BGIOSGA005788

From RiceWiki
Revision as of 02:28, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA005788| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA005788, complete gene.| tag = AOX1C| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA005788

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA005788, complete gene.

LocusTag

AOX1C

Ensembl Transcript ID

BGIOSGA005788-TA

Ensembl Protein ID

BGIOSGA005788-PA

Length

1344

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:30665548..30666891

Sequence Coding Region

30666532..30666891,30666277..30666405,30665698..30666186,30665548..30665607

Genome Context

<gbrowseImage1> name=IndicaChromosome02:30665548..30666891 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:30665548..30666891 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGGCTCCCGCGCTGCTGGATCAGTCCTCCTCCGCCACCTCTGCCCCCGAGTCTCCAGCTCGACCTCTGCGGCTGCGCATGCGCATGCGCAGCGGCCTCCGTTAGCCGGCGCCGGCGGAGGGGGCGTGGCCTTGTGGGCGCGACTTCTATCCACCTCCGCCGCCGCCGCGAAGGAGGAGACGGCCGCGTCCAAGGAGAACACCGGGAGCACCGCCGCCGCGAAGGCGGAGGCGACGAAGGCCGCCAAGGAAGGGCCGGCCAGTGCGACTGCGAGTCCCGTGGCGAGCAGCTACTGGGGCATCGAGGCGTCGAAGCTCGCGAGCAAGGACGGCGTCGAGTGGAAGTGGTCTTGCTTCAGACCATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCACGAGCCGAAGGTGCTGCTCGACAAGGTCGCCTACTGGACCGTCAAGGCGCTGCGCGTGCCCACTGACATCTTCTTCCAGAGGAGGTACGGGTGCCGCGCGATGATGCTGGAGACGGTGGCGGCGGTGCCGGGGATGGTGGGCGGCATGCTGCTGCACCTCCGGTCGCTCCGCCGCTTCGAGCACAGCGGCGGCTGGATCCGCGCGCTGCTGGAGGAGGCCGAGAACGAGCGGATGCACCTCATGACCTTCATGGAGGTGGCCAAGCCGAGGTGGTACGAGCGCGCGCTCGTGCTCGCCGTCCAGGGCGTCTTCTTCAACGCCTACTTCCTCGGCTACCTCCTGTCCCCCAAGCTCGCGCACCGCGTCGTCGGCTACCTCGAGGAGGAGGCCATCCACTCCTACACCGAGTACCTCAAGGACATCGAGGCCGGCAAGATCGAGAACGTCCCCGCGCCGCCGATCGCCATCGACTACTGGCGCCTCCCCGCCGGCGCCACGCTCAAGGACGTCGTCGTCGTCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATTATCACTGA</cdnaseq>

Protein Sequence

<aaseq>MGSRAAGSVLLRHLCPRVSSSTSAAAHAHAQRPPLAGAGGGGVALWARLLSTSAAAAKEETAASKENTGSTAAAKAEATKAAKEGPASATASPVASSYWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMHLMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLKDIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLKDIPAPLDYH</aaseq>

Gene Sequence

<dnaseqindica>1..360#487..615#706..1194#1285..1344#ATGGGCTCCCGCGCTGCTGGATCAGTCCTCCTCCGCCACCTCTGCCCCCGAGTCTCCAGCTCGACCTCTGCGGCTGCGCATGCGCATGCGCAGCGGCCTCCGTTAGCCGGCGCCGGCGGAGGGGGCGTGGCCTTGTGGGCGCGACTTCTATCCACCTCCGCCGCCGCCGCGAAGGAGGAGACGGCCGCGTCCAAGGAGAACACCGGGAGCACCGCCGCCGCGAAGGCGGAGGCGACGAAGGCCGCCAAGGAAGGGCCGGCCAGTGCGACTGCGAGTCCCGTGGCGAGCAGCTACTGGGGCATCGAGGCGTCGAAGCTCGCGAGCAAGGACGGCGTCGAGTGGAAGTGGTCTTGCTTCAGAGTAAGAATCGATTTATCCATGATCCTGCTTAAAGATCGCTTCCTCTCTTTTTTGCTGTTAATTTAACTAATCTGAATTCAATTTGTGTAACTGCGTCGATGAATTAATGTGTTTGCTAATTTGCAGCCATGGGAGACGTACTCGCCGGACACGACGATCGACCTGAAGAAGCACCACGAGCCGAAGGTGCTGCTCGACAAGGTCGCCTACTGGACCGTCAAGGCGCTGCGCGTGCCCACTGACATCTTCTTCCAGGTAACCAACCACAACTAATTTTCCATCAAAGATCATGCCAATCTATTTTGCTGATCGAAATGGATGGGAATCAATGGAACGATTTTGCAGAGGAGGTACGGGTGCCGCGCGATGATGCTGGAGACGGTGGCGGCGGTGCCGGGGATGGTGGGCGGCATGCTGCTGCACCTCCGGTCGCTCCGCCGCTTCGAGCACAGCGGCGGCTGGATCCGCGCGCTGCTGGAGGAGGCCGAGAACGAGCGGATGCACCTCATGACCTTCATGGAGGTGGCCAAGCCGAGGTGGTACGAGCGCGCGCTCGTGCTCGCCGTCCAGGGCGTCTTCTTCAACGCCTACTTCCTCGGCTACCTCCTGTCCCCCAAGCTCGCGCACCGCGTCGTCGGCTACCTCGAGGAGGAGGCCATCCACTCCTACACCGAGTACCTCAAGGACATCGAGGCCGGCAAGATCGAGAACGTCCCCGCGCCGCCGATCGCCATCGACTACTGGCGCCTCCCCGCCGGCGCCACGCTCAAGGACGTCGTCGTCGTCGTCCGCGCCGACGAGGCACACCACCGCGACGTCAACCACTTCGCGTCGGTACGTGCGTGTGAATTCCTAAGTTTGCTGTGGGCTTTGTGTACGGCTTGTGATGACTGGATTGTTCTTTTGCTTGTGATGTGCATGCAGGATGTTCATTTTCAGGGGATGGATCTCAAGGATATCCCTGCCCCGCTCGATTATCACTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA005788