BGIOSGA005937

From RiceWiki
Revision as of 02:30, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA005937| Description = Aldehyde dehydrogenase| Definition = Oryza sativa Indica Group BGIOSGA005937, complete gene.| tag = OsI_08277| tid =...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

BGIOSGA005937

Description

Aldehyde dehydrogenase

Definition

Oryza sativa Indica Group BGIOSGA005937, complete gene.

LocusTag

OsI_08277

Ensembl Transcript ID

BGIOSGA005937-TA

Ensembl Protein ID

BGIOSGA005937-PA

Length

6706

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:27853758..27860463

Sequence Coding Region

27860257..27860463,27860073..27860141,27859392..27859488,27857381..27857587,27857156..27857280
,27856942..27857046,27856536..27856696,27856358..27856448,27856116..27856265
,27854620..27854730,27853758..27854009

Genome Context

<gbrowseImage1> name=IndicaChromosome02:27853758..27860463 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:27853758..27860463 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGAGGAGAAGCCGCAGCACGGCAGCTTGGGCGGCTTGGTGGCCGGCGTGAGGGAGGAGTACGAGAGCGGGAGGACCAAGGAGCTGGAGTGGAGGAAGGCGCAGCTCGGGGGCCTCATCAGGATGATCACGGAGGAGGAGGACGCCATCTTCGACGCGCTCCACGACGACCTCGGCAAGCACCGCGTCGAGTCCTTCCGAGACGAGCTTGGGGTTCTTGCCAAGTCCGTCAGGAACACGCTGCAAAACCTCAAGAAATGGGCTTCGCCCGAGAAGGTTGATGTGCCGCTTATTTCATTTCCATGCAACGCTCGGGTCGTGCCGGAACCAATCGGGGTTGTGCTCATTTTCTCATGCTGGAATCTCCCAATAGGCTTAGCTCTAGAGCCACTCTCCGGGGCCATAGCGGCCGGCAACGCCGTTGTTCTGAAGCCCTCCGAGTTTGCACCGTCAACCGCCGCGTTCCTCGCCGCCAACATACCGAAGTATCTGGACGCCAAGGCCGTGAAGGTCGTACAGGGCGGGGCGGAGATAGGAGAGGAGCTCATGGAGCACAGATGGGACAAGGTCCTTTTCACCGGGAATGCTCGTGTAGGGCGCATCATTATGACGAAAGCAGCGAAACACCTGACGCCGGTCGCGCTTGAGCTTGGCTCGAAATGCCCGTGCATCGTTGACTGCCTTGACAGTAAGAGGGAGTGTCAGGTCGCCGTGAATCGGATAATCGGAGCGAAATGGTCTACTTGTGCAGGACAAGCTTGCGTTGCCATCGATTACATACTTGTCGAGGAACAGTTTGCACCATTCCTGATTGAACTGCTTAAATCTACACTCAAGAGGTTCTTTACCGAACCAGAGTACATGGCGCGCATCCTGAACGAGAAGCATTTCCATAGGTTGACAAACCTTCTAGAGGATGATCAAGTGAAATCCTCCATTGTGCACGGCGGCAACGCTGACCCCAAGACACTGTGGATCGAGCCCACCATCGTGCTGAATCCACCGCTCGACTCCGACATCATGATGGAGGAGATATTCGGGCCTCTGCTCCCAATCATAACGGTAAAGAAGACAGAGGATTGCATCGCGTTCTTGAAATCGAAGCCCAAACCGCTTGCCATCTACGCCTTCACCAACAACGAGAAGTTAAAACAGCGGATCGTCGCAGAAACGTCCTCCGGGAGCGTCTTGTTCAACGACGCGATTGTGCAGCGGCGTGCGCACGACGCGCCCTCTGGAAGGAAGGAGGCGGTTGGCTCAGCTAGGCCACGGTCTGGCTGGGCCGTGTTAGGGAGAAAAGACCGGAAGGACCCAAATAGTAAGTACGGGCTGGACAGCGTCCCGTTCGGCGGGATCGGGGAGAGCGGGTTCGGGCAGTACCACGGCAAGTACACGTTCGAGCTGTTCAGCCACAGGAAGGCGGTGGTCAGGAGGAGCCTCCTGGTCGAGTTCATGTTCAGATACCCGCCTTGGGACGAGTACAAGATGGGGATGTTGCGCCGCGTCTTCAGGTTCGACTACGTCTCGCTCGTGCTTGCGCTGCTCGCCTTTTGGCTGCTCGGCATAAGGCGATGA</cdnaseq>

Protein Sequence

<aaseq>MEEKPQHGSLGGLVAGVREEYESGRTKELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVESFRDELGVLAKSVRNTLQNLKKWASPEKVDVPLISFPCNARVVPEPIGVVLIFSCWNLPIGLALEPLSGAIAAGNAVVLKPSEFAPSTAAFLAANIPKYLDAKAVKVVQGGAEIGEELMEHRWDKVLFTGNARVGRIIMTKAAKHLTPVALELGSKCPCIVDCLDSKRECQVAVNRIIGAKWSTCAGQACVAIDYILVEEQFAPFLIELLKSTLKRFFTEPEYMARILNEKHFHRLTNLLEDDQVKSSIVHGGNADPKTLWIEPTIVLNPPLDSDIMMEEIFGPLLPIITVKKTEDCIAFLKSKPKPLAIYAFTNNEKLKQRIVAETSSGSVLFNDAIVQRRAHDAPSGRKEAVGSARPRSGWAVLGRKDRKDPNSKYGLDSVPFGGIGESGFGQYHGKYTFELFSHRKAVVRRSLLVEFMFRYPPWDEYKMGMLRRVFRFDYVSLVLALLAFWLLGIRR</aaseq>

Gene Sequence

<dnaseqindica>1..207#323..391#976..1072#2877..3083#3184..3308#3418..3522#3768..3928#4016..4106#4199..4348#5734..5844#6455..6706#ATGGAGGAGAAGCCGCAGCACGGCAGCTTGGGCGGCTTGGTGGCCGGCGTGAGGGAGGAGTACGAGAGCGGGAGGACCAAGGAGCTGGAGTGGAGGAAGGCGCAGCTCGGGGGCCTCATCAGGATGATCACGGAGGAGGAGGACGCCATCTTCGACGCGCTCCACGACGACCTCGGCAAGCACCGCGTCGAGTCCTTCCGAGACGAGGTGACCTCGATCGCTCGCCGTGGCAACTGACAAACGCTTGTTAAATTAGCTGATGATCTCTGTTCATTCGGTTTATGCTCTGGTTTATGTATATTAATTAATTGCTCGTCCACAGCTTGGGGTTCTTGCCAAGTCCGTCAGGAACACGCTGCAAAACCTCAAGAAATGGGCTTCGCCCGAGAAGGCAAGAACTGCACCTACTTAAATCCTGCACCGTGTGTTAGGGCCTTTTCGCTTATGCTCATGTTTATCAGTCAAAATTTGAATTTTTAAGTTTAAATTTGGAGCTGATTTTGAGGTTTTTCATCGAAGCTTATTTTTCAGCCTTTGTTTTCATATCGCTAAGAACACGTATATAAAAATTTTATTTACAAATTACTTTTTATTTCCAAATATGCCGTTTCGCTTATTCCGCGAATAAGCAAAACGATGGCTCCGTTAAAATATGCGGCAGTCAAAATTTTAAAACTTTAAACAGAAAATAAGTAAAGATAGTAATCCCTCAATTTACTTTTGATAGTTATATAGAGGGAGTAATTAGTATCGACCATTACTAGCTAGATTTATAATGCTGTAATTTAATGTTCTTTCATGAATATGTACTTTGAAAAATGATAGTCAAGCAAGCATATTCCTTATGGCAAGAAAACGGAGAAGAGATGTATAGTCTCCAGCAGGTGCAACATAAGCTTCTGCAAAATTAAGGCCGGCACATTAATTCATTTGTTACGTACTCTGACTGGATAGTTGGGGGTTTTGTGGGTGCAGGTTGATGTGCCGCTTATTTCATTTCCATGCAACGCTCGGGTCGTGCCGGAACCAATCGGGGTTGTGCTCATTTTCTCATGCTGGAATCTCCCAATAGGTGAACTCACCATTTTGCTCCATTCATCATGGTCGGCTTGGCTGTTTTTCATAAAGGAAGTCTATTAGTTGCAGAGCAAATCATTTTTTCCTGATCCATATACCAGACTCTTTTTCTTGACAATGAAAATATAACTTCAATTGATCTCCACACCAACTGAAGAGGCACACAAACGCACAGTTAATATTTGAATCATATCGAATCAAGTAATGCATCTATGACTTCACCACCGCACCAAATTAATTTTAAACAGGATTTTCCGGTGAAGAGTGATTTAATATGGTGTGACAACTTCTACATATCGGTATCTAATTAACGGTGAGACAGCGATAGAGATGCGACGTACTCCCTCCGCTTCATAATATAAGTTTATTTAATTTTTTTCTTAGTCAAACTTTTTAAGTACATTCAAGCAGATTTATAGAAAAGTTTAGAAATATTTGTAACACAAAATCAGTTTTATTAAAATAACATTGAACATATTTTGATTATATGTTTTTATGTTGAAAATGTTACTATATTTTTCTATAAATTTAATCACACTTAACAAAATTTGACTTGAGAAAATCAAAACGTCTTATAATATAAAACGAACAGAGTATTTTTGTCCTCTTTGTCTAAAAGACCTTTCCTTTTAACCATATAAGTACATAACCCAAAAACATCTTAAGAAGAATAGCATGGATCGCAATTTGTTACAGTTTTGAAGTTCACAATGGAAACTTAACTTTAAAAAGGTTACTCGATCGAGGACCGTGATCTTCTTTTCTCGATTACGAAAATAAAACGGCCCACATGCTTAATAATTGCCTTCAGAGACGAGACCTGTGTGTTATTAGATCGTAATCGTGAGTTAGTCTCATAGCTGCCCGATGGTAACATATATATTAATTTTCGATCGTCTTATGCAATGAAGCCTTGCAAGTTAATGCAGCAAGTTCCATCGGTCTCACGCTGGTTGGTTGCTGAATTGATCACGTCCGTCACTGCAGAGATCATGAACATACTCATTATATTGCCTTAACCTTTTGAGCGCCAATACATCCAAAAATGCATTCCTACGTACAGTTGTCAGCATCAGAGTACTGTCCATCTTCCTCTATGAACTTAAGCTTTTAGGTTAACCTAACTTGTGCGTGCAACTCAATAGAAAGAAATGCACCAATTTATAACACCATGTTCATGGACTGGTCAATCAAATGAAAAGATATATATGCCATATTTAAGGAATTCTAGCGGTCGTAGTTTCTCTCAGTATGTCTAACTTTAGTAAACAGTATAGATTCTTATAATCTATAGTTATAGTATCAAGTCAAAAGTTGGCTACCAACCAACTGTTTCTTGAGAATCTTAGGGCCTGTTTGGGGGAGCTTCTGGCTGCCGCAGCTTCTCCCAGAATCTTCAGTACCCCCAAATAGTACAGATTGTCACCCAGATTCTCAGAATCTGTAGTTGTGGATTCTAGAAAATAAACTAGTACCCAGAAACTAGAAAACTCAGCTTCTCCAGATTCTTAGAAGCTGGCTACCAACCAGCAAATCTCGGAATCTTAAGCTCCCAAATAAGAGGAGAAAATTACAATATTGGGACTGCAAACATTGGGGCTTCGCTGATTTGACACTCCGAGTAGATGACAAATGGGCCTATATGTTCCAAATAAGACGATAGGGTGAACTTCAGATTATCTCGGCACCATGTCCATGACCATAATTCACATAACCAAACACTCTTGTCAATTGCGTGGTAGTTTGCATGGTCAGTGGCTCAGTGCTCACCGTTTTCATGGCATGCCGTACGTCCACAGGCTTAGCTCTAGAGCCACTCTCCGGGGCCATAGCGGCCGGCAACGCCGTTGTTCTGAAGCCCTCCGAGTTTGCACCGTCAACCGCCGCGTTCCTCGCCGCCAACATACCGAAGTATCTGGACGCCAAGGCCGTGAAGGTCGTACAGGGCGGGGCGGAGATAGGAGAGGAGCTCATGGAGCACAGATGGGACAAGGTCCTTTTCACCGGTAAATGCATGACGTACACTGTGCCAAACTCAACTTGGTTCTGAAACTTCAATTCGTCGTTATTGACTGTATTTATTATGATGGTCATTTTGTTTTTCAGGGAATGCTCGTGTAGGGCGCATCATTATGACGAAAGCAGCGAAACACCTGACGCCGGTCGCGCTTGAGCTTGGCTCGAAATGCCCGTGCATCGTTGACTGCCTTGACAGTAAGAGGGAGTGTCAGGTATAGCGTTCGATCTGTTCTTCACCAGTTTTCAGTTCTGAGATACAATGCCTGGTTGGAAGGTGGAAGGGCAAGAGTGAGCTTATCTGATGATGCCTTGGTCGCACAGGTCGCCGTGAATCGGATAATCGGAGCGAAATGGTCTACTTGTGCAGGACAAGCTTGCGTTGCCATCGATTACATACTTGTCGAGGAACAGTTTGCACCATTCCTGGTCTGGTTTCACTCTGAAATCTTCGTTTGATTCTGGTGCCATTTCGCCAGATGAGTTTTGTACCACATTTCTAACTAGAGAAATTTTATAGACCTTGAGAATTTGGTAGCTCAAACTATTTAGTACTTACAAGTACCAAATTTTACATTAGAAAATGTGGTACCTTCTCGTACGTTATCAAGGATATATAGTAAATTATCCTTCTAACAAATGTCCTTTCTGGTGTATGTGTCATATCTCTGAAGATTGAACTGCTTAAATCTACACTCAAGAGGTTCTTTACCGAACCAGAGTACATGGCGCGCATCCTGAACGAGAAGCATTTCCATAGGTTGACAAACCTTCTAGAGGATGATCAAGTGAAATCCTCCATTGTGCACGGCGGCAACGCTGACCCCAAGACACTGTAAATTATTAACTCCAACCTTTTGCATTCCTAGCCAATCGTATACACGGAATTTCGGTGTATCATGCCGTGATTCTAACTGTGCAGGTGGATCGAGCCCACCATCGTGCTGAATCCACCGCTCGACTCCGACATCATGATGGAGGAGATATTCGGGCCTCTGCTCCCAATCATAACGGTACGAGTCGACAAAGATAGCGGCAATTCTTGATTGAACCAAGCACAACACACGCATCTGGCGGAAACAACAAACGCCGCTCTTGTTTGCAGGTAAAGAAGACAGAGGATTGCATCGCGTTCTTGAAATCGAAGCCCAAACCGCTTGCCATCTACGCCTTCACCAACAACGAGAAGTTAAAACAGCGGATCGTCGCAGAAACGTCCTCCGGGAGCGTCTTGTTCAACGACGCGATTGTGCAGGTAAAAGAACACAACGAGACGAGATGCGCACTCATGCTTCGTTAGAGATAAAATCTTTCACAGTGTCCTGAAGTAAAATCTAAAGAGTTAATTTCATAAAACAACATATATTTTAGCCAAATCTGTTAACTTATTAAAATAATAAAAAAGCCTCCATGGTAAGTCTCACAACCTATAAATTCAAAATAGAGTCCATATAGAAATACAATTTAAAAAATAGCTGAAATTCAGAATTAAAATAAGGAATAGTGAAGAGTAGACTAGAGTCCATACCGGTATATAATTTAGAATTAACAGAAATTCGAAATTAAAAAATAAGAAAATTTAAAGTAGATATTAGAGTCCATATAGAAATAAAATTATAAATTTTAAAAAATAATAAATATTGGAAGAAGCGTCTATATGAAGTTCAAATAGAAATACAATTTAGAAATAACTAAAATTAAAAATAAAAATAAGGAATATTAAAAGATAAGTTTAGATTCCATATGAAAATACAATTTATAAATAATAAGGAAGATTGGAAGAAGAATCTAGAGTCCATATAGGAATTTAGAATTAATTAAAAATTGGAATAAAAAATAATAAGTTTAAAAGTAGAATTTAGAGTCCATATATAAATACAATTTACAAATAACTAAAATTCCAAATTAAGAAAATGAATATTAGAAGAAGTGTCTAGAGTCCATATAGGAATACAATTTACAAATAACTGAAATTTGAAATTAAAAAAATAAAGAATAATGAAAGATGAGTTTACAGTTCATATAAAAATACAATTAGAAATATTAAAAATTAAAATAAGGAATATTGGAAGAGGAGTTTAGTCCATATAGGAGTACAATTTAAAAATGACTAGAATTTGGAATTTAAAAATATGAAATCTTAACTACTTAAAAAATTATATCTTTCTGATCGTCACGTGCGATTTTTGGTTCATCGTCCGAGTTTGCACACGATCGGACAAAGCAATGGCGACGTCTGCATGCCCGGCTATGTCTATTCCTCTTATTTTTCCTCGGTTTAGGGCTTCAAGCCAAGCAGGCAGAGGAAGAGAGGGCGTACGACGTCGGCGCGTCCAGTGGCTTAACGGTGGCGCCTCAACGCAATCCCAAACACAACACGATGGAGGAATGCGGCAACCGGCATGGGGAGCGAGGGAAGAGTTGGGAATGCCGATGACAAGAACTTAGTCCGGCAGGAGAGAGAAAACTCTGAGGCTTGATGTGAGGTGGGAGAGGAGGAAATGGGGAAAATGGATTCGCCGGAGTGGGCAAATGCTAGTGGTGAGATGGTACGGCGAGATACGCTATAGGGGAGGCGGAGATCACTCCGGTAGGGCAGTGGCGGCTGTTAACGACCAAATTTGTTTTTTGCATCAACAGCGGCGTGCGCACGACGCGCCCTCTGGAAGGAAGGAGGCGGTTGGCTCAGCTAGGCCACGGTCTGGCTGGGCCGTGTTAGGGAGAAAAGACCGGAAGGACCCAAATAGTAAGGTGATGGAATTAGCCCAGGAGGGAGATGACCGGTTGGAAGGATTTCGGTCCAAAAGAAATGGAAGAGTTTTCTGAATTTTTGAAGGGGATTATTTTAATAGAATCTAAAAAGAGATGTAGTTAAAACGAAGGAGATGTAATTCAAAAGAATTTGTTTGGAGACTATTTTGGGATTTGGAGATAAATTTTAACATATAGTTCATGGAATCTATGCATATGGGAATGGAAGTTTAAAGGGACTTTTATTTTGGGGTATTGGGTTAAAGGAGGGGTATTTGAATAAAATACATGTAGTTCATAGACTCTATGCATGTGGGAGTTTTGGTTTATTTTTGGAAATGGAAGTTTAAAGTGACTTTTATTTTGGGTATTGGTTCAAAGGAGGAGTATTGGAATAAAGGAATAGATATTTGAAATTGGAGAAGAGTTTTTGATAGGAATACTTTAAGTACATAATTTCATATGGGTGCTATCCGTCTATCCGTGCAATTGCAGAGGGCCATCCAGCTAATTTAAAGTATATATAGTTTTGTAAAATTTACTCAAAACTTAAAAAAAAAAAGTGATGCCCTTTTTTTTTCTGATATGTCGCTGCAATCTGTGCATGCAGTACGGGCTGGACAGCGTCCCGTTCGGCGGGATCGGGGAGAGCGGGTTCGGGCAGTACCACGGCAAGTACACGTTCGAGCTGTTCAGCCACAGGAAGGCGGTGGTCAGGAGGAGCCTCCTGGTCGAGTTCATGTTCAGATACCCGCCTTGGGACGAGTACAAGATGGGGATGTTGCGCCGCGTCTTCAGGTTCGACTACGTCTCGCTCGTGCTTGCGCTGCTCGCCTTTTGGCTGCTCGGCATAAGGCGATGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA005937