BGIOSGA005774

From RiceWiki
Revision as of 02:28, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA005774| Description = cDNA clone:001-017-G06, full insert sequencecDNA| Definition = Oryza sativa Indica Group BGIOSGA005774, complete gene....")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA005774

Description

cDNA clone:001-017-G06, full insert sequencecDNA

Definition

Oryza sativa Indica Group BGIOSGA005774, complete gene.

LocusTag

'

Ensembl Transcript ID

BGIOSGA005774-TA

Ensembl Protein ID

BGIOSGA005774-PA

Length

2229

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:30937277..30939505

Sequence Coding Region

30939376..30939505,30939208..30939236,30938686..30938751,30938231..30938338,30938084..30938149
,30937613..30937733,30937424..30937505,30937277..30937319

Genome Context

<gbrowseImage1> name=IndicaChromosome02:30937277..30939505 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:30937277..30939505 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGCTGGAGAAGCTGATGGAAAAGCCCCACTGGGATCAAGATACCCCCCTGCTGCTCTCAACGAGCGCATCCTTTCTTCCATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGGTCCAGGAGCTCCAGCAGTTTTCAACTGCGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAACTGGCCTAATTAAGGTTGATCGTGTTCTTTACTCATCTGTTGTTTACCCACACAACTATGGTTTCATTCCACGCACACTCTGTGAGGACGGTGACCCCATGGACGTCCTTGTCCTGATGCAGGAACAAGTTGTCCCTGGATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACCGCCACTTCAGGGACATCAAGGAAATCCCCCCTCACCGCCTTCAAGAGATCCGCCGCTTCTTTGAAGACTACAAGAAGAATGAGAACAAAGAAGTTGCTGTCAATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGA</cdnaseq>

Protein Sequence

<aaseq>MAGEADGKAPLGSRYPPAALNERILSSMSQKHVAAHPWHDLEIGPGAPAVFNCVVEIPRGSKVKYELDKATGLIKVDRVLYSSVVYPHNYGFIPRTLCEDGDPMDVLVLMQEQVVPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPHRLQEIRRFFEDYKKNENKEVAVNEFLPAEDAINAIKYSMDLYGAYIIESLRK</aaseq>

Gene Sequence

<dnaseqindica>1..130#270..298#755..820#1168..1275#1357..1422#1773..1893#2001..2082#2187..2229#ATGGCTGGAGAAGCTGATGGAAAAGCCCCACTGGGATCAAGATACCCCCCTGCTGCTCTCAACGAGCGCATCCTTTCTTCCATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGGTACCTTGCAATGTTTCACTCAGAATATATTTTTTTCTGTTCAGTCTTTTCCTTGCTTATGCTTGAATTATTCTGTGCTCTGAATGATTTCTTGTTCCAAATTTGTCTTATTGGATGCCTATTGTCCTCTTAAATGCAGGTCCAGGAGCTCCAGCAGTTTTCAACTGCGTAAGTTTACCTTTACTACTAAATCTCTAAATATGATTTGTGTCATTTTATGGGTTGAATGTCAATCTGGCTCTTTACCTTCATAGTTGGAATCTCTCATGGTGTCATAGGAACCGAACTGTCTGAACTGACCGCCTGGTCCTTAGGCTTTTGGAATCATCAACCTAAACTTCACTTTATATAGTACTATGTATATTGTATTGTTGTGGGGTCAAATGCTTGCTCCTATTGAAACATGCTGGGACAATGTTGACTGTTGAGTAATGACCGTGTGTTTCCTATTTCTGGTGCACATTTGCTTAAACATGTATCAAGCTGCTGCACTCGATTATATCCACAAATCAATTGTTACTCAATGATCGTGCAGACCACTTTCTTGTAGTATGCCTGGTCTTTAGCTGGATTGTGGGGTATTGCTAAGTTCTATGCTATGAAACTGCATGATTTTTTTGTCAGGTGGTTGAAATTCCTAGAGGCAGCAAGGTTAAGTATGAGTTGGATAAGGCAACTGGCCTAATTAAGGTAAAGCTCATACTAATTTTACTCAAGCAAATGCATATATTTCTTACATGTACCAGCTACATGTTAATCTTTGGTCTTTATGAGCACTGAGCATATTCTCCCAATTTGAAATAAGCACTGAATCCATATCTTGTCTCAAAATGTAAGAGGAGATCAAATGGCACTATCAATTAGCACTTCATGGTACAAAAATCATGCTTCTTCTGATCAGAACTTTAAAATGGCAAACATTATGACTGCCATTAACAGTAGGATGGTTAGTGACAGGGATAATGCGAGGGGCTGCAATAAACGACTTATTTTCAACATTGACAAAAGAGAACTTGAAAATTTTACCTGTGTTTCAGGTTGATCGTGTTCTTTACTCATCTGTTGTTTACCCACACAACTATGGTTTCATTCCACGCACACTCTGTGAGGACGGTGACCCCATGGACGTCCTTGTCCTGATGCAGGTAACTGATGGATGTGTGTGTGTTTTTTAAAAGAAAATATACAAACCTTCTCTAACATTGCTTCTTTTTCTCTCCTGATAGGAACAAGTTGTCCCTGGATGTTTCCTGCGAGCTCGTGCTATTGGGCTCATGCCTATGATTGATCAGGTTAAATCCCATCATGTCCTTGCTTTTTTTTTAGAGAGGGGAAATTCCTCCATCCTTGGTTACATGGAAGTTGCTTTTGTTAGATAAGGTTTCCATGCTTTATTGCTTGGTGCATGAAATTTCTCTAAGCCAACAAATGAAACAAAAACAACAGTACCCTTGATCCATCATCCATGTGATTTTACTCTCTGGACAAAAGAAAGAAAAACAGTAGTATGAGTTGATTGATAGATGAGATTTCACCTAGACTAGTCAGTAGCCCAACACAAGAAAGAAATAATGGTATTTTGTACCAAGTGATTATGATCTAATGGCTTGAGTTCTTACACATGATCATTTGATGCAAACAGGGTGAGAAAGATGACAAGATCATAGCTGTTTGTGCTGATGACCCTGAATACCGCCACTTCAGGGACATCAAGGAAATCCCCCCTCACCGCCTTCAAGAGATCCGCCGCTTCTTTGAAGACTGTATATTCTTATTCTATATCCATGTCTTCCTTTTTCCAAATGTTATAATGTAGATAGTTGACGGCAGATACTAGAACCGTATAATTAAACTTCTGTGGTGTTGACAGACAAGAAGAATGAGAACAAAGAAGTTGCTGTCAATGAGTTTCTCCCAGCAGAAGATGCCATCAACGCAATCAAGTACTCAATGTGAGTTTTGCTTGTTAATTCTTCAGCAAAACCTGATGTTCATTCTTTATCCTGTCGTCTTCACAATCAATCCACTGACTAAACCATCAATTGTTACACCACAGGGACCTCTACGGCGCCTACATCATTGAGAGCTTGAGGAAGTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA005774