGACTATGGAAAATCATGAGCGACTTTAACTAGCAACGATGGAGGTTTAGTTGAAAACAATATTATGCACTGTTCATCTCACAGGTGGTAATACATGGTCTAACAGATAATTTTGGCAAGAGAATATCTGAAAGATGTTGCAATCAGCACAGAGCAGCTCAAATATCTTGTCATGGAAGCTATACGCGGTGGCTGTCAGGTTAGTTTATTTTGCAGTGAAAGAATTTTTTAGCTCTGTTTGGCTTAAGCTGAGTAAGGAGCTTGATTGGAATATTGCACTGTCCTTGTAATGGTCTGTAGTCTGTACCCCATGATCATGCATTCTGGTCATAACATGTGGCGAGGTGGCTAAAAACTGTCTGCTGTAACCATTGATTTCATTTTAGTTGTGTTTATCATGCCCTGAAATCGATGTGGCTTTGCATTATTTTCTGCTTGTCTAGATATTATACCTGTCCGCTGTGCACCATGTGGTTAATGTAATACCTGAAGCAATCATGGTTTTTGAGACACTGATGCTACTTTTTTGTGGTTAATGTAATTCAAAAAGTGGCTGTGTTCTCATGTAAATAAAACTGACACTCATTTGCAGGGGCACCGGGCTGAGCTGTATGCTGCTCGAGTGGCAAAATGTCTTGCTGCTATGGAAGGGCGTGAAAAAGTATATGTGGATGACCTTAAGAAAGCTGTTAAGTATACTTATGCCTGTGAATTCTTCATTATTTAATACAGTAAGACACCCCCTGTAATTTCCTGTTTACAACTATTCCTTTTCATCTCTTTACTGAAATGTACCGAAGGAAACATGCATCATGATTTGTTGTTAAGAACAAAATAGAAAGCTGCAAACTTGCACGTAATAAAAGTCACAGCAAAATAAATTTTGCCCTCGCATGGCTCACAATTTTCTTCTGCCATGCTGGCTGTTTGCATTAATGTAATGATGTCAGTATATTCTGAATAAAGTTAAGACATTTGACATGTGTGCCACCTTCTTGCAGGTAGAGCTAGTTATTCTACCTCGATCAATCCTATCTGATAACCCACAGGAGCAGCAAGACCAACAACCTCCTCCACCCCCACCGCCACCCCCTCCACAAGATCAAGATTCTCAAGAAGATCAAGATGAAGACGAGGAAGAGGACCAAGAGGTTAATACATATACTATTTAACTAACTTATTCATTTTGTTTTCTCGTAGCTCATTAGCTGTACTCTTGGACAGGACGATGATGAAGAAAATGAACAGCAGGACCAGCAGATACCTGAGGAGTTCATTTTTGATGCTGAAGGTGGTATAGTAGATGAGAAGCTCCTTTTCTTTGCTCAGCAAGCTCAAAGACGGCGAGGGAAAGCTGGACGAGCAAAGAATCTCATATTCTCATCTGATAGGGGACGATACATAGGTTCTATGCTTCCCAAGGTAAACTTCTTAATCACTTTATTGTACCAAGATTCCTGAATCCAGATCCTCGTTTCCTCTCAATTCAATGCCTGTAGTGTTTTAGAGTTTCTCCTATCTAGAAATGTGTGCATAATCATTTTGCCTATTTTCCTCTGATGCTTTCTGCTGTGTTCTGTCATTTACTGATATACTATCAAACAATAGTCATATACTGCTGTGTTGCCTTGTATTCTGCCGTTCCCATCCTATTGCTTGGCACCTTTATCACAAGTAGGCTCCAATTTGAACAGTTAATTGTGTTGTAGGGTCCAATAAGGAGGTTAGCTGTTGATGCCACACTTCGAGCAGCTGCACCATACCAGAAACTGAGGAGAGAGAAAGATCGTGACAAGACAAGAAAGGTTTTTGTTGAAAAAACTGACATGAGAGCCAAAAGAATGGCTCGAAAAGCAGGCGCACTGGTAAAAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAAGCCTCTGAGATTATCAGAATATCTGTTTGCTCTGTCCTTGTTATGAAGTAAACATTGTTGTCCGATCATAAGAGTTAACTGCTCTGTGGAATTACATTTTGACAGGTCATATTTGTTGTGGATGCTAGCGGTAGCATGGCTCTGAATCGCATGCAGAATGCGAAAGGTGCAGCATTAAAGTTGCTTGCAGAAAGCTACACAAGCAGAGATCAGGTACTAGTTGTTACCCTGTACGCCACCTTCAGTTGTTCTTCCCCTTGCCCCTGGAGATGTCTTTTTTTCTTTCAATGTGTAAAAGGTATATGGTTATATGGCTAGCTTGTATGCTATCGATTTTTATACTGGCCAATCTTACCTTATATTTTGTCATCTATCTCAGGTTTCAATCATTCCATTTCGTGGAGATTTTGCTGAGGTTCTTCTTCCACCTTCAAGATCCATAGCAATGGCCCGCAATCGTCTTGAGAAGCTACCATGTGGTGGCGGTTCTCCTTTAGCTCACGGCCTTAGCACAGTAAGAACTAAGCATTTTCTCGAACCTAGCTATATGTTACAGCCCATATGTATTGATTAACAATTCGGTTTTTACCTCAAAGGCTGTCAGAGTGGGTTTGAATGCTGAAAAGAGCGGTGATGTTGGACGTATCATGATTGTTGCAATCACCGATGGAAGAGCTAATGTGTCACTGAAGAAATCGACTGACCCAGAAGCCACTTCAGATGCTCCAAGACCTTCTTCTCAAGAATTAAAGGTACAACTCGTATCTAATATCACGTGGTAGTAATGATATGAAAAGTATTTATTTAAACTGGAAACCTGTGACCATCACTCTGAAGCTGATATGATGTACGTAAACTACTTCCAAGTTGCATTCTTAAAAGCATGTATCAATCACTCTAAAGCTGATACGATATATTTATCTTTTCCAAGGATGAGATACTTGAGGTGGCTGGCAAAATATACAAGGCTGGAATTTCACTTCTTGTTATTGATACCGAGAACAAGTTTGTATCCACAGGATTTGCCAAGGAAATTGCAAGGGTCGCCCAAGGTACTCTCGGCGTGATATCTCTTGAATTAGTAGCCTTCGTTTCAAATATAAGTTGTTATAGATTTGCACACATGAATTAAGAAAATAGCTTGAATAACTTTGTTGCCCTTCGTTTATACTACATTGGAAAAAAAGGGATCTATTTATTTATCAGAGGGGTACTATCGATCTTGTGAGGACAAACATGGAAGAAATAAAAAAAACACGCAGAAGTTTCAAACCAACATATATTTAGAAAAGAGTTGAAAAAACTAAAATGACCTACATTTGGAATTAGAGGCATATACACCATCTGCCGTAGGAATACCATTATCTTTCTTTTCTGCATCTTATTACACCATTACTTATGAGTTAAGATCATAAGTCTAATTTGCCACCTATTTTTGACTAGCAACCTTGTAATGTTGCCATCGCACAAAGAGATATCTTCCATGTACATCAATCACTAAGCACCAAAATACTGCCAAATGTTTGTGCCCAATCTCCTGATATAAACCTCTCTTTCTCGATATCTACAGGTAAATACTATTACCTGCCGAATGCTTCAGACGCTGTTATTTCCGCCGCCACCAAGACTGCACTCTCGGACCTGAAGAGCTCGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA013798