BGIOSGA005938

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Revision as of 02:30, 28 June 2012 by 127.0.0.1 (talk) (Created page with "{{IndicaGene| GeneName = BGIOSGA005938| Description = Putative uncharacterized protein| Definition = Oryza sativa Indica Group BGIOSGA005938, complete gene.| tag = P0030D0...")
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Gene Name

BGIOSGA005938

Description

Putative uncharacterized protein

Definition

Oryza sativa Indica Group BGIOSGA005938, complete gene.

LocusTag

P0030D07.2

Ensembl Transcript ID

BGIOSGA005938-TA

Ensembl Protein ID

BGIOSGA005938-PA

Length

5124

Source

Oryza sativa Indica Group

 ORGANISM  Oryza sativa Indica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 2

Location

Chromosome 2:27797796..27802919

Sequence Coding Region

27802763..27802919,27802110..27802199,27801922..27802022,27801724..27801837,27801556..27801637
,27801401..27801468,27801001..27801066,27800783..27800907,27799958..27800285
,27799636..27799737,27798844..27799548,27798236..27798531,27797796..27798126

Genome Context

<gbrowseImage1> name=IndicaChromosome02:27797796..27802919 source=RiceIndica02 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=IndicaChromosome02:27797796..27802919 source=RiceIndica02 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ATGGATAGGATACAGGTGTTGGTGAGGCTGAGGCCGCTGAGCGAGAAGGAGGTTGCTAGGGGGGAGCCAGCGGAGTGGGAGTGCATCAATGACAGCACTGTCATGTTCCGGAGCACCTTCCCTGACCGACCCACGGCGCCAACAGCATACACGTTCGATAGGGTATTTCACTCTGATTGCAGTACCAAAGAAGTCTACGAGGAAGGGGTGAAGGAAGTTGCCCTCTCTGTAGTTAGTGGCATTAACTCAAGTATTTTTGCATATGGACAAACCAGCAGTGGAAAGACATACACTATGACTGGAGTAACAGAATATACAGTAGCAGATATATATGATTATATTAACAAGCATGAAGAGAGAGCCTTTGTGTTGAAGTTCTCTGCGATTGAAATATATAATGAAGTTATACGGGATCTTCTTAGTGCGGAAAATACCCCTCTTAGACTCTGGGATGATGCAGAGAAGGGCACCTATGTAGAGAATCTTACAGAGGTTGTATTAAGGGATTGGAACCATCTCAAGGGACTTATTTCTGTGTGTGAAGCTCAAAGGAGGACAGGGGAGACCTTCTTAAACGAAAAAAGTTCTAGATCCCATCAGATACTTCGATTGACAGTTGAAAGCTCTGCTCGTGAGTTCTTAGGAAAGGACAAGTCAACTACACTCGTGGCTAGTGCAAACTTTGTTGATCTGGCTGGAAGTGAGCGTGCATCTCAGGCATTGTCAGCTGGCACAAGACTGAAAGAAGGTTGTCACATTAATAGGAGTTTGCTTGCCCTTGGCACTGTCATTAGAAAACTGAGCATGGGAAGTAATGCACACATACCGTATAGAGATTCAAAGCTTACACGCATACTACAGCCATCTTTGGGAGGTAATGCAAGAACTGCAATTATTTGTACACTGAGCCCTGCCACTAGCCACATTGAGCAATCAAGAAATACTCTGCTATTTGGGAGTTGTGCAAAGGAAGTAGTTACAAATGCTCAGGTTAATGTGGTCATGTCTGATAAAGCACTGGTTAAGCACTTGCAAAAGGAACTTGCTAGATTGGAGAGCGAGTTGCGGCATCCAGTTCAGAGTTCCAGTCTCGAAACATTATTGAAGGAAAAGGACAACCAAATCAGAAAGATGGAGAAAGAAATAAAAGAACTGAAGTCACAACGTGATTTGGCTCAATCCAGGTTGCAGGATTTGCTGCAATCTGTCGGTGATCATGACCTGAACCGTCAAGTTCAAGGAAAGCATTCAGTCAGAAGCCCTCCATCTGTTGGAATGCCCCCAAGCGTCAGCAGAGATGATAGTTCTCAGGTCTCTCATGATGATTCAGATCTTTACAAGGAAGTGCGATGTATTGAAAGCAATCGGACAGGAGGAAATGACCAGTTGGACTTATCAGCTGGTGAAAGTAGTAGCCCACAAGATTCAAATATGAATTCTGGTTTGCATGGAAATGATTCAAATGCATCAGTGAATTCTAGGCGTTCAAGGCCCTCTGGCGAAGCTCCTATTACTTTGGAGGAACACTTGGAGAATATTAGAAGGCCTTTTGTCAGTCTAGCCAAAGATCTAGGATCTTCAACACGTAACTCATCAAACTTAAGAGTAATTGGTAGAAGCAGGAGCTGTAGATCACTGACAGGTTCCACTATGTTTGACGATATGGAGATGGATGATTGCACTCCACTAAATAGAAGTTTGGTGGAGTTCCCAGGAAGACCTGTGGAATCTCATAGAAGAGGATCTGCACTGCACTATGATGCAGAGACCGACACACTTTCAAGGGCAGGATCCATGAGTTCTGAGATCAGCACTTTTAAGGATGCAAAGACAAATGGGTCTGTTGCATGCGATACAGAATTCACTGGTATTGGTGAATTTGTTGCTGAACTCAAAGAGATGGCCCAGGTTCATTATCAGAAGCAGTTAGGTGACCAGAATGCAAATGGAAAGAGCATCGGATTGGACCCGATCGAGGGTGTTTCTCAGTCACCTTCTCGATGGCCTTTGGAATTCGAGAAGAAGCAGCAAGAGATCATCGAGCTTTGGCAAGCTTGCAGCATTTCCTTGGTCCACAGGACTTACTTTTTCTTGCTATTCAAGGGAGAAGCAGCTGACTCGATCTACATGGAAGTGGAGCTTCGAAGGCTATCATTCCTGAGAGATACATACTCAAGGGGGAGCACCCCTAGCAATGCGATAGTAGGCAGCCTGAGTACTTCCCCTGTTGCGAGCGCAAAGAAGCTGCAGCGGGAGAGGGAGATGCTTGCCAGGCAGATGCAGAAGCGGCTGTCCACGGAGGAGAGGGAGCACACGTACACAAAATGGGGTGTCTCGCTGGACTCCAAGAGGAGGAAACTGCAGGTCGCTCGCCGCCTCTGGACCGAGACGAAAGACCTGGAGCATGTCAGGGAGAGCGCGTCCCTGGTCGCCAAGCTGATCGGGCTCCAGGAGCCAGGCCAAGTTCTCAAGGAGATGTTCGGGCTCAGCTTCGCGCCGCAGCAGCAGCCGACCCGGCGGCGATCCTCCAACGGCTGGAGATACGGGATCCCTTCGTTCGCCTGA</cdnaseq>

Protein Sequence

<aaseq>MDRIQVLVRLRPLSEKEVARGEPAEWECINDSTVMFRSTFPDRPTAPTAYTFDRVFHSDCSTKEVYEEGVKEVALSVVSGINSSIFAYGQTSSGKTYTMTGVTEYTVADIYDYINKHEERAFVLKFSAIEIYNEVIRDLLSAENTPLRLWDDAEKGTYVENLTEVVLRDWNHLKGLISVCEAQRRTGETFLNEKSSRSHQILRLTVESSAREFLGKDKSTTLVASANFVDLAGSERASQALSAGTRLKEGCHINRSLLALGTVIRKLSMGSNAHIPYRDSKLTRILQPSLGGNARTAIICTLSPATSHIEQSRNTLLFGSCAKEVVTNAQVNVVMSDKALVKHLQKELARLESELRHPVQSSSLETLLKEKDNQIRKMEKEIKELKSQRDLAQSRLQDLLQSVGDHDLNRQVQGKHSVRSPPSVGMPPSVSRDDSSQVSHDDSDLYKEVRCIESNRTGGNDQLDLSAGESSSPQDSNMNSGLHGNDSNASVNSRRSRPSGEAPITLEEHLENIRRPFVSLAKDLGSSTRNSSNLRVIGRSRSCRSLTGSTMFDDMEMDDCTPLNRSLVEFPGRPVESHRRGSALHYDAETDTLSRAGSMSSEISTFKDAKTNGSVACDTEFTGIGEFVAELKEMAQVHYQKQLGDQNANGKSIGLDPIEGVSQSPSRWPLEFEKKQQEIIELWQACSISLVHRTYFFLLFKGEAADSIYMEVELRRLSFLRDTYSRGSTPSNAIVGSLSTSPVASAKKLQREREMLARQMQKRLSTEEREHTYTKWGVSLDSKRRKLQVARRLWTETKDLEHVRESASLVAKLIGLQEPGQVLKEMFGLSFAPQQQPTRRRSSNGWRYGIPSFA</aaseq>

Gene Sequence

<dnaseqindica>1..157#721..810#898..998#1083..1196#1283..1364#1452..1519#1854..1919#2013..2137#2635..2962#3183..3284#3372..4076#4389..4684#4794..5124#ATGGATAGGATACAGGTGTTGGTGAGGCTGAGGCCGCTGAGCGAGAAGGAGGTTGCTAGGGGGGAGCCAGCGGAGTGGGAGTGCATCAATGACAGCACTGTCATGTTCCGGAGCACCTTCCCTGACCGACCCACGGCGCCAACAGCATACACGTTCGGTGAGTTTGCTGATACAATTGTTGCAGATGGTCATTGCTTAGATATTCTTGTGTTGGAGAATAGTAGATAACATTTGTAATCATGGTTCATGGAACCTTCAAACAAGATATTGGCTTTGACTCTTTCACAATTGTGTATATTCGTCATATTACAATTCATATCATTTGTCATTGACAGTTTGAAGCATTTTGATGTACAGAATTGCTATGTAAGGTTATTTTGATAGTACAGTAGATTGGTAATGCTGTTCTCTAAAACTAACTTGTCACTGTAACACAGTGTTTCGTGGATTAGTAATATTAGAAGAATTATGATTGATGCTGGTTAAGTAAATGCAGTCCAAGATTGCAGGGAATGGTTGTGGTTGGTTGCCCAGATGAGAGCCCACCTTGTTAAAGAAACTTTATTGAGATTGGCTTCATTTTAATAATTTATGCCAGAGGCACCATCCTAGATAATTGTGTTCTCTTTGGTGCATCATGTCACCTGGAATTTCCTGATTCAGTCCTCCAAGTTAAATTCTGGACCCTGCATGATTAACATAAGCATCCTTTCATTGCAGATAGGGTATTTCACTCTGATTGCAGTACCAAAGAAGTCTACGAGGAAGGGGTGAAGGAAGTTGCCCTCTCTGTAGTTAGTGGCATTAACTGTGAGTGCAAACCACACACGACACATACCACAATTTCAAAATATGTTAAGACATTTGAGCTAAATCAGAGTGCATTCCCTTTTACAGCAAGTATTTTTGCATATGGACAAACCAGCAGTGGAAAGACATACACTATGACTGGAGTAACAGAATATACAGTAGCAGATATATATGATTATATTAACAAGGTAACCAAACTTCCGTCCATCTTCTGATCCCATGTCAGAGTTTGGTCGTATTTTACAGTCTTCAAATGATCTTTTTTTTTTCAGCATGAAGAGAGAGCCTTTGTGTTGAAGTTCTCTGCGATTGAAATATATAATGAAGTTATACGGGATCTTCTTAGTGCGGAAAATACCCCTCTTAGACTCTGGGATGATGCAGAGGTGAAAAAAGGGCTCCTTATTATCCTTGATAATTATTATCCTGCAATGTATTTGCTTCTGACTTTATTATGCTATTTATTCAACAGAAGGGCACCTATGTAGAGAATCTTACAGAGGTTGTATTAAGGGATTGGAACCATCTCAAGGGACTTATTTCTGTGTGTGAAGGTGCAAAATTGATTACTTATAGCAGGCATACATTATTTGTAATTGGTGAAACCGTTTATCTCACATGTGCTTATGTACTTGCAATAGCTCAAAGGAGGACAGGGGAGACCTTCTTAAACGAAAAAAGTTCTAGATCCCATCAGATACTTCGATTGGTTTGTTCTTTACTCAAATCTATGAATTACTCCCTCTGTCCCAAAATAAGTGCAGCCATGGTTTTCTGCGCCCAACTTTGACCGTTCGTCTTATTTGAAAACTTTTTTTAAAAAATTAAAAACAGAAGTCACGAGTAAAGTACTATTTATGTTTTATCATCTCATAACAATAAAAATGCTAATTATAAAAAAATTTCAAATAAGACGGATGATCAAAATTGGGCGCAGAAACTCATGGCTGCGCTTATTTTGGGACGGAGGTAGTACTTTGGTATAAATTGTTATCTTTGAGTTTATGCTTCATTTTGGCTGATGTATTTGTCAATCAATTCAGACAGTTGAAAGCTCTGCTCGTGAGTTCTTAGGAAAGGACAAGTCAACTACACTCGTGGCTAGTGCAGTAAGAATAACATCTTACAAGTCTATCATGGAGTTCTTTTTATTGGAAAAATTAGGTGCATGCATTATTCATTCTCCATTTCTCCCCATGCAGAACTTTGTTGATCTGGCTGGAAGTGAGCGTGCATCTCAGGCATTGTCAGCTGGCACAAGACTGAAAGAAGGTTGTCACATTAATAGGAGTTTGCTTGCCCTTGGCACTGTCATTAGAAAACTGAGGTCCGAATCTCAACTTGAAACTGTGCAATTTTATTTAGTTCAATCCACATTATAGGAAAATTTGGTTGTCTTATTTAGAGAATAGTTTGTTGCTTGACAGAGTATGATTTTTTAAGGATGGCTGTAGTCATGTAGCTCCATATATGTTTTGATTTCACACTTGTCGCTTTAGAGAATTCTAGGAAAGATATATATTTGGAGCATGTATTATGTGCACAGAATTTGTGCAAAAATATTGTTAGATATGTAAAACATAAAAAGGCAATAGGGTTGCTATTGTTTGATAACAGATAATATATTTTTTGTATCATTTTATTTTGTGTAGTACATGTCATGTTTTGCACAATTTTTTGTGTGCTGACATATTTAAGCATGCTTTATGCATATGTATTTTCTTTTGGGATTTTATATAGTGTACAATAAAGTGGGATGTTTACAGTAATGTTTGCTTGGAATTTCGCCCAAGTGATATCAGTTATATCTTTTCATTAATGCAGCATGGGAAGTAATGCACACATACCGTATAGAGATTCAAAGCTTACACGCATACTACAGCCATCTTTGGGAGGTAATGCAAGAACTGCAATTATTTGTACACTGAGCCCTGCCACTAGCCACATTGAGCAATCAAGAAATACTCTGCTATTTGGGAGTTGTGCAAAGGAAGTAGTTACAAATGCTCAGGTTAATGTGGTCATGTCTGATAAAGCACTGGTTAAGCACTTGCAAAAGGAACTTGCTAGATTGGAGAGCGAGTTGCGGCATCCAGTTCAGAGTTCCAGTCTCGAAACATTATTGAAGGAAAAGGACAACCAAATCAGAAAGGTAAAGTTACTTGTCACTTTTCGTACCTCCCTGTTTTCTCCTCCACGGCTCATACTGGAATTTGCAGAAAACTATTGTTTTTGTGTGCATCTGGTCTATCTTACTTGCTGCCACTTTTGCCTTGTCCATTACGAGTATTTCCACACTATTCTACTTGACAAAAAAAGTTTGTTGTTTCTGTTGCACACATCCATAAAATTTCATGTCATGTCCATTGCAGATGGAGAAAGAAATAAAAGAACTGAAGTCACAACGTGATTTGGCTCAATCCAGGTTGCAGGATTTGCTGCAATCTGTCGGTGATCATGACCTGAACCGTCAAGTATATTCTCTGCCATGACTTCCGAAATTTAGTTTTGTTTCATCTCGTTGTTCCGGCAGGGTCATGTTTGTTTTGTTTATATTTTAGGTTCAAGGAAAGCATTCAGTCAGAAGCCCTCCATCTGTTGGAATGCCCCCAAGCGTCAGCAGAGATGATAGTTCTCAGGTCTCTCATGATGATTCAGATCTTTACAAGGAAGTGCGATGTATTGAAAGCAATCGGACAGGAGGAAATGACCAGTTGGACTTATCAGCTGGTGAAAGTAGTAGCCCACAAGATTCAAATATGAATTCTGGTTTGCATGGAAATGATTCAAATGCATCAGTGAATTCTAGGCGTTCAAGGCCCTCTGGCGAAGCTCCTATTACTTTGGAGGAACACTTGGAGAATATTAGAAGGCCTTTTGTCAGTCTAGCCAAAGATCTAGGATCTTCAACACGTAACTCATCAAACTTAAGAGTAATTGGTAGAAGCAGGAGCTGTAGATCACTGACAGGTTCCACTATGTTTGACGATATGGAGATGGATGATTGCACTCCACTAAATAGAAGTTTGGTGGAGTTCCCAGGAAGACCTGTGGAATCTCATAGAAGAGGATCTGCACTGCACTATGATGCAGAGACCGACACACTTTCAAGGGCAGGATCCATGAGTTCTGAGATCAGCACTTTTAAGGATGCAAAGACAAATGGGTCTGTTGCATGCGATACAGAATTCACTGGTATTGGTGAATTTGTTGCTGAACTCAAAGAGATGGCCCAGGTTCATTATCAGAAGCAGTTAGGTGACCAGGTATGAAAATATCTAATTAGCTTTGAGGGCACTTAGCTCTGCAGTTCATTTAATTATTGTTTTATTCAAGAAAAATGTGATTATGTGATGCTGGTTAGGAAAATACATGCTTATATATAGTATTGCTTCGGTTTAACATCCTGGCTCTTGGGACTCTATCATAGAATTTCAACAATTTCTCCCACCCCTCAAAAGCCACATACCATTAGCGTTCCAACTAATAATCTAAAATAAATAGTGTTTTCTGCTGAATACTTCTTTTTCTATGCTTCAGCAAGTAATTAAATTATTGGCATTTCATCCATGTTTTAGAATGCAAATGGAAAGAGCATCGGATTGGACCCGATCGAGGGTGTTTCTCAGTCACCTTCTCGATGGCCTTTGGAATTCGAGAAGAAGCAGCAAGAGATCATCGAGCTTTGGCAAGCTTGCAGCATTTCCTTGGTCCACAGGACTTACTTTTTCTTGCTATTCAAGGGAGAAGCAGCTGACTCGATCTACATGGAAGTGGAGCTTCGAAGGCTATCATTCCTGAGAGATACATACTCAAGGGGGAGCACCCCTAGCAATGCGATAGTAGGCAGCCTGAGTACTTCCCCTGTTGCGAGGTGCGTAAATACTCGTTTCCATTCATTCACTTCTTTTGTGCCATAACCTTAAAATTAGCGCCCAACCATCACGAGCAACTCATAAGCCCCGTGCTCTGCTGTAATGCAGCGCAAAGAAGCTGCAGCGGGAGAGGGAGATGCTTGCCAGGCAGATGCAGAAGCGGCTGTCCACGGAGGAGAGGGAGCACACGTACACAAAATGGGGTGTCTCGCTGGACTCCAAGAGGAGGAAACTGCAGGTCGCTCGCCGCCTCTGGACCGAGACGAAAGACCTGGAGCATGTCAGGGAGAGCGCGTCCCTGGTCGCCAAGCTGATCGGGCTCCAGGAGCCAGGCCAAGTTCTCAAGGAGATGTTCGGGCTCAGCTTCGCGCCGCAGCAGCAGCCGACCCGGCGGCGATCCTCCAACGGCTGGAGATACGGGATCCCTTCGTTCGCCTGA</dnaseqindica>

External Link(s)

EnsemblPlants:BGIOSGA005938