Os12g0538900

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Revision as of 10:32, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os12g0538900| Description = Armadillo-like helical domain containing protein| Version = NM_001073477.1 GI:115488915 GeneID:4352428| Length = 701...")
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Gene Name

Os12g0538900

Description

Armadillo-like helical domain containing protein

Version

NM_001073477.1 GI:115488915 GeneID:4352428

Length

7015 bp

Definition

Oryza sativa Japonica Group Os12g0538900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 12

Location

Chromosome 12:21749720..21756734

Sequence Coding Region

21749958..21750020,21750337..21750389,21750528..21750655,21750751..21750950,21751042..21751115
,21751202..21751271,21751850..21751903,21752013..21752108,21752247..21752297
,21752373..21752462,21752586..21752702,21752792..21752863,21752968..21753153
,21753515..21753615,21753734..21753782,21754116..21754181,21754594..21755352
,21756004..21756564

Expression

GEO Profiles:Os12g0538900

Genome Context

<gbrowseImage1> name=NC_008405:21749720..21756734 source=RiceChromosome12 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008405:21749720..21756734 source=RiceChromosome12 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggactcccgctccatcaacctccggggtttcgccgggaacgccggcaaaaacatcatgcaggggattgggggatttgttttcggaaatgagaggtccgagtccaaggaagacagctatgttgagagattccttgatcgcataagcaatggcaccatatctgacgataggaggtctgccatgaccgagctgcagtcgcttgtggcagagtctcgttctgctcagatgtcatttggagccatgggatttcctgttctcctcaacgttttaaaagaagaccgtgaagatgttgagcttgtgagaggtgctctagaaacctttgtgagtgcactgactcctattgaaacctcgcaaggaccaaaaactgaggttcagcctgcatcagtgaactctgatttgctttctcgagaaactgagaatatctctcttcttttgagcttattgtcagaggaggatttctatgtgcggtactatacgatccagcttttgacagcgctacttacgaactcgctgaaaagactacaagaggcaattctattgattccccggggcataacagttttaatggatatgcttatggatcgggaggtcataaggaatgaagcactgttacttcttacttatctgaccagggatgctgaggaaattcaaaaaattgtggtatttgagggtgtatttgagaaaatatttagcattatcagagaggaaggatactctgatggtggtgttgttgttcaggattgccttgaactgctaaataatttaatccgacaaaatgcatccaatcagatgcttctgaaagagacaatcggctttgatccattgatagcaatactaaagataaggagaggcagtgcattcaatttcactcaacaaaagacagtaaatcttctcggtgctttagatactgttgagttgcttttgatgggaggaggctcatctggtgagccaggtaaagatgctaacaagaccaccaaccaaactgctttagctcagaaaaatattctggatcaccttctactgttaggcgtggagagtcagtgggcccctgtagctctccgctgtatggccttgcgatgcattggtaatttggtgttaagaaatcctcagaatcttgattctcttgcgagcaagcaagttggggaagatcctcatgttcagcctgcactcagtgcaatcttttctataatcttgcgaacctccttagcacaagaatttgttgctgctgattatgtcttcaagtgtttctgtgagaaaaatcctggtggccaggctttactagcatcaacgattgctccacatccaaatcaagcacatgctacatttggggccactactgacatgccttttggaagtatacttctgcaagctctggtgtcaagtgatgataatggagatatggaggcatgttgcagagcatctagtgttctttctcacataatcaaggacaacttgcaatgcaaagatcgtgtactgcaaattcagcttgaaacacctgcaccttccttgggacgcactgagccactactgcaccgcattgttacatgtttgtctattgcagcttcagcagaaggagaaaatggccaaagcggtcaaccagaagaatcatatattcagccagtcattctccggttactcattgtatggcttgtggattgtgctaatgccgtagattgccttttggaatcagcagtacatctgaactacattatcgagcttgcttcaagtaaacgctacagtgcttgtgttcgtggattggctgccgttgttttaggtgcttgtgtcctgtataatgcaagccgggagaagggccgagatgcctttgctgttgctgatgctataagtcagaagattggcctatccacatacttcttgaggttcgatgagttgcggaaaaggtttgcacattcatcatcagggcagcagaaccgcaagcagctttcacggtcaagtgcaaatagtatgtcagatttccaagagattgaagaggaagaaataaataaaggcgatcagcatccagtcctgtcagaaatctttgattcacattttgttagtttcctcagtaagcttgagactgatattagggacaatataatggatatatttagtcgaacaaagaccgcaactgcaattatacctgctgagttggagcagaagaatggggaagttgatggagaatacatcaagcggctaaagtcatttgtagagaaacaatgcaatgaaatgcaggacttgctaggtcggaatgcaatgctggcagaagagttagtgagaactggtggtggcaactccgctgattccttacagaaaccaagcagtggccgagaaagggtccaaatcgaatccctcagacaagaactcgaaggagcaacccgacgcatagaggcactcagagctgaacatacccagatcgaagccgaagctagcaaccaacgaaacctcgcagcgaaactggaatctgatctcaagagcctgtcagatgcttacaacagccttgaacaggccaacttccgtcttgactctgaagtgaaggccttgcggcagggaggcagtgcaccctaccccgatgtggaagcaatcaaagcggaagcgaaggaggaggcagagaaggagagcgaggcggagctaaacgatctcctcgtctgcctgggccaggagcagagcaaggtggagaagctgagcacgagactggcagagcttggtgaagatgtggacaccttgctgcaaggcattggcgatgacactgctttgccagatgatgacgacgatgaagatgaagatgatgagtaa</cdnaseq>

Protein Sequence

<aaseq>MDSRSINLRGFAGNAGKNIMQGIGGFVFGNERSESKEDSYVERF LDRISNGTISDDRRSAMTELQSLVAESRSAQMSFGAMGFPVLLNVLKEDREDVELVRG ALETFVSALTPIETSQGPKTEVQPASVNSDLLSRETENISLLLSLLSEEDFYVRYYTI QLLTALLTNSLKRLQEAILLIPRGITVLMDMLMDREVIRNEALLLLTYLTRDAEEIQK IVVFEGVFEKIFSIIREEGYSDGGVVVQDCLELLNNLIRQNASNQMLLKETIGFDPLI AILKIRRGSAFNFTQQKTVNLLGALDTVELLLMGGGSSGEPGKDANKTTNQTALAQKN ILDHLLLLGVESQWAPVALRCMALRCIGNLVLRNPQNLDSLASKQVGEDPHVQPALSA IFSIILRTSLAQEFVAADYVFKCFCEKNPGGQALLASTIAPHPNQAHATFGATTDMPF GSILLQALVSSDDNGDMEACCRASSVLSHIIKDNLQCKDRVLQIQLETPAPSLGRTEP LLHRIVTCLSIAASAEGENGQSGQPEESYIQPVILRLLIVWLVDCANAVDCLLESAVH LNYIIELASSKRYSACVRGLAAVVLGACVLYNASREKGRDAFAVADAISQKIGLSTYF LRFDELRKRFAHSSSGQQNRKQLSRSSANSMSDFQEIEEEEINKGDQHPVLSEIFDSH FVSFLSKLETDIRDNIMDIFSRTKTATAIIPAELEQKNGEVDGEYIKRLKSFVEKQCN EMQDLLGRNAMLAEELVRTGGGNSADSLQKPSSGRERVQIESLRQELEGATRRIEALR AEHTQIEAEASNQRNLAAKLESDLKSLSDAYNSLEQANFRLDSEVKALRQGGSAPYPD VEAIKAEAKEEAEKESEAELNDLLVCLGQEQSKVEKLSTRLAELGEDVDTLLQGIGDD TALPDDDDDEDEDDE</aaseq>

Gene Sequence

<dnaseqindica>239..301#618..670#809..936#1032..1231#1323..1396#1483..1552#2131..2184#2294..2389#2528..2578#2654..2743#2867..2983#3073..3144#3249..3434#3796..3896#4015..4063#4397..4462#4875..5633#6285..6845#tccctcccccatcttcgccttgcttccgaatccaaccccaactcccgatcccctcctcctccgccaccgccgccttcgccgctgcggcgatctcactcgcacttctctctatcccccaggtaagcgtcgcccccaaccccacgccgccgccgcgtgttcgtccatcccgtgggctgcgggtgatccgactaaagcgtgtgttcctcgctgcttgcaattcgcaggtggccgcgatccgatggactcccgctccatcaacctccggggtttcgccgggaacgccggcaaaaacatcatgcaggtgagcggttttccccgcctcccctctcctctcccgacctgatgaatcgtgcgcgttgtgggatccgccctaggttgggagggagactgacgacgatgcgagcgctgcgtcggtagcaggggcgggttctagacacctagggcgttacagttttttttttctctctaagctctcaaatgctgtatcagatagtcagagcttgttgtgtgtagtagttgctccgtgtgatgtataatgcttgcgatgatgtgggaggcgatcggcgtggtttgataattctcgaccttatgctgtgttggtgtgtacaatttcgcaggggattgggggatttgttttcggaaatgagaggtccgagtccaaggaagacaggttggttggcattttggtataagctgttactagttcccttgtacactcacatgcttatctttagcttgaagagaaaaggaaattgttggtgtatgccacatttggaaagtgctcttctgactgtgttctgtgctgcagctatgttgagagattccttgatcgcataagcaatggcaccatatctgacgataggaggtctgccatgaccgagctgcagtcgcttgtggcagagtctcgttctgctcagatgtcatttggagccatgggtatttcacttactcgaagcccagccattcattcaccagctattggttatgtgtggttgacacttaatacgtttatttgttaacatggaaaataggatttcctgttctcctcaacgttttaaaagaagaccgtgaagatgttgagcttgtgagaggtgctctagaaacctttgtgagtgcactgactcctattgaaacctcgcaaggaccaaaaactgaggttcagcctgcatcagtgaactctgatttgctttctcgagaaactgagaatatctctcttcttttgagcttattggtgagcgaacatttgagtttctatggcaagtaatggacttcacctcctttgtttaatcatgacatattttcccctcatgcttgttttgaagtcagaggaggatttctatgtgcggtactatacgatccagcttttgacagcgctacttacgaactcgctgaaaaggtgccccgtaagtcattttctgttgagatgtcatcgatatgctagagccctctataactcctttttattttctttccgtatgacagactacaagaggcaattctattgattccccggggcataacagttttaatggatatgcttatggatcgggaggtttgaaccctaacttcccctgccttctgcatccttaactctgaggaagcacacatgccattcatgccatttctcttattttaccatcaaaatttgcctgtccttgtgtcatagcattctaatgtttgctgaaagtgcatgcaattattttgtatgcactctttgtacacataaaacacagttgtagtttagctagcttgacttccaacatgagtactgtacattcaagtggaactgggcttgtgtctattcttctgaacaaactgttatatgcgtactcaagtgcacagtacgcactactactggaaaacactatcaattcactagcaccttgttctactgtagattccagagtggaacttggccttttgaaaggcagttctttttgcaaatgataagatatttacttatgctgcggtaattggtagtcattaactccattgtgattccatatttcttaatcaatttattaccatctctctcttcctctctctattcgtgtacctgttgtttaacctgtttactttggattctgtttatatagctcacattgttgatatctttgttgtatcttgaaggtcataaggaatgaagcactgttacttcttacttatctgaccagggatgctgaggttgagcttttttcgtattcttagttgatgtattgtttaatagataaatcttgattaaactgtacttctataattataaaacgacaattaattcatctttttttttcaggaaattcaaaaaattgtggtatttgagggtgtatttgagaaaatatttagcattatcagagaggaaggatactctgatggtggtgttgttgttcaggtgatcatctaataaccactagatgatttaatgttgttaattatctgacattagtttaaaaccttttttagtcagtttttattatgtttttgtacttgcataggcaagtttgctaatatgttcctttccttggagcaggattgccttgaactgctaaataatttaatccgacaaaatgcatccaatcaggtttatatttggctcaaaatcttttgaacttttaagttgcctaatttaattgacactacttaatgctgatatcagatgcttctgaaagagacaatcggctttgatccattgatagcaatactaaagataaggagaggcagtgcattcaatttcactcaacaaaaggtatgctgttcattgctcagctatttggcctcacattccatcctcagaagaatgcctagtttggtttgtcttagaataatacattagcaacattttgctcaagttagaactctgtttctttagacagtaaatcttctcggtgctttagatactgttgagttgcttttgatgggaggaggctcatctggtgagccaggtaaagatgctaacaagaccaccaaccaaactgctttagctcaggtgtccttttctccgtcaaactcttcttttgcaatgtgttatgacacataattaagcttctatattatgtattcaatcaaacatggcagaaaaatattctggatcaccttctactgttaggcgtggagagtcagtgggcccctgtagctctccgctgtatggtgagttacatataaaccattaatagttttattcagttctattacttaatctgtactattgagcatttttgtgcttttttcacaactgaccattatttttctaggccttgcgatgcattggtaatttggtgttaagaaatcctcagaatcttgattctcttgcgagcaagcaagttggggaagatcctcatgttcagcctgcactcagtgcaatcttttctataatcttgcgaacctccttagcacaagaatttgttgctgctgattatgtcttcaagtgtttctgtgaggtgtttttccattctcgtattttcttttgcttcaacaataatatactacttcaaaagtgtttctggatcaacctaagaagattgttaaacataaatgcactttgggttgcaaaatggaaatgggaatgaaaggcttttaaaaaggtacactgtattaaaaggaaacatgtaatggactaagaagcattatttctctctcaggaattcttgatcagatgcccaatattccatgattttttttttctaaattttgaattgaaattgttggcagtgtctgctatacttcttggtcttccttgtttgtgtacattagattattggtacaaaataataatctgtacaattgctgtttgtggaacagaaaaatcctggtggccaggctttactagcatcaacgattgctccacatccaaatcaagcacatgctacatttggggccactactgacatgccttttggaaggttagtatacaagtttgtatttctgttgcatcttattactacaggggttagtatacaagtcccatttttgtcatgcatggaattttatctttgacttacgtttctactgtaataacagtatacttctgcaagctctggtgtcaagtgatgataatggagatatggaggtaatgtctttgtaaacctaagacaccaccaatactcaaagaaactgctcgaccatttaatgcttcaagcgtattgttggttgactactttgatgatgaaagtatacatgttgagaattcataaatatctatagcgtctattatgaaacaacctaggattgtaacattgctccagttgtttttctactctatatgatgtggctgttctcatttagcattttttgtaggaaggaattttgtctagataataaaggatattatagtttgagttgtcttgtgatacctgcagttttgcccttatgctgagtatgacttttgctcctaaaatttcaggcatgttgcagagcatctagtgttctttctcacataatcaaggacaacttgcaatgcaaagatcgtgtatgttcccttacacctttttatctcagtgaattattattgtatagactatagaattgtctagtgaagcaactatccaactgctgataattgattatttaacttcactactgttgcctaaacgtgaccacattgagacaagttctacatttagcattgtgcataggctcaattatatgatcccatttcattgttaggttatgcctactggctgactttgttatcattgtaaatgcactcttgtatattctgcactctgtgtacttctgttctgcacctcgtgatgtcagaaaatcttatatgccttattttctttcaattatacatctactatttaacgaaggcaggatttgttgtgtgtacaatctcttgtataccctaacgcattgctttctaaaaccatttttttcaggtactgcaaattcagcttgaaacacctgcaccttccttgggacgcactgagccactactgcaccgcattgttacatgtttgtctattgcagcttcagcagaaggagaaaatggccaaagcggtcaaccagaagaatcatatattcagccagtcattctccggttactcattgtatggcttgtggattgtgctaatgccgtagattgccttttggaatcagcagtacatctgaactacattatcgagcttgcttcaagtaaacgctacagtgcttgtgttcgtggattggctgccgttgttttaggtgcttgtgtcctgtataatgcaagccgggagaagggccgagatgcctttgctgttgctgatgctataagtcagaagattggcctatccacatacttcttgaggttcgatgagttgcggaaaaggtttgcacattcatcatcagggcagcagaaccgcaagcagctttcacggtcaagtgcaaatagtatgtcagatttccaagagattgaagaggaagaaataaataaaggcgatcagcatccagtcctgtcagaaatctttgattcacattttgttagtttcctcagtaagcttgagactgatattagggacaatataatggatatatttagtcgaacaaagaccgcaactgcaattatacctgctgagttggagcagaagaatggggaagttgatggagaatacatcaagcggctaaagtcatttgtagagaaacaatgcaatgaaatgcaggttagtttcctgtcaattattaaagatcacctacttttgagtgcattctgagaagattaaataaacagttttgggtaattctagacaatagtttacatgagcttcaaatcctttcatatctgaaggaaagatttggtcacttccacattttggtaaagcttagctttatactttaaagtctgtaaggactttgcctgtaggataaggagacaaatgactacttgcttaccattcgttaagatgctttcctgcaaaactcactggactagggaaattcttattttcttttctttccttttctttttttgtttttgaagagaatattcagaaacttcactttagcaagaatatactggcatcgctatactagctagttgtaaatgcccataaaccttacgcttgaccaatgaacagttcctagaacgtcagtcagatattggttggctgtggctgttagtacttcctctgtttcatattataagactttctagcattgtccacattcatatatatgttaatgaatctagacaacatatatatgaatgtgggtaatgctagaaagtcttataataagaaacggaggaagtagtttttacaacaatgcattcgacattgtagaagctaacaatggcattacttacttttcttcaggacttgctaggtcggaatgcaatgctggcagaagagttagtgagaactggtggtggcaactccgctgattccttacagaaaccaagcagtggccgagaaagggtccaaatcgaatccctcagacaagaactcgaaggagcaacccgacgcatagaggcactcagagctgaacatacccagatcgaagccgaagctagcaaccaacgaaacctcgcagcgaaactggaatctgatctcaagagcctgtcagatgcttacaacagccttgaacaggccaacttccgtcttgactctgaagtgaaggccttgcggcagggaggcagtgcaccctaccccgatgtggaagcaatcaaagcggaagcgaaggaggaggcagagaaggagagcgaggcggagctaaacgatctcctcgtctgcctgggccaggagcagagcaaggtggagaagctgagcacgagactggcagagcttggtgaagatgtggacaccttgctgcaaggcattggcgatgacactgctttgccagatgatgacgacgatgaagatgaagatgatgagtaatataatgtgtgtaattctgtcatctcatggtgtaaccagttggggatcatgctgttgtagcaacaactgtacagtggatgatgatatttagacaaaggtttcaagttatttatgttggatgattgaattgctgaatttagttctcagaattaagtgaagtccttaggaac</dnaseqindica>

External Link(s)

NCBI Gene:Os12g0538900, RefSeq:Os12g0538900