Os12g0518200

From RiceWiki
Revision as of 10:32, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0518200| Description = Protein of unknown function DUF6, transmembrane domain containing protein| Version = NM_001073431.1 GI:115488823 Gene...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os12g0518200

Description

Protein of unknown function DUF6, transmembrane domain containing protein

Version

NM_001073431.1 GI:115488823 GeneID:4352357

Length

3060 bp

Definition

Oryza sativa Japonica Group Os12g0518200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:20282900..20285959

Sequence Coding Region

20283114..20283321,20283428..20283579,20283691..20283849,20283974..20284217,20284704..20284820
,20284954..20285019,20285715..20285890

Expression

GEO Profiles:Os12g0518200

Genome Context

<gbrowseImage1> name=NC_008405:20282900..20285959 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:20282900..20285959 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtgaaagcaagtatgaagccttattttgtcgccatcatcgttcaactgatctacactggcatgtttgtgatatccaaggctgctttcaaccacggaatgaacacctacatcttcatcttctatcgccaagcagttggctccctcatcttgctgcctgcagctcttctacaaaggaaaagtgcacgacaggtcatgacacttggggtgctcataaagctcttcttttgtgccttaatcgggattacgcttggggtaaatctgtaccatgtaagcctcaagttcacctctgcaacggtggcatctgcagtagacagctcactcccagccatcaccttcttcttggcagtgcttttgaggacggagtatgtgaagctgaggagctcttcaggcatagccaaggtcactagcgtagcactctgcctggctggagtcttcaccatcgccttcttcaccggcccatccataagccctatcaaccatcaccgtgccttcgcctctgacgcaggctctaaaaatgtagttccgaggggtgtgtggatcaaatggacattccttatggtgatcgccaacatgtgctggtctttgtggatcatttttcaggcagcggtgcaaaaggaatatccagataaaatgattgtgactttgactcaatgcttgttcagcacggtgcagtcgtttgtcgtcgccgtggtcgcagagcgcgacttctccaaatggaagctaagattcgacatcagcttgcttgccatcctatactcgggtgttatggtgacgggagtgtcctactacctgcaaacgtggtgcctagagatgagaggccccatgttcttcgcctcctggacgccactctgtttcgtgttcacaatattttgctcatccttctttcttggagagattgttcacctcggcagcatcttgggtggaattttgctggtcggaagtctttacaccatgctgtggggtaagagcaaagagggcaatgagactgacgatgtcaccgatgacgatattgagaaatctacacatatctaccccagagagcaacaacatactacaacagatcaggacaaagaatcgacgttgacagggtcggcagctttgcacgtccaagaactataa</cdnaseq>

Protein Sequence

<aaseq>MVKASMKPYFVAIIVQLIYTGMFVISKAAFNHGMNTYIFIFYRQ AVGSLILLPAALLQRKSARQVMTLGVLIKLFFCALIGITLGVNLYHVSLKFTSATVAS AVDSSLPAITFFLAVLLRTEYVKLRSSSGIAKVTSVALCLAGVFTIAFFTGPSISPIN HHRAFASDAGSKNVVPRGVWIKWTFLMVIANMCWSLWIIFQAAVQKEYPDKMIVTLTQ CLFSTVQSFVVAVVAERDFSKWKLRFDISLLAILYSGVMVTGVSYYLQTWCLEMRGPM FFASWTPLCFVFTIFCSSFFLGEIVHLGSILGGILLVGSLYTMLWGKSKEGNETDDVT DDDIEKSTHIYPREQQHTTTDQDKESTLTGSAALHVQEL</aaseq>

Gene Sequence

<dnaseqindica>2639..2846#2381..2532#2111..2269#1743..1986#1140..1256#941..1006#70..245#gggctctcgcacactgaagataatacactcccacaaacactacgcacgccttgctattcctgtatcgagatggtgaaagcaagtatgaagccttattttgtcgccatcatcgttcaactgatctacactggcatgtttgtgatatccaaggctgctttcaaccacggaatgaacacctacatcttcatcttctatcgccaagcagttggctccctcatcttgctgcctgcagctcttctacaaaggtattccctccgtccaatttaggctatgtttatattcaaggtgaaaagttttgacgtgtcacatcggatatacggacacatatttgaagtattaaacgtagactaataacaaaacaaattacagatttcgcttgtaaactgtgtaagcctaattaatccgtcattacaaatatttacttagcaccacattgtcaaattatagagcaattaggcttaaaagattcgtctcgcaatttacacgcaatctatataattagttattttattcatttatatttaatactccatgcatgtgtccaaacattcaatgtgacagggtgaaaaattttgccaggtgatctaaacaggcccttaagtgcaaccatgattttctgtgcacaactttgatcgtccgtcttatttatttttttttaaaaaaaactaaaaacataagtcatgtataaagtactattcatgttttatcatatcataacactaaaaatactaattataaaaatttttaaataaaacgaacgaccaaaattgggcaccatggagcacaaaataaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcgccacttcgtttagtttgctatattgtttgatttgctgagaaatagaagtccgtttgattatatttgtaggaaaagtgcacgacaggtcatgacacttggggtgctcataaagctcttcttttgtgccttaatcgggtatgcactcatctttgcaatctctaatttattgatacaaaaacaaaacaaaaaaaacgatcgattgtatactcatgatatgtcaagagtttaattagtctctgctggtttacctgcggaaattgcttttcaggattacgcttggggtaaatctgtaccatgtaagcctcaagttcacctctgcaacggtggcatctgcagtagacagctcactcccagccatcaccttcttcttggcagtgcttttgaggtttatcatcatcgatatcatagtccaccacctcttaagagcaagtttaatagtagagctcactacttactattagtcattgtgaaagctaacatgtataataggttaactataaggttatctttatttttttcatccggtctttttctctcctatgaatttaatgcatgtttcttggagcttgtgtgcagttagctcttacatgagagccaacactccccacttttgtttatccttctcttccacataagcatatagcttgcttatagctcactattatttttgctctaaacgagacatcattaaagcctaacttgagaatgtaccataaatagattcaagttagttgtgaaaacattaattataagatgttttgacattaatcataaattttgatatacatatttagatatacactatatcgacacacataatttgaatggatggagtagtatataataccaggattgaaatgttgcttgccaggacggagtatgtgaagctgaggagctcttcaggcatagccaaggtcactagcgtagcactctgcctggctggagtcttcaccatcgccttcttcaccggcccatccataagccctatcaaccatcaccgtgccttcgcctctgacgcaggctctaaaaatgtagttccgaggggtgtgtggatcaaatggacattccttatggtgatcgccaacatgtgctggtctttgtggatcatttttcaggttcgcatgcatatttagttatttaaaaaaaatctgagctgttcttgcatgcttgtctgcatcgatccacatctgcaattgctgatgaatcgaggtctccactccttgtctattgactgtgcaggcagcggtgcaaaaggaatatccagataaaatgattgtgactttgactcaatgcttgttcagcacggtgcagtcgtttgtcgtcgccgtggtcgcagagcgcgacttctccaaatggaagctaagattcgacatcagcttgcttgccatcctatactcggtaagttctgtacataaaattttcagtcatcctcttccactagcgtattcactattggcatggtcttctgcacacgcatctgactattagacgactggtggtttgcttcagggtgttatggtgacgggagtgtcctactacctgcaaacgtggtgcctagagatgagaggccccatgttcttcgcctcctggacgccactctgtttcgtgttcacaatattttgctcatccttctttcttggagagattgttcacctcggcaggtaagttaaatcatatgtacttgctgtcaactgatcaaaggtgcaatattctaaaaacactctgaaataaacaaactttcattttccgctcttcctttattggcagcatcttgggtggaattttgctggtcggaagtctttacaccatgctgtggggtaagagcaaagagggcaatgagactgacgatgtcaccgatgacgatattgagaaatctacacatatctaccccagagagcaacaacatactacaacagatcaggacaaagaatcgacgttgacagggtcggcagctttgcacgtccaagaactataattttttttggcatggcagcccttttatttagtcaccttaaattaggtgacatcggcctatttgaatttggctcatgtgttactgtgttatgagatcgtggaattaattccaccttagttgttatgggcgggttagagtaatctattgtaacaccctaaaaatttcgagtttgaaatacggaaacaaaattcggaataaccaaaaatctttttct</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0518200, RefSeq:Os12g0518200