BGIOSGA013889

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Revision as of 10:09, 27 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA013889| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA013889, complete gene.| tag = OSJNBA0...")
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Gene Name

BGIOSGA013889

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA013889, complete gene.

LocusTag

OSJNBA0096I06.12

Ensembl Transcript ID

BGIOSGA013889-TA

Ensembl Protein ID

BGIOSGA013889-PA

Length

5198

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:39476734..39481931

Sequence Coding Region

39476734..39476819,39476903..39477000,39477127..39477265,39477360..39477388,39477504..39477600
,39477691..39477746,39477857..39477964,39478086..39478142,39478642..39478733
,39479372..39479456,39480391..39480543,39480683..39480777,39480920..39481096
,39481184..39481287,39481693..39481762,39481872..39481931

Genome Context

<gbrowseImage1> name=IndicaChromosome03:39476734..39481931 source=RiceIndica03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome03:39476734..39481931 source=RiceIndica03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGACGCCGCAGCTGCAGCCGAAGCAGATGCACTGGGCGAGGGCCGACTCCTCCGACTTCGGAGGCCAAATCCCCGCCCCTCGGAGCGGGCACACGGCGGTGAGCATCGGCAAGTCCAAGGTGGTCGTCTTCGGCGGATTCGCCGACAAGCGCTTCCTCTCCGACATCGCCGTCTACGACGTTGAGAATAGGATTTGGTACACACCTGAATGCAATGGGAGTGGCTCGGATGGACAGGCAGGCCCCAGTCCAAGGGCCTTTCACGTAGCTATCGTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAGATTAGGTGACTTTTGGATGCTCGATACTGACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTCGAGAGTTTGCTGCTGCTTCAGCCATAGGAAACAGAAAAATTGTTATGTATGGCGGTTGGGATGGCAAAAAATGGTTGTCGGATGTATACATCATGGACACAATGTCACTTGAGTGGACAGAATTATCAGTTACTGGATCAGTGCCACCTCCAAGATGCGGACATTCTGCCACAATGATCGAGAAGAGGTTGCTTGTATTTGGTGGCAGGGGTGGAGCTGGGCCCATAATGGGTGATTTATGGGCTTTAAAGGGTGTCACTGAAGAAGATAACGAGACACCAGGTTGGACACAATTGAAGCTCCCAGGACAATCTCCATCTCCACGATGTGGTCACTCAGTAACATCTGGTGGACCTTATCTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGGTCTCTGTTCAATGGAAGCTCTTAGCAACAAGTAATGAGCCACCCCCTCCTCGAGCATATCATTCTATGACTTGCATAGGGTCTCGATTTCTTTTATTTGGTGGCTTTGATGGGAAAAATACATTCGGGGATCTATGGTGGCTTGTTCCTGAAGGTGATCCTATTGCGAAACGAGACTTGGTTCCTAATGTTGATTCAGACAGCAAACCTAGTAATGTGACTGGTGGTGCTCAACATTCCGCATCACAGGAATCACAAGCTGGGGAATCTCCAATGATTGACTTGGCAAAACGATTGGGCATTTCACTTTCTTTAGAAGCTTCAGCAAGTTTTGTTGACGAGATCAATGATAAAGAACTAATTGAATTATCATCTATGCTTTTTGGTGAATCACCCCCTACCGGTGACCAGCATGCATGCATTCAGGCACTTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAGGAGCTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTTGGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGTTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTTTCCACCTGA</cdnaseq>

Protein Sequence

<aaseq>MTPQLQPKQMHWARADSSDFGGQIPAPRSGHTAVSIGKSKVVVFGGFADKRFLSDIAVYDVENRIWYTPECNGSGSDGQAGPSPRAFHVAIVIDCNMFIFGGRSGGKRLGDFWMLDTDIWQWSELTGFGDLPSPREFAAASAIGNRKIVMYGGWDGKKWLSDVYIMDTMSLEWTELSVTGSVPPPRCGHSATMIEKRLLVFGGRGGAGPIMGDLWALKGVTEEDNETPGWTQLKLPGQSPSPRCGHSVTSGGPYLLLFGGHGTGGWLSRYDVYYNECIILDRVSVQWKLLATSNEPPPPRAYHSMTCIGSRFLLFGGFDGKNTFGDLWWLVPEGDPIAKRDLVPNVDSDSKPSNVTGGAQHSASQESQAGESPMIDLAKRLGISLSLEASASFVDEINDKELIELSSMLFGESPPTGDQHACIQALRDHWTSIPANSIQLQELGPLLRDYQRLILRRYLENSFTSFYEKEVHRFFHLKNASELRMDDIPILLMEYGKLLST</aaseq>

Gene Sequence

<dnaseqindica>1..86#170..267#394..532#627..655#771..867#958..1013#1124..1231#1353..1409#1909..2000#2639..2723#3658..3810#3950..4044#4187..4363#4451..4554#4960..5029#5139..5198#ATGACGCCGCAGCTGCAGCCGAAGCAGATGCACTGGGCGAGGGCCGACTCCTCCGACTTCGGAGGCCAAATCCCCGCCCCTCGGAGGTAATCCTCTCGATCCAATCCACCTCAAATCCCCGCCGCCGCTGCCGCCACCTGAAACCATGTGAATTTTCGTGCCTCTGCAGCGGGCACACGGCGGTGAGCATCGGCAAGTCCAAGGTGGTCGTCTTCGGCGGATTCGCCGACAAGCGCTTCCTCTCCGACATCGCCGTCTACGACGTTGGTAATAAGCCCCACCGCTTGCTTCGCCTGATTGCAAGTGCCACGATTCAGACGATTGATTCTGTTTAGATAAGAGCGCTGAACCTTATTAGCTGTGTGAACTTCCGGATGCAACTCGTGTTTGCAGAGAATAGGATTTGGTACACACCTGAATGCAATGGGAGTGGCTCGGATGGACAGGCAGGCCCCAGTCCAAGGGCCTTTCACGTAGCTATCGTCATTGACTGCAACATGTTCATCTTTGGCGGCCGATCAGGCGGCAAGAGGTCTGCGATTCATACGGCTATTTGCTGGGATTTGAAAAGCACCCTATAAAGAATTGCCTTATTTGTTGTTTATAACATGATGTTCATTGCGCAGATTAGGTGACTTTTGGATGCTCGATACTGGTAAACTTCTATACTTTCTCAAGCATTTTAAGACCCCTTCCTTAATTTGTTTGGGCGTATAGTGGAGGTTCCCGTGATTACTAATAACCGTCATGTTGCCTCTTTCATATTCCAGACATATGGCAATGGTCAGAGTTAACCGGCTTTGGTGATCTACCATCACCTCGAGAGTTTGCTGCTGCTTCAGCCATAGGAAACAGAAAAATTGTTATGTAAGCATTCCATCTAATGCAAGTTTCCCTTTCATTTCTGGGTACCATCGCTTATGAGTTATGAAGAACATTTGGTTCATCCTGATTCAGGTATGGCGGTTGGGATGGCAAAAAATGGTTGTCGGATGTATACATCATGGACACAAGTAAGTTAACTTCCTGTTCTTATTCAATCAGGGTTGAGTATTTAATTTATTTTGTTCAGGATGGCAATAAAAAAATCAATCAATTAATAACTACACTCTCTATTGGACAGTGTCACTTGAGTGGACAGAATTATCAGTTACTGGATCAGTGCCACCTCCAAGATGCGGACATTCTGCCACAATGATCGAGAAGAGGTTGCTTGTATTTGGTGGCAGGGGTAACTTACATTTCTTGACTTGACTTGTATTTGCTGATGATTTTTAATTATTAATGAATCAATGCATAACTTTTGGCCATCAACATATATTTCTGATTATTTCATATATTTTTTTCAATAGGTGGAGCTGGGCCCATAATGGGTGATTTATGGGCTTTAAAGGGTGTCACTGAAGAAGGTACATCTTCCTAGTTGCTTGTAAATCTACTTATATTGAGAGGGAAGGAGGGTGGGATACTAACTGCTATTTAAAACTGGAAAACTCAACTATTTGCCTGGGAGGGAGGGGGAGAAGAAGAGGAGTGGCCGAATGGGGAGGTCTCAGGCCATCCTAACTGCTATTTACAACATCTGACACACAATAGTTGGTGGTTTAACCATTTGCCTCTCAATAGAAGCTTACTGTAGTTGATAATATGCCACTTAATAGATGTGCACACTCCATGTATTGCCCACTTTGACCAAATATTTTTGCATGTTTCTCCTGTTGCAATGGTGAGCCCACATTTATTTTTGTTTTAATAAACTTGCCTTTCTTAGTTGATGTTAGCTATTGTTAATTGGAAATGAAAAACCTGGTTATTGCCGACTACTGAGTGTGCTTACATTCTTATTCCTTCAATGAGATTACACAATTTTTTGATTGCCAGCACCTGATGTTTATTTTATTTTGGAAGATAACGAGACACCAGGTTGGACACAATTGAAGCTCCCAGGACAATCTCCATCTCCACGATGTGGTCACTCAGTAACATCTGGTGGACCTTATGTATGCAATTTGGTGTCCTTATATTTGCTTTCATACCATTTCTCTTTCTAGTTGCTTCGTATTTAATTGCTGATATCTCAATTGAGTATTACGTACTGCAAGTTCTCTCAGTTGATCGTTCTGTTATACTAGAATAGGTATCAGAAACTATTGCCCAGGAGTAGAAATGGAATGCTGGTTCACATTTAATACTTGTTGACACAGTACAAACAGCAAACTAGGGATGCTCAGTGTTTTGCCATCACACTATTCAATGTTGATGTTAAGTTTTCTGCTACAATGAATATAATGGTTTTTCAGTATATGACATACTGTAGTTGGTCATACCAAAATTTTTATTTTTTCAAAGCCCGCCTGTCTTATTCTTTACTTGGAGACTCCACAAAGTAATGCTTTTGTTCATACCAGGTAGCTTTGCAAATTTACGCTATCCATCAGTTCTATAGTCACAAAGTAATTCTTTTGTTCTTTACTGGGTAGCTTTAGCAAACTTACGCTATCCATCAGTTCTAGAGCTTATGTAATTGGAAGATGGGTTTCTTCTCCTGGAACTATCCATCAGTTCTAGACATTTTGTTGTCCAAACTTTTAATTCATTGCGCAATAGCATTACTAACAACCATATATCTTTTGGTTAGCTCTTGCTGTTTGGAGGACATGGAACTGGTGGTTGGCTAAGTAGGTATGATGTGTACTACAATGAATGTATTATTTTAGACAGGGGTAAGCACCAGCAAATTTTCTGATTTTTTTTTCATGTTGTTGTGAGCATGCATTGGGATCATTGATATGGAATTAGCATTACATTTTTCTTGATGTCAACACATGCACTTATTTTGACTGTCTTGTTGACACCCATCAGTTACATGGGCAAAATCCCTTATATCATGGGACGGGGGTAGTAGATGGTTTTCATAATCACAAAAGAGTGCAATCAGTGCATGCTGGTAACTAAAAAATAAGATGTGATTCCACAGTGATACAAAATCTACTTCTCATACTAAGACAGAGTAGCTTTGACAAAACATTCTTTGCAATATAACTGCAAACAAATCCCAACATTGATCAAGAAAACTGGAAAAGTAAGCGGGTTAATATGGTACTCTTGATCGTTACTACCCGAACAAGCATTAGGGAAGACAGCTAGCAGGTGGTTGGGGTATCGAGTTATCCTACTACTACCATGGTACTCAACCACATGCTTCATAGCCAGCTTGGGACTTGACACCCATAAGAGTAATTCTGTAACCTCAACAACTTACAGCAGCAATTATTATAGATACACTAACAGAAAGCATATGTGCTCTCCTCCTTAAGTCATGGCTACCTTACATGTCCTGCACTCTTTGAGGCATTCAGCGCACACATCATATGTCTGCTCTGCACCGCTGTGTGAAATTGTGATCACATGCATCCACTTCCCTGATCTTCATGTTCTAGAGTCCAGACAATCCCAAATATCATGTCTTACAGAGCATTCTGTTGCTTATGACCAGCGGATAGAACTTATATCTGTTAGGTTGTTAGCATACCACTTGGCCATCTAATTTAGTTTTGTACTTTTCTTCCATTTTTTTCTTCTCTTGTAGCAACCAGCAGTACTTATAGTTTTTCATCATCACCAACTATATTTGCTGACTAAAATTTGGCATCTCAGTCTCTGTTCAATGGAAGCTCTTAGCAACAAGTAATGAGCCACCCCCTCCTCGAGCATATCATTCTATGACTTGCATAGGGTCTCGATTTCTTTTATTTGGTGGCTTTGATGGGAAAAATACATTCGGGGATCTATGGTGGCTTGTTCCTGAAGGTATGGTCACTGTTCAACTGAAGAAGATTCTTTATTGATATAATGGAGTGCAGTTTTTATTCTTACAGCTTTACTCCATAATGCTTGATGGGAAAATATTTTTCTTCTTTCTGAAAACTCTACCTGATCGAATGCTCAGGTGATCCTATTGCGAAACGAGACTTGGTTCCTAATGTTGATTCAGACAGCAAACCTAGTAATGTGACTGGTGGTGCTCAACATTCCGCATCACAGGTATGTATTTTTGCGTGCTTGTGTGAGTAACGATTGACCTGTGGTTCAGAAGGTTTCCTGGAGAGTAAAAGTGAGAAACCAATCTGGAAACTTGAGATGATGATAAAAAAGGTATAGTTACTAAAAGATGCACTTATCGCAGGAATCACAAGCTGGGGAATCTCCAATGATTGACTTGGCAAAACGATTGGGCATTTCACTTTCTTTAGAAGCTTCAGCAAGTTTTGTTGACGAGATCAATGATAAAGAACTAATTGAATTATCATCTATGCTTTTTGGTGAATCACCCCCTACCGGTGACCAGCATGCATGCATTCAGGTGCTCATGTCTCAGCTATTCTGTAACCAGATCCAGTCGCATTGGTCTATGAAGAAATGTGATGTTTTTTTTTTGTGCATGGTACAGGCACTTCGTGATCATTGGACAAGTATTCCAGCCAACTCAATACAGCTCCAGGAGCTAGGCCCTTTACTGAGGGATTATCAACGCCTCATTCTTCGCCGCTATTTGTACGGTTCCCATTCTTGCGTTTTCCCTCTACTGTCTTTATTTACACTTTCTTAACCATCTGCGTTTATGTACATCATCCCTCTTCCAGAAAATGAATTATTATGTTTTGTCATGGTGATAAATCCGAGATGCTAGCATAATTTGTTTTGTTTTGCACAAGTAATAGTCACAAGCTGTACATTTGTACCCTTTATTGCCAATCTGTTATGCTCAGCGGTAACACATGAGCATGCATAGTAACCTGATGGCCATTATCAGGCTTAGAGTTTTTACAACTCACAAAATGACAACGGTTCTCTTTCTATTCATCAAATCAAGTCCTGAATTTAAGTGAAGAGTATTTGTTAGAAAAATTTTTAATTGATTATGATTTTACTAGTACTTCCTTCTTGCAACGGTTACAGGGAAAATTCATTCACGTCTTTCTATGAGAAGGAAGTTCACCGCTTCTTCCATTTGAAAAATGCTTCCGAGGTATGTATAGTGCATATATGATCATCTCCTATCAGTTAATGCATAGTTGCATAAGGAACTTTCTGCCATTTTCTCCTTAACACTGCCTTGTATCTCTGGTGTACTTCAGTTACGGATGGATGACATCCCCATCTTGTTGATGGAGTATGGAAAGCTGCTTTCCACCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA013889